Wall clock time and date at job start Mon Mar 30 2020 17:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48503 * 109.47301 * 270.00016 * 3 2 1 5 5 H 1.48497 * 109.47262 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.47320 * 150.00075 * 3 2 1 7 7 C 1.37873 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00253 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00218 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47164 * 300.00602 * 9 7 2 11 11 O 1.42900 * 109.47003 * 60.00163 * 9 7 2 12 12 C 1.52997 * 109.47395 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47261 * 180.02562 * 12 9 7 14 14 C 1.48529 * 111.00073 * 52.60606 * 13 12 9 15 15 C 1.54943 * 103.23110 * 159.72217 * 14 13 12 16 16 C 1.54593 * 102.91873 * 322.58517 * 15 14 13 17 17 H 1.09001 * 110.39100 * 262.99893 * 16 15 14 18 18 C 1.53004 * 110.31247 * 140.87180 * 16 15 14 19 19 O 1.42903 * 109.46640 * 69.27935 * 18 16 15 20 20 C 1.47906 * 111.00163 * 169.99916 * 13 12 9 21 21 H 0.96998 * 120.00516 * 0.02562 * 1 2 3 22 22 H 0.96703 * 114.00083 * 60.00097 * 11 9 7 23 23 H 1.09002 * 109.47127 * 60.00008 * 12 9 7 24 24 H 1.09006 * 109.46990 * 300.00294 * 12 9 7 25 25 H 1.08995 * 110.67216 * 41.28703 * 14 13 12 26 26 H 1.09004 * 110.80922 * 278.21881 * 14 13 12 27 27 H 1.08999 * 110.72722 * 204.22642 * 15 14 13 28 28 H 1.09004 * 110.87493 * 81.01227 * 15 14 13 29 29 H 1.08994 * 109.47158 * 189.27923 * 18 16 15 30 30 H 1.09000 * 109.46488 * 309.28353 * 18 16 15 31 31 H 0.96699 * 113.99432 * 179.97438 * 19 18 16 32 32 H 1.08998 * 109.91583 * 94.80499 * 20 13 12 33 33 H 1.09004 * 109.91554 * 333.51082 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6620 -0.0005 13 7 1.5108 -4.9342 -0.0012 14 6 0.5158 -4.9738 -1.1032 15 6 0.2441 -6.4888 -1.2813 16 6 1.6372 -7.1190 -1.0529 17 1 2.1304 -7.3062 -2.0068 18 6 1.5078 -8.4202 -0.2586 19 8 0.8790 -9.4136 -1.0710 20 6 2.4235 -6.0731 -0.2410 21 1 -0.4851 0.8400 -0.0004 22 1 0.9209 -2.5291 -1.9984 23 1 2.8719 -3.6043 0.8895 24 1 2.8720 -3.6042 -0.8905 25 1 0.9344 -4.5483 -2.0151 26 1 -0.3972 -4.4501 -0.8196 27 1 -0.1146 -6.7006 -2.2886 28 1 -0.4676 -6.8460 -0.5369 29 1 2.4984 -8.7659 0.0364 30 1 0.9043 -8.2437 0.6318 31 1 0.7644 -10.2669 -0.6307 32 1 2.7396 -6.5022 0.7098 33 1 3.2926 -5.7394 -0.8080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379386713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:28 Heat of formation + Delta-G solvation = -124.864289 kcal Electronic energy + Delta-G solvation = -14965.618533 eV Core-core repulsion = 12411.027850 eV Total energy + Delta-G solvation = -2554.590683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36268 -38.06053 -36.85103 -34.28848 -33.26745 -30.49118 -29.64969 -26.79145 -25.11133 -23.01296 -21.71883 -21.01361 -19.05928 -18.25870 -16.86332 -16.73657 -16.63674 -16.07472 -15.70904 -15.40232 -14.91815 -14.49696 -13.98959 -13.42510 -13.31439 -13.21112 -12.84062 -12.76897 -12.67719 -12.27385 -12.05416 -12.00390 -11.62136 -11.41665 -11.01130 -10.80463 -10.72372 -9.93748 -9.25281 -8.13803 -6.40048 1.40531 1.41256 1.52236 2.38425 3.12040 3.20769 3.29242 3.77188 3.81967 4.18930 4.22418 4.41780 4.44943 4.46935 4.55946 4.65452 4.68530 4.75461 4.94530 5.02135 5.07616 5.17119 5.34281 5.37226 5.62421 5.72024 5.98466 6.14923 6.25701 6.72443 6.95783 7.31722 7.50963 8.90682 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.082801 B = 0.006194 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.080903 B = 4519.664718 C = 4725.023036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.588 4.588 8 H 0.059 0.941 9 C 0.234 3.766 10 H 0.020 0.980 11 O -0.568 6.568 12 C 0.040 3.960 13 N -0.531 5.531 14 C 0.057 3.943 15 C -0.112 4.112 16 C -0.095 4.095 17 H 0.080 0.920 18 C 0.092 3.908 19 O -0.591 6.591 20 C 0.041 3.959 21 H 0.261 0.739 22 H 0.349 0.651 23 H 0.069 0.931 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.397 0.603 32 H 0.087 0.913 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -14.544 -1.504 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.626 4.626 8 H 0.077 0.923 9 C 0.176 3.824 10 H 0.038 0.962 11 O -0.372 6.372 12 C -0.089 4.089 13 N -0.255 5.255 14 C -0.070 4.070 15 C -0.150 4.150 16 C -0.114 4.114 17 H 0.098 0.902 18 C 0.014 3.986 19 O -0.400 6.400 20 C -0.087 4.087 21 H 0.070 0.930 22 H 0.194 0.806 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.246 0.754 32 H 0.105 0.895 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.714 -14.044 -0.944 14.557 hybrid contribution 1.091 0.898 -0.594 1.533 sum 4.805 -13.145 -1.538 14.080 Atomic orbital electron populations 1.70216 1.07695 1.27390 1.48329 1.25894 0.95471 1.02925 0.93303 0.85533 0.78708 0.78736 0.78425 1.19806 1.20904 1.18891 1.22008 0.93516 0.92677 1.54391 0.92260 1.19145 0.87936 0.90373 0.84957 0.96187 1.86627 1.38997 1.95888 1.15664 1.22814 0.96216 0.90007 0.99820 1.64763 1.14027 1.02550 1.44189 1.23148 0.96369 0.95365 0.92146 1.22566 0.96678 0.94002 1.01759 1.21950 0.96267 0.93971 0.99250 0.90199 1.22179 0.96954 0.87236 0.92241 1.86429 1.83123 1.25604 1.44795 1.22909 0.94502 0.91250 1.00022 0.92975 0.80563 0.91251 0.95327 0.94482 0.91477 0.90857 0.91484 0.91862 0.93188 0.75352 0.89454 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.26 12.84 21.44 0.28 -53.99 16 2 C 0.03 1.50 5.40 84.65 0.46 1.95 16 3 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.59 -32.54 8.76 25.60 0.22 -32.32 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 9 C 0.23 12.15 2.91 29.85 0.09 12.24 16 10 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 11 O -0.57 -29.11 8.99 -148.98 -1.34 -30.45 16 12 C 0.04 1.68 4.82 86.30 0.42 2.09 16 13 N -0.53 -19.79 5.40 -883.00 -4.76 -24.55 16 14 C 0.06 2.10 4.65 86.65 0.40 2.51 16 15 C -0.11 -3.31 6.51 31.80 0.21 -3.10 16 16 C -0.10 -2.44 3.26 -9.91 -0.03 -2.47 16 17 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 18 C 0.09 1.87 6.13 71.98 0.44 2.31 16 19 O -0.59 -11.85 13.55 -148.98 -2.02 -13.87 16 20 C 0.04 1.17 6.36 86.45 0.55 1.72 16 21 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 22 H 0.35 16.15 8.33 -74.05 -0.62 15.53 16 23 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 24 H 0.03 1.16 7.81 -2.38 -0.02 1.14 16 25 H 0.04 1.37 6.81 -2.39 -0.02 1.36 16 26 H 0.07 2.91 6.83 -2.39 -0.02 2.89 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.07 1.99 7.76 -2.39 -0.02 1.98 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.03 7.99 -2.39 -0.02 1.01 16 31 H 0.40 3.98 9.12 -74.06 -0.68 3.31 16 32 H 0.09 2.22 7.68 -2.39 -0.02 2.21 16 33 H 0.05 1.29 7.57 -2.38 -0.02 1.27 16 Total: -1.00 -66.09 267.10 -3.26 -69.35 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.19 Total: 23.08 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 2.75 Total: -15.06 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -4.49 Total: -78.54 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -3.36 Total: -44.32 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.09 -3.26 -69.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379386713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.517 kcal (2) G-P(sol) polarization free energy of solvation -66.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds