Wall clock time and date at job start Mon Mar 30 2020 17:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47676 * 2 1 4 4 C 1.42897 * 114.00467 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.57129 * 29.83682 * 4 3 2 6 6 C 1.53091 * 109.51842 * 269.68581 * 4 3 2 7 7 O 1.42909 * 109.41072 * 182.48290 * 6 4 3 8 8 C 1.42898 * 114.10010 * 61.15692 * 7 6 4 9 9 C 1.53091 * 109.41405 * 298.84384 * 8 7 6 10 10 C 1.53171 * 109.16540 * 57.60551 * 9 8 7 11 11 H 1.09002 * 109.54823 * 183.06159 * 10 9 8 12 12 N 1.46504 * 109.54529 * 62.88591 * 10 9 8 13 13 C 1.36943 * 119.99781 * 85.00057 * 12 10 9 14 14 H 1.08002 * 119.99788 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99622 * 180.27904 * 13 12 10 16 16 N 1.31614 * 120.00467 * 359.72375 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.72266 * 15 13 12 18 18 H 1.48501 * 109.46896 * 89.99850 * 17 15 13 19 19 H 1.48499 * 109.47039 * 210.00011 * 17 15 13 20 20 H 1.48501 * 109.47275 * 329.99811 * 17 15 13 21 21 H 1.08994 * 109.47761 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46894 * 300.00215 * 1 2 3 23 23 H 1.09000 * 109.47114 * 59.99559 * 1 2 3 24 24 H 1.08994 * 109.46899 * 239.99484 * 2 1 3 25 25 H 1.09007 * 109.46828 * 120.00206 * 2 1 3 26 26 H 1.08997 * 109.48189 * 62.50197 * 6 4 3 27 27 H 1.08997 * 109.49226 * 302.46516 * 6 4 3 28 28 H 1.08995 * 109.48450 * 178.85584 * 8 7 6 29 29 H 1.09004 * 109.49043 * 58.82866 * 8 7 6 30 30 H 1.09000 * 109.52210 * 297.69723 * 9 8 7 31 31 H 1.08999 * 109.57315 * 177.54250 * 9 8 7 32 32 H 0.97000 * 120.00410 * 265.00382 * 12 10 9 33 33 H 0.96995 * 120.00147 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8651 0.6007 -0.5119 6 6 3.9408 1.5081 1.4421 7 8 5.3597 1.6790 1.4390 8 6 5.8003 2.8887 0.8189 9 6 5.3650 2.8961 -0.6488 10 6 3.8423 2.7468 -0.7224 11 1 3.5308 2.6967 -1.7658 12 7 3.2053 3.8966 -0.0756 13 6 2.9940 5.0499 -0.7830 14 1 3.2974 5.1120 -1.8177 15 6 2.3956 6.1413 -0.1685 16 7 2.0264 6.0659 1.0926 17 14 2.1144 7.7172 -1.1313 18 1 0.7810 7.6678 -1.7830 19 1 2.1712 8.8785 -0.2075 20 1 3.1675 7.8580 -2.1688 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.6881 0.5764 1.9482 27 1 3.4753 2.3436 1.9648 28 1 6.8869 2.9517 0.8762 29 1 5.3591 3.7426 1.3332 30 1 5.8382 2.0660 -1.1732 31 1 5.6616 3.8367 -1.1129 32 1 2.9331 3.8410 0.8538 33 1 1.6079 6.8284 1.5219 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388722550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:50 Heat of formation + Delta-G solvation = -106.242089 kcal Electronic energy + Delta-G solvation = -15395.790938 eV Core-core repulsion = 12842.007774 eV Total energy + Delta-G solvation = -2553.783163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78678 -38.32997 -36.43725 -33.95519 -32.38535 -31.18343 -30.15959 -26.27039 -25.05760 -24.35210 -23.40800 -20.48310 -19.32064 -17.96444 -17.34791 -16.87297 -16.72831 -16.11678 -15.80585 -15.52520 -15.17136 -14.35703 -14.13961 -13.55776 -13.47526 -13.12699 -12.98502 -12.84778 -12.62502 -12.41201 -12.18339 -12.02788 -11.92245 -11.81917 -11.24702 -10.99790 -10.79995 -10.03771 -8.97234 -7.90894 -5.18344 1.46536 1.48600 1.56469 2.56055 2.61622 3.11277 3.41867 3.80754 3.83088 3.99344 4.19390 4.21075 4.22986 4.26436 4.40295 4.50975 4.58139 4.76615 4.77685 4.86377 5.03206 5.06319 5.11563 5.21789 5.24726 5.29730 5.51770 6.09737 6.29784 6.49490 7.36582 8.11775 8.36111 9.32796 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.024977 B = 0.010712 C = 0.008427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.748472 B = 2613.288157 C = 3321.783685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.392 6.392 4 C 0.061 3.939 5 H 0.090 0.910 6 C 0.048 3.952 7 O -0.386 6.386 8 C 0.066 3.934 9 C -0.159 4.159 10 C 0.165 3.835 11 H 0.046 0.954 12 N -0.722 5.722 13 C -0.233 4.233 14 H 0.074 0.926 15 C -0.077 4.077 16 N -0.970 5.970 17 Si 0.971 3.029 18 H -0.291 1.291 19 H -0.297 1.297 20 H -0.268 1.268 21 H 0.098 0.902 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.033 0.967 28 H 0.113 0.887 29 H 0.030 0.970 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.373 0.627 33 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -12.732 -2.417 13.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.312 6.312 4 C 0.002 3.998 5 H 0.107 0.893 6 C -0.029 4.029 7 O -0.304 6.304 8 C -0.010 4.010 9 C -0.200 4.200 10 C 0.056 3.944 11 H 0.064 0.936 12 N -0.363 5.363 13 C -0.365 4.365 14 H 0.092 0.908 15 C -0.269 4.269 16 N -0.621 5.621 17 Si 0.800 3.200 18 H -0.219 1.219 19 H -0.224 1.224 20 H -0.193 1.193 21 H 0.117 0.883 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.051 0.949 28 H 0.131 0.869 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.206 0.794 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.599 -12.592 -2.493 13.332 hybrid contribution -0.579 1.199 -0.073 1.333 sum 3.020 -11.393 -2.566 12.063 Atomic orbital electron populations 1.21743 0.93419 1.03247 1.02073 1.22783 0.96205 0.83247 1.00959 1.88130 1.20425 1.27618 1.94992 1.22924 0.81754 0.98557 0.96520 0.89252 1.22930 0.81425 1.01961 0.96623 1.87816 1.21174 1.41752 1.79706 1.22538 1.00108 0.85916 0.92466 1.22682 0.97177 1.02669 0.97452 1.20642 0.91870 0.86210 0.95725 0.93586 1.42448 1.71259 1.10501 1.12061 1.19602 1.30994 0.90978 0.94950 0.90766 1.25504 1.02618 1.01588 0.97168 1.69829 1.48667 1.31338 1.12270 0.85176 0.77878 0.79432 0.77492 1.21853 1.22369 1.19300 0.88293 0.93200 0.93164 0.92148 0.92207 0.87129 0.94900 0.86879 0.95166 0.89492 0.91423 0.79432 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 10.28 71.98 0.74 -2.87 16 2 C 0.04 1.17 6.47 71.98 0.47 1.64 16 3 O -0.39 -14.70 9.80 -148.98 -1.46 -16.16 16 4 C 0.06 2.13 2.53 30.68 0.08 2.21 16 5 H 0.09 2.57 7.79 -2.38 -0.02 2.55 16 6 C 0.05 1.65 6.29 72.01 0.45 2.11 16 7 O -0.39 -13.26 10.77 -148.98 -1.60 -14.86 16 8 C 0.07 2.28 6.68 72.01 0.48 2.77 16 9 C -0.16 -5.51 5.81 30.68 0.18 -5.33 16 10 C 0.16 6.71 2.84 45.11 0.13 6.84 16 11 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 12 N -0.72 -37.27 4.26 -322.38 -1.37 -38.64 16 13 C -0.23 -13.17 9.93 84.03 0.83 -12.33 16 14 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 15 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 16 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 17 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 18 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.37 8.09 -2.39 -0.02 1.36 16 25 H 0.06 1.36 7.96 -2.38 -0.02 1.34 16 26 H 0.11 3.13 7.96 -2.39 -0.02 3.12 16 27 H 0.03 1.36 6.72 -2.39 -0.02 1.34 16 28 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.03 1.26 7.75 -2.38 -0.02 1.24 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.37 21.03 6.27 -92.71 -0.58 20.45 16 33 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -66.87 270.70 2.20 -64.68 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.50 Total: 25.43 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 3.83 Total: -9.02 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -1.09 Total: -99.22 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -3.06 Total: -31.02 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -66.87 2.20 -64.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388722550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.566 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds