Wall clock time and date at job start Mon Mar 30 2020 17:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99605 * 2 1 4 4 H 1.09003 * 110.36885 * 27.82232 * 3 2 1 5 5 C 1.54377 * 110.32539 * 265.63736 * 3 2 1 6 6 N 1.48562 * 104.59407 * 217.25547 * 5 3 2 7 7 C 1.46895 * 111.00142 * 159.03785 * 6 5 3 8 8 C 1.53002 * 109.47351 * 174.70363 * 7 6 5 9 9 C 1.50699 * 109.47233 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99941 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99969 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00071 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99883 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47357 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47050 * 119.99858 * 13 11 9 16 16 H 1.48504 * 109.46762 * 239.99306 * 13 11 9 17 17 C 1.48562 * 104.22433 * 39.48055 * 6 5 3 18 18 C 1.54266 * 110.32008 * 149.99987 * 3 2 1 19 19 H 1.09000 * 110.32532 * 359.89479 * 18 3 2 20 20 O 1.42905 * 110.32330 * 237.79012 * 18 3 2 21 21 H 1.09003 * 109.46826 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47425 * 299.99789 * 1 2 3 23 23 H 1.09000 * 109.47214 * 59.99669 * 1 2 3 24 24 H 1.09000 * 110.40820 * 336.03168 * 5 3 2 25 25 H 1.08989 * 110.41015 * 98.47390 * 5 3 2 26 26 H 1.08998 * 109.47299 * 294.70969 * 7 6 5 27 27 H 1.09002 * 109.47092 * 54.70814 * 7 6 5 28 28 H 1.08999 * 109.46978 * 300.00232 * 8 7 6 29 29 H 1.09002 * 109.46654 * 60.00183 * 8 7 6 30 30 H 0.96999 * 120.00333 * 180.02562 * 12 11 9 31 31 H 1.08998 * 110.41528 * 201.73764 * 17 6 5 32 32 H 1.08997 * 110.50874 * 79.34552 * 17 6 5 33 33 H 0.96699 * 113.99813 * 179.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3389 2.0196 0.4769 5 6 2.3289 1.7506 -1.4435 6 7 3.6077 2.4983 -1.3309 7 6 4.2967 2.5610 -2.6268 8 6 5.5379 3.4468 -2.5022 9 6 6.2443 3.5117 -3.8318 10 1 5.8474 2.9750 -4.6809 11 6 7.3973 4.2560 -3.9643 12 7 7.8803 4.9098 -2.9305 13 14 8.2725 4.3369 -5.6126 14 1 7.5317 3.5201 -6.6071 15 1 8.3299 5.7473 -6.0739 16 1 9.6523 3.8073 -5.4669 17 6 4.3999 1.7201 -0.3440 18 6 3.3726 1.2854 0.7233 19 1 3.5972 0.2802 1.0800 20 8 3.3692 2.2088 1.8140 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 2.4519 0.8822 -2.0906 25 1 1.5408 2.4005 -1.8236 26 1 4.5955 1.5571 -2.9284 27 1 3.6247 2.9804 -3.3756 28 1 5.2390 4.4507 -2.2007 29 1 6.2098 3.0274 -1.7534 30 1 8.6912 5.4338 -3.0237 31 1 5.1710 2.3470 0.1037 32 1 4.8485 0.8469 -0.8176 33 1 4.2009 2.2390 2.3064 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395381344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:14 Heat of formation + Delta-G solvation = -92.980954 kcal Electronic energy + Delta-G solvation = -14727.731525 eV Core-core repulsion = 12174.523407 eV Total energy + Delta-G solvation = -2553.208117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48582 -36.97135 -35.77563 -33.19821 -30.99962 -28.25550 -28.02544 -26.33810 -24.20627 -21.80950 -20.76061 -19.92946 -17.45405 -16.55466 -16.01525 -15.89476 -15.20582 -14.68244 -14.45916 -14.14845 -13.69048 -13.04395 -12.73064 -12.38969 -12.14155 -11.82865 -11.63075 -11.54323 -11.05771 -10.91774 -10.58329 -10.47899 -9.95239 -9.80156 -9.74696 -9.33156 -9.11277 -8.34560 -7.94561 -5.99786 -4.02414 3.31155 3.38458 3.42258 3.44593 4.37105 4.47199 4.68471 4.74166 4.93694 5.16316 5.21380 5.27615 5.36249 5.45773 5.53825 5.70217 5.84043 5.91829 5.97107 6.10628 6.33642 6.38401 6.90366 7.08557 7.31718 7.41144 7.72605 7.77762 7.87535 8.06787 8.42599 9.04944 9.61421 11.11678 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.055243 B = 0.005990 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.728194 B = 4673.080414 C = 5034.315398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.089 3.911 4 H 0.084 0.916 5 C 0.013 3.987 6 N -0.501 5.501 7 C 0.051 3.949 8 C 0.029 3.971 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.009 3.991 18 C 0.102 3.898 19 H 0.071 0.929 20 O -0.559 6.559 21 H 0.084 0.916 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.024 0.976 27 H 0.063 0.937 28 H 0.025 0.975 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.203 -8.438 6.875 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.030 3.970 4 H 0.102 0.898 5 C -0.116 4.116 6 N -0.226 5.226 7 C -0.076 4.076 8 C -0.008 4.008 9 C -0.561 4.561 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.119 4.119 18 C 0.042 3.958 19 H 0.089 0.911 20 O -0.365 6.365 21 H 0.103 0.897 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.645 -7.836 6.868 15.626 hybrid contribution 1.101 -0.613 -1.089 1.666 sum -10.544 -8.449 5.779 14.695 Atomic orbital electron populations 1.22790 0.80876 1.02561 1.00182 1.87873 1.19895 1.27535 1.94977 1.22745 0.94623 0.84410 0.95187 0.89841 1.23543 0.95096 0.97392 0.95566 1.65509 1.02565 1.44228 1.10264 1.22550 0.97761 0.99280 0.88001 1.19049 0.89968 0.94935 0.96846 1.21230 1.08915 1.29718 0.96230 0.92732 1.24993 0.97265 0.95464 0.96570 1.69982 1.22047 1.31536 1.29661 0.86537 0.79507 0.77801 0.84152 1.19776 1.20953 1.21027 1.23763 0.96536 0.97264 0.94352 1.22496 0.94164 0.92122 0.87015 0.91123 1.86448 1.40881 1.63960 1.45201 0.89721 0.93925 0.93851 0.92992 0.90022 0.95784 0.91873 0.95641 0.96632 0.93037 0.88978 0.93036 0.77044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 101.05 1.10 1.42 16 2 O -0.38 -5.27 10.31 -35.23 -0.36 -5.64 16 3 C 0.09 1.30 3.35 -25.35 -0.08 1.21 16 4 H 0.08 1.21 7.66 -51.93 -0.40 0.81 16 5 C 0.01 0.21 6.23 -2.18 -0.01 0.19 16 6 N -0.50 -9.61 5.37 -229.98 -1.24 -10.85 16 7 C 0.05 1.12 4.75 -3.83 -0.02 1.10 16 8 C 0.03 0.78 5.03 -27.88 -0.14 0.64 16 9 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 10 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 13 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.01 0.16 5.48 -2.18 -0.01 0.15 16 18 C 0.10 1.49 4.23 -25.35 -0.11 1.39 16 19 H 0.07 0.95 7.98 -51.93 -0.41 0.54 16 20 O -0.56 -7.98 13.26 -35.23 -0.47 -8.45 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.04 0.38 8.11 -51.93 -0.42 -0.04 16 23 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.83 7.94 -51.93 -0.41 0.42 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.02 0.52 7.88 -51.93 -0.41 0.11 16 27 H 0.06 1.36 8.13 -51.93 -0.42 0.93 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.02 0.43 7.26 -51.93 -0.38 0.05 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.09 1.64 7.70 -51.93 -0.40 1.25 16 32 H 0.05 0.88 7.83 -51.93 -0.41 0.48 16 33 H 0.38 3.83 9.12 45.56 0.42 4.24 16 LS Contribution 275.77 15.07 4.16 4.16 Total: -1.00 -32.30 275.77 -6.36 -38.66 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.48 Total: -0.72 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 0.31 Total: -7.59 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.50 Total: -37.17 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.83 Total: -14.08 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.30 -6.36 -38.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395381344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.321 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds