Wall clock time and date at job start Mon Mar 30 2020 17:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47232 * 299.99978 * 3 2 1 6 6 H 1.48505 * 109.47012 * 60.00037 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99938 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53326 * 299.90188 * 9 7 2 11 11 C 1.53120 * 109.50132 * 59.99803 * 9 7 2 12 12 C 1.53123 * 109.21163 * 177.62791 * 11 9 7 13 13 C 1.53037 * 109.27398 * 302.31409 * 12 11 9 14 14 N 1.46848 * 109.52381 * 59.18254 * 13 12 11 15 15 C 1.46900 * 110.99918 * 174.15634 * 14 13 12 16 16 C 1.53002 * 109.47236 * 293.95281 * 15 14 13 17 17 C 1.53008 * 109.47188 * 179.97438 * 16 15 14 18 18 F 1.39898 * 109.46930 * 179.97438 * 17 16 15 19 19 C 1.46845 * 111.19518 * 298.25146 * 14 13 12 20 20 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.52427 * 57.69065 * 11 9 7 22 22 H 1.08995 * 109.52208 * 297.56384 * 11 9 7 23 23 H 1.08996 * 109.50077 * 62.25431 * 12 11 9 24 24 H 1.08993 * 109.50100 * 182.33643 * 12 11 9 25 25 H 1.09006 * 109.45986 * 179.19524 * 13 12 11 26 26 H 1.08996 * 109.46322 * 299.16841 * 13 12 11 27 27 H 1.09004 * 109.47213 * 53.94837 * 15 14 13 28 28 H 1.08999 * 109.47347 * 173.94985 * 15 14 13 29 29 H 1.08992 * 109.47277 * 299.99745 * 16 15 14 30 30 H 1.09001 * 109.46868 * 60.00023 * 16 15 14 31 31 H 1.08992 * 109.47175 * 300.00263 * 17 16 15 32 32 H 1.09006 * 109.46196 * 60.00131 * 17 16 15 33 33 H 1.09003 * 109.45905 * 181.76430 * 19 14 13 34 34 H 1.09002 * 109.46166 * 301.73872 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6250 -2.5586 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3460 -3.9341 -1.2733 13 6 0.6931 -5.0572 -1.2416 14 7 1.5091 -4.9365 -0.0266 15 6 2.4255 -6.0768 0.1073 16 6 1.6180 -7.3559 0.3368 17 6 2.5725 -8.5437 0.4757 18 9 1.8340 -9.7132 0.6861 19 6 2.2440 -3.6654 -0.0047 20 1 -0.4851 0.8400 0.0004 21 1 0.9923 -2.4829 -2.1398 22 1 -0.3663 -1.7787 -1.2296 23 1 -0.9972 -4.0161 -0.4030 24 1 -0.9418 -4.0144 -2.1825 25 1 0.1855 -6.0218 -1.2438 26 1 1.3352 -4.9827 -2.1192 27 1 3.0152 -6.1780 -0.8038 28 1 3.0911 -5.9105 0.9543 29 1 1.0283 -7.2548 1.2478 30 1 0.9524 -7.5223 -0.5103 31 1 3.1619 -8.6447 -0.4355 32 1 3.2383 -8.3774 1.3226 33 1 2.8629 -3.6192 0.8914 34 1 2.8786 -3.5975 -0.8883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397592488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:19 Heat of formation + Delta-G solvation = -88.435162 kcal Electronic energy + Delta-G solvation = -14731.257843 eV Core-core repulsion = 12190.619635 eV Total energy + Delta-G solvation = -2540.638208 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.52448 -39.89487 -36.19880 -34.28953 -32.21948 -31.55556 -26.96185 -26.64188 -23.82754 -23.39773 -21.82240 -20.36895 -18.44089 -17.24295 -17.08557 -16.53464 -16.40628 -15.81641 -15.45353 -15.02293 -14.91041 -14.40194 -14.09084 -14.00942 -13.23501 -12.88457 -12.85915 -12.59848 -12.48497 -12.14939 -12.02590 -11.76442 -11.71363 -11.41059 -11.38319 -10.82349 -10.65195 -10.37708 -9.13450 -8.07943 -6.22359 1.40701 1.42416 1.53677 2.42915 3.00404 3.19225 3.80958 3.92450 4.04173 4.18415 4.24777 4.32561 4.43630 4.45145 4.61016 4.69218 4.70733 4.84352 4.89939 4.99952 5.07556 5.11407 5.19220 5.31440 5.39883 5.52540 5.63862 5.96550 6.12227 6.21364 6.37487 6.45908 6.90949 7.45881 8.97000 Molecular weight = 215.14amu Principal moments of inertia in cm(-1) A = 0.060575 B = 0.006072 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.127869 B = 4610.108217 C = 4915.239710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.050 3.950 10 H -0.005 1.005 11 C -0.105 4.105 12 C -0.112 4.112 13 C 0.064 3.936 14 N -0.553 5.553 15 C 0.058 3.942 16 C -0.142 4.142 17 C 0.064 3.936 18 F -0.236 7.236 19 C 0.082 3.918 20 H 0.260 0.740 21 H 0.023 0.977 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -13.003 -1.652 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.031 3.969 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.064 4.064 14 N -0.277 5.277 15 C -0.070 4.070 16 C -0.181 4.181 17 C 0.009 3.991 18 F -0.217 7.217 19 C -0.046 4.046 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.945 -12.920 -1.245 13.566 hybrid contribution 0.630 1.243 -0.587 1.512 sum 4.575 -11.677 -1.832 12.675 Atomic orbital electron populations 1.70046 1.07252 1.27014 1.51346 1.25733 0.95642 1.02399 0.94780 0.85551 0.79105 0.79689 0.77567 1.19053 1.20647 1.20670 1.21559 0.93031 0.92136 1.50644 0.92922 1.18637 0.93082 0.91474 0.93697 0.98646 1.21469 0.99128 0.96282 0.97423 1.21596 0.97623 0.94965 1.00828 1.22081 0.95218 0.99074 0.90000 1.61889 1.24913 1.02213 1.38722 1.21996 0.94164 0.89622 1.01223 1.22090 0.99050 0.93317 1.03607 1.22066 0.93060 0.79538 1.04483 1.92725 1.80330 1.51845 1.96844 1.21993 0.95242 0.88719 0.98606 0.93083 0.95856 0.92490 0.93255 0.91284 0.89293 0.95445 0.94030 0.90140 0.91104 0.90940 0.89008 0.89056 0.92269 0.96481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.73 11.35 21.45 0.24 -53.49 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -29.81 8.57 25.60 0.22 -29.59 16 8 H 0.05 2.87 7.75 -2.91 -0.02 2.84 16 9 C 0.05 2.56 2.27 -11.44 -0.03 2.54 16 10 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 11 C -0.10 -5.07 5.02 30.68 0.15 -4.92 16 12 C -0.11 -4.34 6.09 30.65 0.19 -4.16 16 13 C 0.06 2.11 5.29 86.33 0.46 2.56 16 14 N -0.55 -19.36 4.66 -896.08 -4.17 -23.53 16 15 C 0.06 1.49 4.96 86.30 0.43 1.91 16 16 C -0.14 -3.12 5.60 30.60 0.17 -2.95 16 17 C 0.06 1.11 7.55 71.98 0.54 1.65 16 18 F -0.24 -5.44 17.36 44.97 0.78 -4.66 16 19 C 0.08 3.43 4.69 86.37 0.41 3.83 16 20 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 21 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.09 2.46 6.22 -2.38 -0.01 2.44 16 26 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.04 0.99 8.12 -2.38 -0.02 0.97 16 28 H 0.08 1.96 7.98 -2.39 -0.02 1.94 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.60 6.44 -2.39 -0.02 1.58 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 2.43 8.01 -2.39 -0.02 2.41 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -61.76 271.84 2.92 -58.85 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.05 Total: 4.97 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 2.99 Total: -27.94 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -3.93 Total: -77.02 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.78 Total: -4.66 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -61.76 2.92 -58.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.587 kcal (2) G-P(sol) polarization free energy of solvation -61.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds