Wall clock time and date at job start Mon Mar 30 2020 17:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00101 * 2 1 4 4 H 1.48498 * 109.47392 * 239.99768 * 3 2 1 5 5 H 1.48497 * 109.46878 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47180 * 119.99727 * 3 2 1 7 7 C 1.37877 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00594 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99919 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 60.09647 * 9 7 2 11 11 C 1.53120 * 109.50009 * 299.99707 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 15 15 C 1.46892 * 111.00192 * 185.84212 * 14 13 12 16 16 C 1.53003 * 109.47390 * 293.95474 * 15 14 13 17 17 C 1.52994 * 109.47262 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.47145 * 179.97438 * 17 16 15 19 19 C 1.46848 * 111.19688 * 61.74516 * 14 13 12 20 20 H 0.96996 * 120.00390 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 22 22 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 23 23 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 24 24 H 1.09002 * 109.50248 * 297.64565 * 12 11 9 25 25 H 1.08997 * 109.46051 * 60.83848 * 13 12 11 26 26 H 1.09006 * 109.46001 * 180.81597 * 13 12 11 27 27 H 1.08997 * 109.47341 * 53.95882 * 15 14 13 28 28 H 1.09004 * 109.47377 * 173.95469 * 15 14 13 29 29 H 1.09001 * 109.46681 * 299.99976 * 16 15 14 30 30 H 1.08991 * 109.46656 * 59.99603 * 16 15 14 31 31 H 1.08992 * 109.47416 * 299.99876 * 17 16 15 32 32 H 1.09004 * 109.47438 * 60.00036 * 17 16 15 33 33 H 1.08999 * 109.46555 * 58.27446 * 19 14 13 34 34 H 1.08998 * 109.46337 * 178.25654 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6256 -2.5589 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9342 1.2747 13 6 0.6944 -5.0564 1.2433 14 7 1.5101 -4.9357 0.0283 15 6 2.4274 -6.0752 -0.1053 16 6 3.4548 -6.0384 1.0279 17 6 4.4099 -7.2256 0.8891 18 9 5.3497 -7.1916 1.9250 19 6 2.2438 -3.6639 0.0054 20 1 -0.4850 0.8400 -0.0004 21 1 -0.3679 -1.7788 1.2287 22 1 0.9907 -2.4808 2.1406 23 1 -0.9407 -4.0148 2.1844 24 1 -0.9975 -4.0170 0.4049 25 1 1.3366 -4.9809 2.1208 26 1 0.1876 -6.0215 1.2460 27 1 1.8616 -7.0053 -0.0527 28 1 2.9421 -6.0169 -1.0644 29 1 4.0207 -5.1083 0.9752 30 1 2.9402 -6.0967 1.9868 31 1 3.8438 -8.1555 0.9421 32 1 4.9246 -7.1677 -0.0700 33 1 2.8788 -3.5950 0.8887 34 1 2.8622 -3.6174 -0.8910 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397592486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:16 Heat of formation + Delta-G solvation = -70.583400 kcal Electronic energy + Delta-G solvation = -14929.660737 eV Core-core repulsion = 12389.796639 eV Total energy + Delta-G solvation = -2539.864097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.58210 -38.55924 -34.58876 -32.52504 -30.47449 -29.85151 -25.40681 -24.94545 -22.86097 -21.52105 -20.84377 -18.33724 -16.49977 -16.30331 -15.78937 -15.17028 -14.75949 -14.39688 -14.20845 -13.63276 -13.18068 -12.84218 -12.39281 -12.17401 -11.92562 -11.57116 -11.16757 -10.95792 -10.91434 -10.83227 -10.66047 -10.39642 -10.03753 -9.80923 -9.45858 -9.03995 -8.70572 -8.29507 -7.66373 -5.96516 -4.02895 3.32886 3.37564 3.40059 4.37110 4.51584 4.73834 4.76551 4.93775 5.20734 5.32645 5.33377 5.63954 5.72732 5.80010 5.87201 5.98039 6.07527 6.27523 6.31549 6.43110 6.51616 6.72020 6.76579 6.97417 7.22185 7.40180 7.64689 7.75388 7.81225 8.09068 8.18363 8.48882 9.01012 9.61422 11.09475 Molecular weight = 215.14amu Principal moments of inertia in cm(-1) A = 0.035015 B = 0.007547 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.467949 B = 3709.110204 C = 4245.071571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.535 5.535 15 C 0.058 3.942 16 C -0.195 4.195 17 C 0.066 3.934 18 F -0.224 7.224 19 C 0.064 3.936 20 H 0.260 0.740 21 H 0.091 0.909 22 H 0.029 0.971 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.026 0.974 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.023 0.977 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.536 -11.634 1.395 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.068 4.068 14 N -0.257 5.257 15 C -0.071 4.071 16 C -0.235 4.235 17 C 0.011 3.989 18 F -0.205 7.205 19 C -0.063 4.063 20 H 0.070 0.930 21 H 0.109 0.891 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.063 -11.497 1.006 11.940 hybrid contribution 1.104 0.925 0.822 1.659 sum 4.167 -10.572 1.828 11.509 Atomic orbital electron populations 1.69873 1.05846 1.26442 1.50584 1.24927 0.94822 0.98929 0.95106 0.86695 0.79630 0.83308 0.78562 1.20293 1.21286 1.20389 1.21119 0.92790 0.90720 1.50856 0.92911 1.18667 0.92635 0.90322 0.94832 0.94839 1.21657 1.00061 0.94739 0.98471 1.21684 0.97206 0.96512 1.00204 1.22062 0.95545 0.98695 0.90517 1.62240 1.23251 1.02493 1.37759 1.22102 0.92746 0.95200 0.97012 1.22925 0.99117 0.99167 1.02286 1.21959 0.88877 0.99899 0.88213 1.92753 1.67887 1.97899 1.61966 1.22353 0.96570 0.88517 0.98861 0.92990 0.89087 0.95200 0.93544 0.92097 0.95610 0.92482 0.91306 0.90825 0.90115 0.90866 0.91067 0.90865 0.95837 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 11.35 55.43 0.63 -24.82 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.21 8.57 -34.44 -0.30 -14.51 16 8 H 0.05 1.43 7.75 -52.48 -0.41 1.02 16 9 C 0.05 1.36 2.27 -91.68 -0.21 1.15 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C -0.12 -2.31 6.10 -26.65 -0.16 -2.48 16 13 C 0.06 1.04 5.05 -3.84 -0.02 1.02 16 14 N -0.53 -9.67 4.86 -234.67 -1.14 -10.81 16 15 C 0.06 0.81 5.36 -3.83 -0.02 0.79 16 16 C -0.20 -2.62 4.97 -26.73 -0.13 -2.75 16 17 C 0.07 0.73 7.55 37.15 0.28 1.01 16 18 F -0.22 -3.11 17.36 2.25 0.04 -3.08 16 19 C 0.06 1.34 4.06 -3.83 -0.02 1.33 16 20 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 21 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.03 0.45 6.75 -51.93 -0.35 0.10 16 26 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 27 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.23 6.51 -51.93 -0.34 0.89 16 30 H 0.07 1.03 6.68 -51.93 -0.35 0.68 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.50 6.61 -51.93 -0.34 0.16 16 34 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 268.66 15.07 4.05 4.05 Total: -1.00 -28.57 268.66 -7.70 -36.27 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.46 Total: -2.39 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.80 Total: -15.55 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.51 Total: -35.63 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.57 -7.70 -36.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.309 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds