Wall clock time and date at job start Mon Mar 30 2020 17:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.52090 * 29.87532 * 4 3 2 6 6 C 1.53088 * 109.52090 * 269.68484 * 4 3 2 7 7 O 1.42906 * 109.41375 * 182.48453 * 6 4 3 8 8 C 1.42898 * 114.09728 * 61.15743 * 7 6 4 9 9 C 1.53095 * 109.41534 * 298.84368 * 8 7 6 10 10 C 1.53173 * 109.16584 * 57.60894 * 9 8 7 11 11 H 1.09000 * 109.54417 * 62.88839 * 10 9 8 12 12 N 1.46498 * 109.61964 * 183.10892 * 10 9 8 13 13 C 1.36935 * 120.00242 * 274.60512 * 12 10 9 14 14 H 1.08006 * 119.99515 * 359.97438 * 13 12 10 15 15 C 1.38810 * 120.00372 * 179.97438 * 13 12 10 16 16 N 1.31612 * 120.00352 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99772 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47041 * 89.99878 * 17 15 13 19 19 H 1.48495 * 109.47165 * 210.00234 * 17 15 13 20 20 H 1.48504 * 109.47243 * 330.00439 * 17 15 13 21 21 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 22 22 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 26 26 H 1.09002 * 109.48087 * 302.46631 * 6 4 3 27 27 H 1.08998 * 109.48326 * 62.50333 * 6 4 3 28 28 H 1.08999 * 109.47939 * 178.85946 * 8 7 6 29 29 H 1.08999 * 109.48343 * 58.82460 * 8 7 6 30 30 H 1.09001 * 109.52017 * 297.69817 * 9 8 7 31 31 H 1.09001 * 109.52087 * 177.51827 * 9 8 7 32 32 H 0.97001 * 119.99797 * 94.59985 * 12 10 9 33 33 H 0.96998 * 120.00284 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8641 0.6009 -0.5126 6 6 3.9408 1.5082 1.4421 7 8 5.3596 1.6791 1.4389 8 6 5.8001 2.8889 0.8189 9 6 5.3648 2.8963 -0.6488 10 6 3.8422 2.7470 -0.7225 11 1 3.3682 3.6024 -0.2413 12 7 3.4219 2.6783 -2.1242 13 6 3.2020 3.8308 -2.8304 14 1 3.3380 4.7903 -2.3537 15 6 2.8042 3.7657 -4.1587 16 7 2.5924 4.8734 -4.8372 17 14 2.5697 2.1060 -4.9832 18 1 1.1665 1.6560 -4.7996 19 1 2.8649 2.2277 -6.4334 20 1 3.4913 1.1149 -4.3719 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3635 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.4752 2.3438 1.9646 27 1 3.6881 0.5765 1.9482 28 1 6.8868 2.9519 0.8761 29 1 5.3588 3.7426 1.3332 30 1 5.8381 2.0662 -1.1733 31 1 5.6614 3.8374 -1.1120 32 1 3.2995 1.8164 -2.5522 33 1 2.3148 4.8280 -5.7655 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388722566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:55 Heat of formation + Delta-G solvation = -83.320689 kcal Electronic energy + Delta-G solvation = -15286.763199 eV Core-core repulsion = 12733.973982 eV Total energy + Delta-G solvation = -2552.789217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45323 -37.15734 -35.01136 -32.15296 -31.28554 -30.04339 -29.05387 -24.79041 -23.17988 -22.46264 -21.88942 -19.93313 -17.74612 -16.66319 -16.20066 -15.73414 -15.10880 -14.60661 -14.48670 -13.79336 -13.56836 -12.95195 -12.93070 -12.54251 -12.24248 -11.98351 -11.45413 -11.34880 -11.08253 -10.92945 -10.87478 -10.69713 -10.18461 -10.02666 -9.69771 -9.58132 -8.93614 -8.88589 -7.25748 -5.75282 -3.10130 3.38112 3.41694 3.45675 3.73298 4.22263 4.60861 4.95012 5.01740 5.20199 5.26071 5.32219 5.42733 5.42931 5.49019 5.56816 5.67344 5.76091 5.85627 5.90359 6.03593 6.08535 6.18657 6.27656 6.32706 6.60573 6.81905 7.24514 7.61690 7.99076 8.43136 9.21054 9.94007 10.13958 11.43151 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.011831 C = 0.008626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.294642 B = 2366.051362 C = 3245.131937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.362 6.362 4 C 0.050 3.950 5 H 0.063 0.937 6 C 0.046 3.954 7 O -0.384 6.384 8 C 0.059 3.941 9 C -0.170 4.170 10 C 0.186 3.814 11 H 0.064 0.936 12 N -0.739 5.739 13 C -0.239 4.239 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.934 5.934 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.279 1.279 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.360 0.640 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -9.264 11.887 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.281 6.281 4 C -0.010 4.010 5 H 0.081 0.919 6 C -0.031 4.031 7 O -0.303 6.303 8 C -0.018 4.018 9 C -0.211 4.211 10 C 0.076 3.924 11 H 0.082 0.918 12 N -0.380 5.380 13 C -0.369 4.369 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.582 5.582 17 Si 0.715 3.285 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.206 1.206 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.193 0.807 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.571 -8.983 11.866 14.966 hybrid contribution -0.214 -1.197 -0.925 1.528 sum 1.357 -10.180 10.942 15.006 Atomic orbital electron populations 1.21721 0.93955 1.01715 1.03365 1.22485 0.95604 0.84674 0.99448 1.88035 1.20048 1.25234 1.94791 1.23159 0.81665 1.00332 0.95798 0.91924 1.22993 0.81670 1.01986 0.96493 1.87872 1.21113 1.41922 1.79378 1.22698 0.99553 0.86403 0.93196 1.22943 0.98994 1.03652 0.95482 1.20281 0.91689 0.94373 0.86081 0.91788 1.42609 1.82445 1.05428 1.07521 1.19052 1.38262 0.86317 0.93238 0.89188 1.24631 1.01547 0.96290 0.96574 1.69694 1.53339 1.25383 1.09825 0.86553 0.78059 0.85001 0.78921 1.21051 1.21799 1.20562 0.91502 0.91572 0.92009 0.93667 0.94001 0.92331 0.89457 0.89177 0.93163 0.91645 0.89889 0.80686 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 37.16 0.38 -1.51 16 2 C 0.05 0.78 6.47 37.16 0.24 1.02 16 3 O -0.36 -6.47 9.92 -35.23 -0.35 -6.82 16 4 C 0.05 0.85 2.31 -26.59 -0.06 0.79 16 5 H 0.06 1.07 7.79 -51.93 -0.40 0.66 16 6 C 0.05 0.67 6.47 37.20 0.24 0.91 16 7 O -0.38 -5.87 10.77 -35.23 -0.38 -6.25 16 8 C 0.06 0.84 6.84 37.21 0.25 1.10 16 9 C -0.17 -2.97 5.73 -26.59 -0.15 -3.12 16 10 C 0.19 3.72 2.53 -67.75 -0.17 3.54 16 11 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 12 N -0.74 -17.95 4.86 -53.25 -0.26 -18.21 16 13 C -0.24 -6.81 10.42 -15.06 -0.16 -6.97 16 14 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 15 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 16 N -0.93 -29.61 13.97 55.49 0.78 -28.83 16 17 Si 0.88 22.58 27.73 -169.99 -4.71 17.87 16 18 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.04 0.50 7.96 -51.93 -0.41 0.08 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.09 7.96 -51.93 -0.41 0.68 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.36 8.74 5.66 -40.82 -0.23 8.51 16 33 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 271.57 15.07 4.09 4.09 Total: -1.00 -31.88 271.57 -5.63 -37.51 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.27 Total: 4.84 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 0.48 Total: -4.18 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.52 Total: -47.05 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.73 Total: -13.08 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.88 -5.63 -37.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388722566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.813 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds