Wall clock time and date at job start Mon Mar 30 2020 17:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 119.99594 * 2 1 4 4 O 1.21283 * 120.00089 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00335 * 0.02562 * 3 2 1 6 6 S 1.81004 * 109.47123 * 179.97438 * 5 3 2 7 7 C 1.76199 * 99.99720 * 179.97438 * 6 5 3 8 8 H 1.07997 * 120.00414 * 0.02562 * 7 6 5 9 9 C 1.38801 * 119.99695 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00337 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00004 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46894 * 60.00235 * 11 9 7 13 13 H 1.48499 * 109.47044 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47097 * 300.00286 * 11 9 7 15 15 C 1.46501 * 120.00098 * 179.97438 * 2 1 3 16 16 C 1.53000 * 117.49879 * 8.62378 * 15 2 1 17 17 C 1.52998 * 117.50040 * 300.00145 * 15 2 1 18 18 H 1.09001 * 109.47060 * 90.00388 * 1 2 3 19 19 H 1.09004 * 109.47073 * 209.99877 * 1 2 3 20 20 H 1.09000 * 109.47212 * 329.99960 * 1 2 3 21 21 H 1.09000 * 109.47188 * 299.99755 * 5 3 2 22 22 H 1.08996 * 109.47042 * 59.99980 * 5 3 2 23 23 H 0.97002 * 120.00170 * 179.97438 * 10 9 7 24 24 H 1.08997 * 115.54812 * 154.32989 * 15 2 1 25 25 H 1.09003 * 117.49640 * 0.02562 * 16 15 2 26 26 H 1.08994 * 117.49767 * 145.01717 * 16 15 2 27 27 H 1.08994 * 117.50389 * 214.97973 * 17 15 2 28 28 H 1.09008 * 117.49776 * 359.97438 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4413 5.2082 0.0010 8 1 0.3761 5.0305 0.0011 9 6 1.9281 6.5081 0.0019 10 7 3.2264 6.7247 0.0024 11 14 0.7406 7.9501 0.0010 12 1 -0.1158 7.8868 1.2127 13 1 1.5067 9.2222 0.0029 14 1 -0.1132 7.8875 -1.2124 15 6 2.1976 -1.2687 0.0006 16 6 1.3888 -2.5515 -0.2024 17 6 1.9632 -2.2193 1.1763 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5138 21 1 0.7583 2.5303 -0.8892 22 1 0.7590 2.5298 0.8908 23 1 3.5666 7.6332 0.0027 24 1 3.2002 -1.2328 -0.4254 25 1 0.3117 -2.4514 -0.3367 26 1 1.8593 -3.3598 -0.7621 27 1 2.8114 -2.8091 1.5235 28 1 1.2642 -1.9005 1.9496 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388456956.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:42 Heat of formation + Delta-G solvation = -29.662827 kcal Electronic energy + Delta-G solvation = -12062.123310 eV Core-core repulsion = 9818.580649 eV Total energy + Delta-G solvation = -2243.542661 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 215.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97289 -38.25156 -34.91276 -34.58927 -30.63283 -27.97074 -27.68104 -23.44328 -23.12679 -20.42966 -19.58745 -18.38362 -17.24821 -16.88282 -16.84245 -16.15051 -15.47586 -14.82199 -14.49239 -14.33956 -13.62189 -13.43668 -13.24781 -13.16364 -12.86694 -12.63452 -12.32890 -11.93549 -11.78222 -11.46568 -11.13187 -10.93007 -10.28848 -9.49237 -8.69239 -8.34842 -6.14195 1.23357 1.44279 1.44678 1.50311 1.55081 2.04218 2.27079 2.91994 2.99126 3.25337 3.70140 3.77133 4.04229 4.06431 4.17715 4.25811 4.43582 4.60665 4.73862 4.82958 4.88219 5.06486 5.20141 5.40764 5.58137 6.18897 6.24291 7.05812 7.10914 8.74279 Molecular weight = 215.07amu Principal moments of inertia in cm(-1) A = 0.073692 B = 0.006324 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.867322 B = 4426.434907 C = 4714.502117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.586 5.586 3 C 0.530 3.470 4 O -0.567 6.567 5 C -0.121 4.121 6 S -0.155 6.155 7 C -0.547 4.547 8 H 0.084 0.916 9 C 0.013 3.987 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.261 1.261 13 H -0.279 1.279 14 H -0.261 1.261 15 C 0.041 3.959 16 C -0.153 4.153 17 C -0.187 4.187 18 H 0.074 0.926 19 H 0.100 0.900 20 H 0.078 0.922 21 H 0.108 0.892 22 H 0.109 0.891 23 H 0.271 0.729 24 H 0.107 0.893 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 -15.917 0.346 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.318 5.318 3 C 0.318 3.682 4 O -0.445 6.445 5 C -0.272 4.272 6 S 0.073 5.927 7 C -0.695 4.695 8 H 0.102 0.898 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.822 3.178 12 H -0.186 1.186 13 H -0.204 1.204 14 H -0.186 1.186 15 C -0.063 4.063 16 C -0.191 4.191 17 C -0.226 4.226 18 H 0.093 0.907 19 H 0.118 0.882 20 H 0.097 0.903 21 H 0.127 0.873 22 H 0.127 0.873 23 H 0.080 0.920 24 H 0.125 0.875 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.127 0.873 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.185 -15.805 0.340 17.802 hybrid contribution -1.452 1.028 0.014 1.779 sum -9.637 -14.778 0.354 17.646 Atomic orbital electron populations 1.22144 0.76935 1.04859 1.03633 1.47311 1.08095 1.03751 1.72690 1.20195 0.87319 0.85352 0.75348 1.90665 1.15795 1.87514 1.50541 1.23369 1.02681 0.94710 1.06487 1.85613 1.12740 0.97331 1.97051 1.23170 0.94639 0.92568 1.59122 0.89776 1.26163 0.97648 1.01728 0.93643 1.70185 1.14195 1.22565 1.47867 0.84978 0.77545 0.75742 0.79560 1.18565 1.20402 1.18560 1.21712 0.97719 0.80888 1.05962 1.23498 1.01040 0.95812 0.98713 1.23456 1.04384 1.02314 0.92441 0.90744 0.88182 0.90299 0.87334 0.87253 0.91959 0.87468 0.86356 0.86223 0.87326 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 9.49 127.77 1.21 2.44 15 2 N -0.59 -16.77 3.21 -822.57 -2.64 -19.41 15 3 C 0.53 21.14 7.69 87.66 0.67 21.81 15 4 O -0.57 -27.97 15.57 -3.04 -0.05 -28.02 15 5 C -0.12 -5.01 4.71 71.24 0.34 -4.67 15 6 S -0.15 -8.79 20.57 -56.49 -1.16 -9.96 15 7 C -0.55 -31.55 9.50 67.95 0.65 -30.90 15 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 15 9 C 0.01 0.74 5.49 84.86 0.47 1.21 15 10 N -0.91 -56.54 13.22 21.65 0.29 -56.26 15 11 Si 1.00 43.64 29.55 68.60 2.03 45.67 15 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 13 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 14 H -0.26 -10.76 7.11 99.48 0.71 -10.06 15 15 C 0.04 1.03 6.21 44.99 0.28 1.31 15 16 C -0.15 -2.29 9.72 30.59 0.30 -1.99 15 17 C -0.19 -3.44 10.13 30.59 0.31 -3.13 15 18 H 0.07 1.19 8.14 -2.39 -0.02 1.17 15 19 H 0.10 1.26 6.33 -2.38 -0.02 1.25 15 20 H 0.08 1.48 6.44 -2.39 -0.02 1.46 15 21 H 0.11 4.04 8.11 -2.39 -0.02 4.02 15 22 H 0.11 4.05 7.40 -2.40 -0.02 4.03 15 23 H 0.27 15.63 8.31 -92.71 -0.77 14.85 15 24 H 0.11 3.18 7.67 -2.39 -0.02 3.16 15 25 H 0.12 1.34 6.46 -2.39 -0.02 1.33 15 26 H 0.12 1.41 8.14 -2.39 -0.02 1.39 15 27 H 0.11 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.10 1.76 8.12 -2.38 -0.02 1.74 15 Total: -1.00 -76.38 257.46 3.83 -72.54 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.15 Total: 9.35 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.22 Total: -13.93 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.36 Total: -75.67 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.96 kcal Total: -76.38 3.83 -72.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388456956.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.881 kcal (2) G-P(sol) polarization free energy of solvation -76.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds