Wall clock time and date at job start Mon Mar 30 2020 17:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99605 * 2 1 4 4 H 1.09003 * 110.36885 * 27.82232 * 3 2 1 5 5 C 1.54377 * 110.32539 * 265.63736 * 3 2 1 6 6 N 1.48562 * 104.59407 * 217.25547 * 5 3 2 7 7 C 1.46895 * 111.00142 * 159.03785 * 6 5 3 8 8 C 1.53002 * 109.47351 * 174.70363 * 7 6 5 9 9 C 1.50699 * 109.47233 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99941 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99969 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00071 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99883 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47357 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47050 * 119.99858 * 13 11 9 16 16 H 1.48504 * 109.46762 * 239.99306 * 13 11 9 17 17 C 1.48562 * 104.22433 * 39.48055 * 6 5 3 18 18 C 1.54266 * 110.32008 * 149.99987 * 3 2 1 19 19 H 1.09000 * 110.32532 * 359.89479 * 18 3 2 20 20 O 1.42905 * 110.32330 * 237.79012 * 18 3 2 21 21 H 1.09003 * 109.46826 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47425 * 299.99789 * 1 2 3 23 23 H 1.09000 * 109.47214 * 59.99669 * 1 2 3 24 24 H 1.09000 * 110.40820 * 336.03168 * 5 3 2 25 25 H 1.08989 * 110.41015 * 98.47390 * 5 3 2 26 26 H 1.08998 * 109.47299 * 294.70969 * 7 6 5 27 27 H 1.09002 * 109.47092 * 54.70814 * 7 6 5 28 28 H 1.08999 * 109.46978 * 300.00232 * 8 7 6 29 29 H 1.09002 * 109.46654 * 60.00183 * 8 7 6 30 30 H 0.96999 * 120.00333 * 180.02562 * 12 11 9 31 31 H 1.08998 * 110.41528 * 201.73764 * 17 6 5 32 32 H 1.08997 * 110.50874 * 79.34552 * 17 6 5 33 33 H 0.96699 * 113.99813 * 179.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3389 2.0196 0.4769 5 6 2.3289 1.7506 -1.4435 6 7 3.6077 2.4983 -1.3309 7 6 4.2967 2.5610 -2.6268 8 6 5.5379 3.4468 -2.5022 9 6 6.2443 3.5117 -3.8318 10 1 5.8474 2.9750 -4.6809 11 6 7.3973 4.2560 -3.9643 12 7 7.8803 4.9098 -2.9305 13 14 8.2725 4.3369 -5.6126 14 1 7.5317 3.5201 -6.6071 15 1 8.3299 5.7473 -6.0739 16 1 9.6523 3.8073 -5.4669 17 6 4.3999 1.7201 -0.3440 18 6 3.3726 1.2854 0.7233 19 1 3.5972 0.2802 1.0800 20 8 3.3692 2.2088 1.8140 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 2.4519 0.8822 -2.0906 25 1 1.5408 2.4005 -1.8236 26 1 4.5955 1.5571 -2.9284 27 1 3.6247 2.9804 -3.3756 28 1 5.2390 4.4507 -2.2007 29 1 6.2098 3.0274 -1.7534 30 1 8.6912 5.4338 -3.0237 31 1 5.1710 2.3470 0.1037 32 1 4.8485 0.8469 -0.8176 33 1 4.2009 2.2390 2.3064 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395381344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:14 Heat of formation + Delta-G solvation = -119.509787 kcal Electronic energy + Delta-G solvation = -14728.881901 eV Core-core repulsion = 12174.523407 eV Total energy + Delta-G solvation = -2554.358494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72118 -38.09820 -37.09599 -35.24205 -32.72684 -29.84723 -29.30617 -27.39036 -26.01710 -23.44804 -22.06812 -21.50300 -18.59897 -18.57494 -17.30445 -17.15128 -16.58539 -16.24363 -15.86886 -15.38709 -15.08351 -14.53459 -14.24251 -14.12539 -13.62453 -13.17123 -13.04402 -13.01454 -12.76228 -12.44126 -12.36854 -11.83260 -11.65690 -11.42815 -11.29078 -11.00472 -10.66717 -10.56699 -9.46025 -8.21186 -6.33018 1.40217 1.40708 1.54094 2.37773 2.44463 3.12004 3.12357 3.39043 3.54340 3.76960 4.01100 4.23347 4.39084 4.43128 4.47712 4.53892 4.58966 4.64953 4.68577 4.80446 4.85279 4.91947 5.02429 5.42210 5.56055 5.74656 5.85081 6.03085 6.18118 6.26455 6.82132 6.83772 7.36450 8.91304 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.055243 B = 0.005990 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.728194 B = 4673.080414 C = 5034.315398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.096 3.904 4 H 0.087 0.913 5 C 0.015 3.985 6 N -0.520 5.520 7 C 0.068 3.932 8 C 0.038 3.962 9 C -0.546 4.546 10 H 0.060 0.940 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.007 3.993 18 C 0.110 3.890 19 H 0.088 0.912 20 O -0.570 6.570 21 H 0.105 0.895 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.026 0.974 27 H 0.065 0.935 28 H -0.009 1.009 29 H -0.006 1.006 30 H 0.264 0.736 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 -9.391 6.331 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C 0.037 3.963 4 H 0.105 0.895 5 C -0.114 4.114 6 N -0.245 5.245 7 C -0.059 4.059 8 C 0.001 3.999 9 C -0.584 4.584 10 H 0.079 0.921 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.121 4.121 18 C 0.050 3.950 19 H 0.106 0.894 20 O -0.378 6.378 21 H 0.123 0.877 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.010 0.990 29 H 0.012 0.988 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -12.463 -8.801 6.341 16.522 hybrid contribution 1.312 -0.320 -0.853 1.597 sum -11.150 -9.121 5.488 15.416 Atomic orbital electron populations 1.23052 0.78882 1.04239 1.01028 1.87855 1.22068 1.26658 1.94972 1.22587 0.94662 0.85128 0.93931 0.89547 1.23596 0.93503 0.97313 0.96963 1.65393 1.03940 1.46069 1.09048 1.22180 0.95972 0.98112 0.89685 1.18864 0.91609 0.93880 0.95558 1.21644 1.09584 1.30049 0.97117 0.92145 1.25967 0.98077 0.94803 1.00743 1.70115 1.22658 1.32216 1.32166 0.85360 0.78215 0.78105 0.79110 1.18567 1.20308 1.20259 1.23793 0.96964 0.96602 0.94773 1.22419 0.93422 0.92796 0.86353 0.89400 1.86409 1.42357 1.64011 1.45064 0.87703 0.92991 0.93108 0.92834 0.88924 0.95569 0.91629 0.99019 0.98810 0.92698 0.90559 0.93213 0.75080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.85 113.37 1.23 1.64 16 2 O -0.40 -9.95 10.31 -148.98 -1.54 -11.49 16 3 C 0.10 2.62 3.35 31.49 0.11 2.73 16 4 H 0.09 2.32 7.66 -2.39 -0.02 2.31 16 5 C 0.01 0.45 6.23 86.45 0.54 0.98 16 6 N -0.52 -19.90 5.37 -881.52 -4.73 -24.63 16 7 C 0.07 3.00 4.75 86.30 0.41 3.41 16 8 C 0.04 2.10 5.03 29.85 0.15 2.25 16 9 C -0.55 -31.60 9.11 25.60 0.23 -31.37 16 10 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 11 C 0.00 0.12 5.46 84.65 0.46 0.59 16 12 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 13 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 C 0.01 0.25 5.48 86.45 0.47 0.72 16 18 C 0.11 3.08 4.23 31.49 0.13 3.21 16 19 H 0.09 2.19 7.98 -2.39 -0.02 2.17 16 20 O -0.57 -15.51 13.26 -148.98 -1.98 -17.49 16 21 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.05 0.80 8.11 -2.39 -0.02 0.78 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 1.63 7.94 -2.39 -0.02 1.61 16 25 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.03 1.13 7.88 -2.39 -0.02 1.11 16 27 H 0.07 2.81 8.13 -2.39 -0.02 2.79 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H -0.01 -0.38 7.26 -2.39 -0.02 -0.39 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 31 H 0.08 2.81 7.70 -2.39 -0.02 2.80 16 32 H 0.05 1.71 7.83 -2.39 -0.02 1.69 16 33 H 0.40 7.56 9.12 -74.06 -0.68 6.88 16 Total: -1.00 -68.70 275.77 -1.79 -70.49 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.41 Total: 9.49 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 3.74 Total: -15.85 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -4.45 Total: -81.71 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -3.51 Total: -28.98 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.70 -1.79 -70.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395381344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.017 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds