Wall clock time and date at job start Mon Mar 30 2020 17:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47676 * 2 1 4 4 C 1.42897 * 114.00467 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.57129 * 29.83682 * 4 3 2 6 6 C 1.53091 * 109.51842 * 269.68581 * 4 3 2 7 7 O 1.42909 * 109.41072 * 182.48290 * 6 4 3 8 8 C 1.42898 * 114.10010 * 61.15692 * 7 6 4 9 9 C 1.53091 * 109.41405 * 298.84384 * 8 7 6 10 10 C 1.53171 * 109.16540 * 57.60551 * 9 8 7 11 11 H 1.09002 * 109.54823 * 183.06159 * 10 9 8 12 12 N 1.46504 * 109.54529 * 62.88591 * 10 9 8 13 13 C 1.36943 * 119.99781 * 85.00057 * 12 10 9 14 14 H 1.08002 * 119.99788 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99622 * 180.27904 * 13 12 10 16 16 N 1.31614 * 120.00467 * 359.72375 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.72266 * 15 13 12 18 18 H 1.48501 * 109.46896 * 89.99850 * 17 15 13 19 19 H 1.48499 * 109.47039 * 210.00011 * 17 15 13 20 20 H 1.48501 * 109.47275 * 329.99811 * 17 15 13 21 21 H 1.08994 * 109.47761 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46894 * 300.00215 * 1 2 3 23 23 H 1.09000 * 109.47114 * 59.99559 * 1 2 3 24 24 H 1.08994 * 109.46899 * 239.99484 * 2 1 3 25 25 H 1.09007 * 109.46828 * 120.00206 * 2 1 3 26 26 H 1.08997 * 109.48189 * 62.50197 * 6 4 3 27 27 H 1.08997 * 109.49226 * 302.46516 * 6 4 3 28 28 H 1.08995 * 109.48450 * 178.85584 * 8 7 6 29 29 H 1.09004 * 109.49043 * 58.82866 * 8 7 6 30 30 H 1.09000 * 109.52210 * 297.69723 * 9 8 7 31 31 H 1.08999 * 109.57315 * 177.54250 * 9 8 7 32 32 H 0.97000 * 120.00410 * 265.00382 * 12 10 9 33 33 H 0.96995 * 120.00147 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8651 0.6007 -0.5119 6 6 3.9408 1.5081 1.4421 7 8 5.3597 1.6790 1.4390 8 6 5.8003 2.8887 0.8189 9 6 5.3650 2.8961 -0.6488 10 6 3.8423 2.7468 -0.7224 11 1 3.5308 2.6967 -1.7658 12 7 3.2053 3.8966 -0.0756 13 6 2.9940 5.0499 -0.7830 14 1 3.2974 5.1120 -1.8177 15 6 2.3956 6.1413 -0.1685 16 7 2.0264 6.0659 1.0926 17 14 2.1144 7.7172 -1.1313 18 1 0.7810 7.6678 -1.7830 19 1 2.1712 8.8785 -0.2075 20 1 3.1675 7.8580 -2.1688 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.6881 0.5764 1.9482 27 1 3.4753 2.3436 1.9648 28 1 6.8869 2.9517 0.8762 29 1 5.3591 3.7426 1.3332 30 1 5.8382 2.0660 -1.1732 31 1 5.6616 3.8367 -1.1129 32 1 2.9331 3.8410 0.8538 33 1 1.6079 6.8284 1.5219 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388722550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:50 Heat of formation + Delta-G solvation = -84.415938 kcal Electronic energy + Delta-G solvation = -15394.844485 eV Core-core repulsion = 12842.007774 eV Total energy + Delta-G solvation = -2552.836711 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.31321 -36.96987 -34.63976 -32.08174 -31.13046 -29.50767 -28.55673 -24.49428 -23.23304 -22.98232 -22.18678 -18.88546 -17.29989 -16.55913 -15.95371 -15.38082 -15.04928 -14.56540 -14.37594 -13.82604 -13.33391 -12.88283 -12.69124 -12.14530 -12.10642 -11.70272 -11.43579 -11.17269 -10.87684 -10.79180 -10.77539 -10.45286 -10.09180 -9.97618 -9.70938 -9.37720 -8.87546 -8.59067 -6.90606 -5.71630 -2.99731 3.46053 3.50968 3.52487 3.91710 4.47959 4.62468 5.19204 5.21579 5.38390 5.43974 5.50274 5.54301 5.58898 5.66371 5.77187 5.83445 5.89211 6.08691 6.12741 6.18691 6.28730 6.36170 6.53442 6.68010 6.72324 6.81998 7.49049 7.73053 7.82512 8.46236 9.57792 10.14358 10.50307 11.51020 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.024977 B = 0.010712 C = 0.008427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.748472 B = 2613.288157 C = 3321.783685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.054 3.946 5 H 0.060 0.940 6 C 0.044 3.956 7 O -0.388 6.388 8 C 0.063 3.937 9 C -0.169 4.169 10 C 0.177 3.823 11 H 0.055 0.945 12 N -0.712 5.712 13 C -0.236 4.236 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.931 5.931 17 Si 0.905 3.095 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.283 1.283 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.386 0.614 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 -11.204 -1.427 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.274 6.274 4 C -0.005 4.005 5 H 0.078 0.922 6 C -0.033 4.033 7 O -0.307 6.307 8 C -0.013 4.013 9 C -0.210 4.210 10 C 0.066 3.934 11 H 0.073 0.927 12 N -0.354 5.354 13 C -0.367 4.367 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.209 1.209 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.221 0.779 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.713 -11.024 -1.464 11.446 hybrid contribution -0.314 0.841 -0.355 0.966 sum 2.398 -10.182 -1.818 10.618 Atomic orbital electron populations 1.21705 0.94059 1.01415 1.03472 1.22480 0.95586 0.85104 0.99217 1.88162 1.20028 1.24423 1.94790 1.23018 0.81616 0.99215 0.96633 0.92222 1.22929 0.81772 1.01926 0.96679 1.87810 1.21154 1.42094 1.79679 1.22537 0.98542 0.87090 0.93141 1.22820 0.99273 1.01875 0.97014 1.20335 0.90514 0.86271 0.96259 0.92712 1.42319 1.70737 1.09683 1.12614 1.19219 1.32625 0.90124 0.94719 0.91289 1.24711 1.01690 0.98296 0.96171 1.69662 1.46960 1.30761 1.10603 0.86214 0.77930 0.83457 0.78717 1.21811 1.21877 1.20861 0.91757 0.91763 0.91816 0.94007 0.94060 0.90042 0.91570 0.90047 0.91629 0.92834 0.90325 0.77937 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 37.16 0.38 -1.56 16 2 C 0.05 0.77 6.47 37.16 0.24 1.01 16 3 O -0.36 -6.82 9.80 -35.23 -0.35 -7.17 16 4 C 0.05 0.99 2.53 -26.60 -0.07 0.92 16 5 H 0.06 0.96 7.79 -51.93 -0.40 0.56 16 6 C 0.04 0.79 6.29 37.20 0.23 1.03 16 7 O -0.39 -7.07 10.77 -35.23 -0.38 -7.45 16 8 C 0.06 1.14 6.68 37.20 0.25 1.39 16 9 C -0.17 -3.07 5.81 -26.60 -0.15 -3.23 16 10 C 0.18 3.68 2.84 -67.75 -0.19 3.48 16 11 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 12 N -0.71 -18.07 4.26 -53.25 -0.23 -18.30 16 13 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 17 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16 25 H 0.04 0.53 7.96 -51.92 -0.41 0.12 16 26 H 0.08 1.26 7.96 -51.93 -0.41 0.84 16 27 H 0.07 1.34 6.72 -51.93 -0.35 0.99 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.35 7.75 -51.93 -0.40 0.95 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.39 10.51 6.27 -40.82 -0.26 10.25 16 33 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 270.70 15.07 4.08 4.08 Total: -1.00 -30.81 270.70 -5.89 -36.69 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.16 Total: 6.39 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 0.45 Total: -4.16 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.50 Total: -45.99 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.72 Total: -14.62 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.81 -5.89 -36.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388722550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.724 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds