Wall clock time and date at job start Mon Mar 30 2020 17:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 108.83125 * 2 1 4 4 C 1.54257 * 108.86899 * 241.60140 * 2 1 3 5 5 S 1.83954 * 102.58232 * 263.71069 * 4 2 1 6 6 C 1.83954 * 94.80624 * 325.50794 * 5 4 2 7 7 C 1.52336 * 108.86574 * 118.52638 * 2 1 3 8 8 H 1.09003 * 108.86868 * 0.02562 * 7 2 1 9 9 N 1.46895 * 108.86775 * 241.63921 * 7 2 1 10 10 C 1.46905 * 111.00022 * 155.00169 * 9 7 2 11 11 C 1.53000 * 109.47182 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47123 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99662 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99913 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99805 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46794 * 60.00806 * 16 14 12 18 18 H 1.48505 * 109.46770 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47222 * 300.00349 * 16 14 12 20 20 H 1.08998 * 109.47060 * 301.47435 * 1 2 3 21 21 H 1.08994 * 109.46965 * 61.47240 * 1 2 3 22 22 H 1.08996 * 109.47044 * 181.47049 * 1 2 3 23 23 H 1.09006 * 110.78494 * 21.98697 * 4 2 1 24 24 H 1.08999 * 110.78486 * 145.43891 * 4 2 1 25 25 H 1.09004 * 110.78386 * 276.21681 * 6 5 4 26 26 H 1.09000 * 110.78946 * 152.77122 * 6 5 4 27 27 H 1.00899 * 111.00302 * 31.04573 * 9 7 2 28 28 H 1.08997 * 109.47035 * 300.00308 * 10 9 7 29 29 H 1.08997 * 109.46978 * 60.00232 * 10 9 7 30 30 H 1.08997 * 109.47734 * 300.00305 * 11 10 9 31 31 H 1.09006 * 109.46761 * 59.99826 * 11 10 9 32 32 H 0.96994 * 120.00287 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8819 1.0316 0.0000 4 6 2.0289 -0.6942 -1.2840 5 16 2.3446 -2.4141 -0.7129 6 6 2.9047 -1.9181 0.9677 7 6 2.0226 -0.6884 1.2665 8 1 1.1606 -1.0074 1.8524 9 7 2.8010 0.2736 2.0580 10 6 2.7971 -0.0903 3.4813 11 6 3.6165 0.9320 4.2714 12 6 3.6119 0.5590 5.7315 13 1 3.0782 -0.3196 6.0627 14 6 4.2898 1.3388 6.6443 15 7 4.9401 2.4085 6.2409 16 14 4.2846 0.8761 8.4542 17 1 4.8817 -0.4732 8.6217 18 1 5.0799 1.8685 9.2210 19 1 2.8880 0.8656 8.9584 20 1 -0.3633 0.5366 0.8765 21 1 -0.3633 0.4908 -0.9029 22 1 -0.3633 -1.0273 0.0264 23 1 1.2598 -0.6780 -2.0563 24 1 2.9481 -0.2307 -1.6422 25 1 3.9598 -1.6445 0.9587 26 1 2.7165 -2.7136 1.6886 27 1 2.4585 1.2131 1.9241 28 1 1.7718 -0.0989 3.8512 29 1 3.2360 -1.0804 3.6044 30 1 4.6417 0.9401 3.9014 31 1 3.1780 1.9223 4.1483 32 1 5.4167 2.9573 6.8832 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393349413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:09 Heat of formation + Delta-G solvation = -17.450488 kcal Electronic energy + Delta-G solvation = -12464.800366 eV Core-core repulsion = 10357.620367 eV Total energy + Delta-G solvation = -2107.180000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.14110 -34.48199 -32.65142 -30.16548 -28.30314 -27.17402 -24.59376 -22.54287 -20.61248 -19.64291 -16.87422 -16.30362 -15.43767 -15.11280 -14.57839 -14.16353 -13.76131 -13.47762 -13.03001 -12.81113 -12.19024 -12.00048 -11.78359 -11.35922 -11.31953 -11.02780 -10.95398 -10.85408 -10.57419 -10.08650 -9.88591 -9.38755 -9.18925 -8.38202 -7.97315 -7.69039 -6.02478 -4.05497 1.93453 2.32894 3.31851 3.36363 3.38618 4.36919 4.46985 4.52896 4.72113 4.92475 5.18882 5.33503 5.35834 5.42433 5.42988 5.54024 5.78087 5.80818 5.91248 6.04855 6.11675 6.25232 6.37242 6.91454 7.37602 7.66250 7.74685 7.86955 8.03168 8.39411 9.01413 9.58590 11.08878 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.058365 B = 0.005549 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.625722 B = 5044.943245 C = 5195.090034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.054 4.054 5 S -0.317 6.317 6 C -0.046 4.046 7 C 0.086 3.914 8 H 0.054 0.946 9 N -0.686 5.686 10 C 0.064 3.936 11 C 0.026 3.974 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.339 0.661 28 H 0.017 0.983 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.013 0.987 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 -4.782 -12.792 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.203 4.203 5 S -0.091 6.091 6 C -0.195 4.195 7 C -0.026 4.026 8 H 0.072 0.928 9 N -0.318 5.318 10 C -0.064 4.064 11 C -0.012 4.012 12 C -0.563 4.563 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.119 0.881 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.158 0.842 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.658 -6.032 -13.393 16.127 hybrid contribution -0.682 1.121 1.871 2.285 sum -7.341 -4.911 -11.522 14.517 Atomic orbital electron populations 1.22000 0.93972 1.02570 1.01909 1.21778 0.96884 1.00943 0.92421 0.89299 1.24163 1.04156 0.92384 0.99559 1.87821 1.87687 1.14718 1.18898 1.24279 1.03572 0.99076 0.92584 1.22108 0.94174 0.92240 0.94103 0.92831 1.60801 1.56240 1.04675 1.10117 1.22242 0.98469 1.01068 0.84621 1.19060 0.95558 0.93054 0.93479 1.21128 1.32110 1.10589 0.92429 0.92813 1.24996 0.95310 0.95004 0.98962 1.69957 1.33220 1.15484 1.34575 0.86644 0.78055 0.78252 0.84965 1.20190 1.21228 1.20282 0.92332 0.92403 0.91825 0.88059 0.89184 0.87911 0.88329 0.84183 0.96456 0.92267 0.95624 0.96831 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.59 37.16 0.32 -1.15 16 2 C -0.10 -1.14 2.87 -90.30 -0.26 -1.40 16 3 H 0.09 1.00 7.27 -51.93 -0.38 0.63 16 4 C -0.05 -0.59 6.97 37.82 0.26 -0.32 16 5 S -0.32 -4.19 23.27 -107.50 -2.50 -6.69 16 6 C -0.05 -0.65 6.71 37.81 0.25 -0.40 16 7 C 0.09 1.20 2.66 -67.40 -0.18 1.02 16 8 H 0.05 0.78 7.15 -51.93 -0.37 0.41 16 9 N -0.69 -11.56 6.20 -106.39 -0.66 -12.22 16 10 C 0.06 1.31 5.40 -3.82 -0.02 1.29 16 11 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 12 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.10 0.92 7.75 -51.93 -0.40 0.52 16 24 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.10 1.55 8.05 -51.93 -0.42 1.14 16 26 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.34 5.47 7.86 -39.29 -0.31 5.17 16 28 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 29 H 0.06 1.21 7.87 -51.93 -0.41 0.80 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 273.60 15.07 4.12 4.12 Total: -1.00 -29.41 273.60 -8.70 -38.11 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.20 Total: 0.11 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.18 Total: -13.93 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.08 Total: -38.26 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -2.50 Total: -6.69 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.41 -8.70 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393349413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.660 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds