Wall clock time and date at job start Mon Mar 30 2020 17:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00101 * 2 1 4 4 H 1.48498 * 109.47392 * 239.99768 * 3 2 1 5 5 H 1.48497 * 109.46878 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47180 * 119.99727 * 3 2 1 7 7 C 1.37877 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00594 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99919 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 60.09647 * 9 7 2 11 11 C 1.53120 * 109.50009 * 299.99707 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 15 15 C 1.46892 * 111.00192 * 185.84212 * 14 13 12 16 16 C 1.53003 * 109.47390 * 293.95474 * 15 14 13 17 17 C 1.52994 * 109.47262 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.47145 * 179.97438 * 17 16 15 19 19 C 1.46848 * 111.19688 * 61.74516 * 14 13 12 20 20 H 0.96996 * 120.00390 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 22 22 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 23 23 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 24 24 H 1.09002 * 109.50248 * 297.64565 * 12 11 9 25 25 H 1.08997 * 109.46051 * 60.83848 * 13 12 11 26 26 H 1.09006 * 109.46001 * 180.81597 * 13 12 11 27 27 H 1.08997 * 109.47341 * 53.95882 * 15 14 13 28 28 H 1.09004 * 109.47377 * 173.95469 * 15 14 13 29 29 H 1.09001 * 109.46681 * 299.99976 * 16 15 14 30 30 H 1.08991 * 109.46656 * 59.99603 * 16 15 14 31 31 H 1.08992 * 109.47416 * 299.99876 * 17 16 15 32 32 H 1.09004 * 109.47438 * 60.00036 * 17 16 15 33 33 H 1.08999 * 109.46555 * 58.27446 * 19 14 13 34 34 H 1.08998 * 109.46337 * 178.25654 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6256 -2.5589 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9342 1.2747 13 6 0.6944 -5.0564 1.2433 14 7 1.5101 -4.9357 0.0283 15 6 2.4274 -6.0752 -0.1053 16 6 3.4548 -6.0384 1.0279 17 6 4.4099 -7.2256 0.8891 18 9 5.3497 -7.1916 1.9250 19 6 2.2438 -3.6639 0.0054 20 1 -0.4850 0.8400 -0.0004 21 1 -0.3679 -1.7788 1.2287 22 1 0.9907 -2.4808 2.1406 23 1 -0.9407 -4.0148 2.1844 24 1 -0.9975 -4.0170 0.4049 25 1 1.3366 -4.9809 2.1208 26 1 0.1876 -6.0215 1.2460 27 1 1.8616 -7.0053 -0.0527 28 1 2.9421 -6.0169 -1.0644 29 1 4.0207 -5.1083 0.9752 30 1 2.9402 -6.0967 1.9868 31 1 3.8438 -8.1555 0.9421 32 1 4.9246 -7.1677 -0.0700 33 1 2.8788 -3.5950 0.8887 34 1 2.8622 -3.6174 -0.8910 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397592486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:16 Heat of formation + Delta-G solvation = -88.162052 kcal Electronic energy + Delta-G solvation = -14930.423004 eV Core-core repulsion = 12389.796639 eV Total energy + Delta-G solvation = -2540.626365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.55724 -40.06830 -36.21461 -34.28220 -31.85510 -31.67478 -26.96799 -26.64683 -24.10617 -23.19590 -22.29549 -20.00314 -18.46398 -17.25138 -17.06486 -16.62892 -16.15415 -15.81957 -15.77381 -14.94887 -14.81277 -14.43439 -14.15019 -13.77790 -13.36055 -12.96415 -12.86926 -12.72501 -12.53422 -12.10615 -11.98439 -11.85787 -11.72465 -11.36990 -11.34872 -10.85792 -10.66577 -10.38191 -9.09892 -8.08712 -6.23163 1.40614 1.41786 1.49503 2.42017 3.13938 3.18059 3.70258 3.83577 4.04778 4.21627 4.26338 4.29427 4.32970 4.46605 4.64844 4.68223 4.73423 4.88756 4.92163 4.93393 5.07467 5.11570 5.18908 5.29058 5.40531 5.52550 5.62690 5.96414 6.12266 6.20933 6.38770 6.45604 6.89813 7.44818 8.95779 Molecular weight = 215.14amu Principal moments of inertia in cm(-1) A = 0.035015 B = 0.007547 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.467949 B = 3709.110204 C = 4245.071571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.050 3.950 10 H -0.004 1.004 11 C -0.105 4.105 12 C -0.113 4.113 13 C 0.064 3.936 14 N -0.547 5.547 15 C 0.060 3.940 16 C -0.189 4.189 17 C 0.066 3.934 18 F -0.241 7.241 19 C 0.081 3.919 20 H 0.261 0.739 21 H 0.057 0.943 22 H 0.019 0.981 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.027 0.973 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.018 0.982 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 -13.236 1.526 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.032 3.968 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.151 4.151 13 C -0.064 4.064 14 N -0.270 5.270 15 C -0.068 4.068 16 C -0.229 4.229 17 C 0.011 3.989 18 F -0.223 7.223 19 C -0.047 4.047 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.036 0.964 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.703 -13.117 1.136 13.678 hybrid contribution 0.881 1.405 0.762 1.825 sum 4.584 -11.713 1.897 12.720 Atomic orbital electron populations 1.70020 1.07170 1.27165 1.51114 1.25714 0.95663 1.02309 0.94744 0.85696 0.78469 0.79200 0.78799 1.19569 1.20787 1.19815 1.21521 0.92971 0.92335 1.50984 0.93146 1.18608 0.93085 0.91458 0.93693 0.98579 1.21467 0.99103 0.96470 0.97294 1.21606 0.97667 0.94881 1.00912 1.22062 0.94910 0.99153 0.90281 1.62156 1.24170 1.02364 1.38335 1.22210 0.92581 0.94439 0.97571 1.22814 0.99185 0.99219 1.01682 1.22108 0.88496 0.99920 0.88370 1.92720 1.68613 1.97950 1.62976 1.21969 0.95309 0.88986 0.98436 0.93019 0.92466 0.96189 0.91317 0.93018 0.95482 0.88950 0.88263 0.89934 0.92689 0.91540 0.88099 0.89025 0.96385 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.90 11.35 21.45 0.24 -53.65 16 2 C 0.01 0.82 5.30 84.66 0.45 1.27 16 3 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.49 8.57 25.60 0.22 -30.27 16 8 H 0.05 2.79 7.75 -2.91 -0.02 2.77 16 9 C 0.05 2.60 2.27 -11.48 -0.03 2.58 16 10 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 11 C -0.11 -5.12 5.02 30.68 0.15 -4.97 16 12 C -0.11 -4.33 6.10 30.65 0.19 -4.14 16 13 C 0.06 2.06 5.05 86.33 0.44 2.49 16 14 N -0.55 -18.88 4.86 -896.36 -4.36 -23.23 16 15 C 0.06 1.48 5.36 86.31 0.46 1.94 16 16 C -0.19 -4.64 4.97 30.59 0.15 -4.49 16 17 C 0.07 1.25 7.55 71.98 0.54 1.80 16 18 F -0.24 -6.21 17.36 44.97 0.78 -5.43 16 19 C 0.08 3.40 4.06 86.33 0.35 3.75 16 20 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 21 H 0.06 3.16 6.15 -2.39 -0.01 3.14 16 22 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.03 0.88 6.75 -2.39 -0.02 0.87 16 26 H 0.09 2.40 8.06 -2.38 -0.02 2.38 16 27 H 0.10 1.91 8.06 -2.39 -0.02 1.89 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.05 1.62 6.51 -2.39 -0.02 1.61 16 30 H 0.07 1.71 6.68 -2.39 -0.02 1.70 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.02 0.77 6.61 -2.39 -0.02 0.76 16 34 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 Total: -1.00 -63.09 268.66 2.68 -60.41 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.06 Total: 5.66 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 2.93 Total: -30.04 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -4.11 Total: -76.89 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.78 Total: -5.43 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -63.09 2.68 -60.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.754 kcal (2) G-P(sol) polarization free energy of solvation -63.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds