Wall clock time and date at job start Mon Mar 30 2020 17:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47232 * 299.99978 * 3 2 1 6 6 H 1.48505 * 109.47012 * 60.00037 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99938 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53326 * 299.90188 * 9 7 2 11 11 C 1.53120 * 109.50132 * 59.99803 * 9 7 2 12 12 C 1.53123 * 109.21163 * 177.62791 * 11 9 7 13 13 C 1.53037 * 109.27398 * 302.31409 * 12 11 9 14 14 N 1.46848 * 109.52381 * 59.18254 * 13 12 11 15 15 C 1.46900 * 110.99918 * 174.15634 * 14 13 12 16 16 C 1.53002 * 109.47236 * 293.95281 * 15 14 13 17 17 C 1.53008 * 109.47188 * 179.97438 * 16 15 14 18 18 F 1.39898 * 109.46930 * 179.97438 * 17 16 15 19 19 C 1.46845 * 111.19518 * 298.25146 * 14 13 12 20 20 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.52427 * 57.69065 * 11 9 7 22 22 H 1.08995 * 109.52208 * 297.56384 * 11 9 7 23 23 H 1.08996 * 109.50077 * 62.25431 * 12 11 9 24 24 H 1.08993 * 109.50100 * 182.33643 * 12 11 9 25 25 H 1.09006 * 109.45986 * 179.19524 * 13 12 11 26 26 H 1.08996 * 109.46322 * 299.16841 * 13 12 11 27 27 H 1.09004 * 109.47213 * 53.94837 * 15 14 13 28 28 H 1.08999 * 109.47347 * 173.94985 * 15 14 13 29 29 H 1.08992 * 109.47277 * 299.99745 * 16 15 14 30 30 H 1.09001 * 109.46868 * 60.00023 * 16 15 14 31 31 H 1.08992 * 109.47175 * 300.00263 * 17 16 15 32 32 H 1.09006 * 109.46196 * 60.00131 * 17 16 15 33 33 H 1.09003 * 109.45905 * 181.76430 * 19 14 13 34 34 H 1.09002 * 109.46166 * 301.73872 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6250 -2.5586 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3460 -3.9341 -1.2733 13 6 0.6931 -5.0572 -1.2416 14 7 1.5091 -4.9365 -0.0266 15 6 2.4255 -6.0768 0.1073 16 6 1.6180 -7.3559 0.3368 17 6 2.5725 -8.5437 0.4757 18 9 1.8340 -9.7132 0.6861 19 6 2.2440 -3.6654 -0.0047 20 1 -0.4851 0.8400 0.0004 21 1 0.9923 -2.4829 -2.1398 22 1 -0.3663 -1.7787 -1.2296 23 1 -0.9972 -4.0161 -0.4030 24 1 -0.9418 -4.0144 -2.1825 25 1 0.1855 -6.0218 -1.2438 26 1 1.3352 -4.9827 -2.1192 27 1 3.0152 -6.1780 -0.8038 28 1 3.0911 -5.9105 0.9543 29 1 1.0283 -7.2548 1.2478 30 1 0.9524 -7.5223 -0.5103 31 1 3.1619 -8.6447 -0.4355 32 1 3.2383 -8.3774 1.3226 33 1 2.8629 -3.6192 0.8914 34 1 2.8786 -3.5975 -0.8883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397592488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:19 Heat of formation + Delta-G solvation = -71.478980 kcal Electronic energy + Delta-G solvation = -14730.522568 eV Core-core repulsion = 12190.619635 eV Total energy + Delta-G solvation = -2539.902932 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.62829 -38.35767 -34.63089 -32.55965 -30.78641 -29.76723 -25.44660 -24.97601 -22.48910 -21.75092 -20.51592 -18.61322 -16.49335 -16.35935 -15.80514 -15.31226 -14.76999 -14.41147 -14.15439 -13.63721 -13.23493 -12.77496 -12.50709 -12.32578 -11.67033 -11.51032 -11.17429 -11.03536 -10.96524 -10.75454 -10.60516 -10.49493 -10.04492 -9.83796 -9.47422 -9.02865 -8.69723 -8.30678 -7.69387 -5.97491 -4.03809 3.29735 3.37849 3.41288 4.22981 4.46820 4.73208 4.87991 4.98543 5.11761 5.32589 5.36743 5.64711 5.71436 5.79452 5.81795 6.05741 6.09619 6.22027 6.32690 6.40452 6.50374 6.71416 6.75174 6.96085 7.21889 7.39676 7.65075 7.75151 7.80947 8.08314 8.17654 8.48024 9.00503 9.60613 11.08550 Molecular weight = 215.14amu Principal moments of inertia in cm(-1) A = 0.060575 B = 0.006072 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.127869 B = 4610.108217 C = 4915.239710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.539 5.539 15 C 0.057 3.943 16 C -0.150 4.150 17 C 0.062 3.938 18 F -0.222 7.222 19 C 0.068 3.932 20 H 0.259 0.741 21 H 0.029 0.971 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.060 0.940 26 H 0.022 0.978 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 -11.857 -1.172 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.068 4.068 14 N -0.263 5.263 15 C -0.072 4.072 16 C -0.188 4.188 17 C 0.007 3.993 18 F -0.204 7.204 19 C -0.059 4.059 20 H 0.069 0.931 21 H 0.048 0.952 22 H 0.109 0.891 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.813 -11.753 -0.766 12.109 hybrid contribution 1.003 0.896 -0.754 1.542 sum 3.815 -10.857 -1.520 11.608 Atomic orbital electron populations 1.69900 1.05855 1.26224 1.50746 1.24935 0.94821 0.98968 0.95129 0.86571 0.80109 0.83951 0.77550 1.19871 1.21096 1.21026 1.21183 0.92849 0.90663 1.50611 0.92804 1.18700 0.92633 0.90268 0.94887 0.94755 1.21658 1.00046 0.94770 0.98447 1.21676 0.97200 0.96467 1.00222 1.22093 0.95746 0.98854 0.90108 1.61971 1.24025 1.02204 1.38114 1.21924 0.94401 0.90614 1.00219 1.22192 0.98957 0.93430 1.04241 1.21977 0.93609 0.81141 1.02582 1.92749 1.79842 1.51099 1.96679 1.22338 0.96416 0.88427 0.98726 0.93101 0.95202 0.89086 0.92078 0.93534 0.92202 0.95952 0.95415 0.90900 0.89929 0.90865 0.91103 0.90796 0.92264 0.96306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 11.35 55.43 0.63 -24.74 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.08 8.57 -34.44 -0.30 -14.38 16 8 H 0.05 1.46 7.75 -52.49 -0.41 1.05 16 9 C 0.05 1.35 2.27 -91.62 -0.21 1.14 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.64 5.02 -26.61 -0.13 -2.77 16 12 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 13 C 0.06 1.05 5.29 -3.83 -0.02 1.03 16 14 N -0.54 -9.85 4.66 -234.58 -1.09 -10.94 16 15 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 16 C -0.15 -1.85 5.60 -26.73 -0.15 -2.00 16 17 C 0.06 0.64 7.55 37.16 0.28 0.93 16 18 F -0.22 -2.84 17.36 2.25 0.04 -2.80 16 19 C 0.07 1.43 4.69 -3.77 -0.02 1.41 16 20 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 21 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.92 6.22 -51.93 -0.32 0.60 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 28 H 0.07 0.98 7.98 -51.93 -0.41 0.57 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.92 6.44 -51.93 -0.33 0.59 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -28.40 271.84 -7.74 -36.14 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -5.58 Total: -3.24 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.82 Total: -14.69 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.46 Total: -35.68 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.40 -7.74 -36.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.337 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds