Wall clock time and date at job start Mon Mar 30 2020 17:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 108.83125 * 2 1 4 4 C 1.54257 * 108.86899 * 241.60140 * 2 1 3 5 5 S 1.83954 * 102.58232 * 263.71069 * 4 2 1 6 6 C 1.83954 * 94.80624 * 325.50794 * 5 4 2 7 7 C 1.52336 * 108.86574 * 118.52638 * 2 1 3 8 8 H 1.09003 * 108.86868 * 0.02562 * 7 2 1 9 9 N 1.46895 * 108.86775 * 241.63921 * 7 2 1 10 10 C 1.46905 * 111.00022 * 155.00169 * 9 7 2 11 11 C 1.53000 * 109.47182 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47123 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99662 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99913 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99805 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46794 * 60.00806 * 16 14 12 18 18 H 1.48505 * 109.46770 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47222 * 300.00349 * 16 14 12 20 20 H 1.08998 * 109.47060 * 301.47435 * 1 2 3 21 21 H 1.08994 * 109.46965 * 61.47240 * 1 2 3 22 22 H 1.08996 * 109.47044 * 181.47049 * 1 2 3 23 23 H 1.09006 * 110.78494 * 21.98697 * 4 2 1 24 24 H 1.08999 * 110.78486 * 145.43891 * 4 2 1 25 25 H 1.09004 * 110.78386 * 276.21681 * 6 5 4 26 26 H 1.09000 * 110.78946 * 152.77122 * 6 5 4 27 27 H 1.00899 * 111.00302 * 31.04573 * 9 7 2 28 28 H 1.08997 * 109.47035 * 300.00308 * 10 9 7 29 29 H 1.08997 * 109.46978 * 60.00232 * 10 9 7 30 30 H 1.08997 * 109.47734 * 300.00305 * 11 10 9 31 31 H 1.09006 * 109.46761 * 59.99826 * 11 10 9 32 32 H 0.96994 * 120.00287 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8819 1.0316 0.0000 4 6 2.0289 -0.6942 -1.2840 5 16 2.3446 -2.4141 -0.7129 6 6 2.9047 -1.9181 0.9677 7 6 2.0226 -0.6884 1.2665 8 1 1.1606 -1.0074 1.8524 9 7 2.8010 0.2736 2.0580 10 6 2.7971 -0.0903 3.4813 11 6 3.6165 0.9320 4.2714 12 6 3.6119 0.5590 5.7315 13 1 3.0782 -0.3196 6.0627 14 6 4.2898 1.3388 6.6443 15 7 4.9401 2.4085 6.2409 16 14 4.2846 0.8761 8.4542 17 1 4.8817 -0.4732 8.6217 18 1 5.0799 1.8685 9.2210 19 1 2.8880 0.8656 8.9584 20 1 -0.3633 0.5366 0.8765 21 1 -0.3633 0.4908 -0.9029 22 1 -0.3633 -1.0273 0.0264 23 1 1.2598 -0.6780 -2.0563 24 1 2.9481 -0.2307 -1.6422 25 1 3.9598 -1.6445 0.9587 26 1 2.7165 -2.7136 1.6886 27 1 2.4585 1.2131 1.9241 28 1 1.7718 -0.0989 3.8512 29 1 3.2360 -1.0804 3.6044 30 1 4.6417 0.9401 3.9014 31 1 3.1780 1.9223 4.1483 32 1 5.4167 2.9573 6.8832 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393349413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:09 Heat of formation + Delta-G solvation = -35.754028 kcal Electronic energy + Delta-G solvation = -12465.594067 eV Core-core repulsion = 10357.620367 eV Total energy + Delta-G solvation = -2107.973701 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31193 -36.09481 -34.48337 -31.66820 -29.79234 -28.10661 -26.37750 -23.91716 -22.29968 -20.76163 -18.55499 -17.87096 -16.63970 -16.53116 -16.30063 -15.37612 -15.03196 -14.80085 -14.39700 -14.23270 -13.67502 -13.22267 -13.13893 -12.83633 -12.73564 -12.55939 -12.27212 -12.15313 -11.99100 -11.79458 -11.42544 -11.25511 -10.87238 -10.56387 -9.38180 -8.73945 -8.20978 -6.32516 0.91931 1.31687 1.40445 1.43263 1.51257 2.40105 3.12677 3.22429 3.50502 3.80203 3.89339 4.11982 4.24080 4.49153 4.51340 4.56080 4.63549 4.67329 4.79376 4.83737 5.03245 5.06753 5.08834 5.30545 5.44229 5.65888 5.77117 6.09840 6.23645 6.48051 6.84592 7.36964 8.90862 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.058365 B = 0.005549 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.625722 B = 5044.943245 C = 5195.090034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.044 4.044 5 S -0.333 6.333 6 C -0.048 4.048 7 C 0.089 3.911 8 H 0.052 0.948 9 N -0.688 5.688 10 C 0.084 3.916 11 C 0.032 3.968 12 C -0.547 4.547 13 H 0.060 0.940 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.266 1.266 20 H 0.053 0.947 21 H 0.079 0.921 22 H 0.059 0.941 23 H 0.125 0.875 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.344 0.656 28 H 0.020 0.980 29 H 0.057 0.943 30 H -0.005 1.005 31 H -0.007 1.007 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.305 -5.241 -13.112 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.192 4.192 5 S -0.108 6.108 6 C -0.196 4.196 7 C -0.023 4.023 8 H 0.070 0.930 9 N -0.321 5.321 10 C -0.045 4.045 11 C -0.005 4.005 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.790 3.210 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.191 1.191 20 H 0.072 0.928 21 H 0.098 0.902 22 H 0.079 0.921 23 H 0.144 0.856 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.163 0.837 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.728 -6.503 -13.732 17.046 hybrid contribution -0.345 1.281 1.894 2.313 sum -8.072 -5.222 -11.838 15.250 Atomic orbital electron populations 1.21966 0.92567 1.02596 1.02840 1.21732 0.97969 1.00738 0.91346 0.88855 1.24280 1.05228 0.90050 0.99641 1.87892 1.87606 1.17071 1.18229 1.24187 1.02759 0.99175 0.93515 1.22208 0.93559 0.91602 0.94936 0.93047 1.60692 1.57553 1.05656 1.08223 1.21829 0.97403 0.99079 0.86182 1.18908 0.94478 0.93546 0.93572 1.21588 1.32215 1.10869 0.93850 0.92220 1.25949 0.94730 0.94805 1.04088 1.70091 1.34032 1.16639 1.36340 0.85501 0.78565 0.78193 0.78788 1.19247 1.20782 1.19128 0.92781 0.90238 0.92144 0.85646 0.88599 0.89302 0.88396 0.83663 0.96154 0.92444 0.98692 0.98889 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.59 71.98 0.62 -1.86 16 2 C -0.10 -2.02 2.87 -10.59 -0.03 -2.05 16 3 H 0.09 1.90 7.27 -2.39 -0.02 1.88 16 4 C -0.04 -0.84 6.97 72.41 0.50 -0.33 16 5 S -0.33 -8.32 23.27 -56.49 -1.31 -9.64 16 6 C -0.05 -1.31 6.71 72.41 0.49 -0.82 16 7 C 0.09 2.38 2.66 45.12 0.12 2.50 16 8 H 0.05 1.43 7.15 -2.39 -0.02 1.42 16 9 N -0.69 -22.98 6.20 -490.51 -3.04 -26.03 16 10 C 0.08 3.43 5.40 86.30 0.47 3.90 16 11 C 0.03 1.71 5.23 29.85 0.16 1.86 16 12 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 13 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 14 C 0.00 0.14 5.46 84.65 0.46 0.60 16 15 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 16 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 21 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.13 1.82 7.75 -2.38 -0.02 1.80 16 24 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.09 2.69 8.05 -2.39 -0.02 2.67 16 26 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.34 10.95 7.86 -89.69 -0.71 10.24 16 28 H 0.02 0.82 8.04 -2.39 -0.02 0.80 16 29 H 0.06 2.36 7.87 -2.39 -0.02 2.34 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -62.76 273.60 1.35 -61.42 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.38 Total: 11.54 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 3.02 Total: -27.02 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -2.76 Total: -82.37 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.31 Total: -9.64 kcal Total: -62.76 1.35 -61.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393349413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.661 kcal (2) G-P(sol) polarization free energy of solvation -62.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds