Wall clock time and date at job start Mon Mar 30 2020 17:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 110.30401 * 2 1 4 4 C 1.53713 * 110.43163 * 122.22884 * 2 1 3 5 5 C 1.52943 * 112.48929 * 116.09171 * 4 2 1 6 6 H 1.09002 * 109.45649 * 270.26469 * 5 4 2 7 7 N 1.46898 * 109.60103 * 150.03277 * 5 4 2 8 8 C 1.46906 * 110.99892 * 154.01432 * 7 5 4 9 9 C 1.52993 * 109.47385 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47432 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99822 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00126 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99707 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99956 * 0.27447 * 12 10 9 15 15 H 1.48503 * 109.47407 * 269.72718 * 14 12 10 16 16 H 1.48505 * 109.47281 * 29.72474 * 14 12 10 17 17 H 1.48501 * 109.47274 * 149.72572 * 14 12 10 18 18 C 1.55158 * 108.95868 * 30.10302 * 5 4 2 19 19 S 1.83399 * 110.34251 * 237.82933 * 2 1 3 20 20 H 1.08997 * 109.47092 * 180.71603 * 1 2 3 21 21 H 1.08996 * 109.47270 * 300.71479 * 1 2 3 22 22 H 1.08997 * 109.47225 * 60.71963 * 1 2 3 23 23 H 1.09004 * 108.88552 * 355.30702 * 4 2 1 24 24 H 1.08998 * 108.88732 * 236.88618 * 4 2 1 25 25 H 1.00893 * 111.00387 * 30.06071 * 7 5 4 26 26 H 1.08996 * 109.47529 * 59.99563 * 8 7 5 27 27 H 1.09000 * 109.46693 * 299.99896 * 8 7 5 28 28 H 1.08996 * 109.47340 * 59.99207 * 9 8 7 29 29 H 1.09004 * 109.46672 * 299.99969 * 9 8 7 30 30 H 0.97005 * 119.99656 * 179.97438 * 13 12 10 31 31 H 1.08999 * 111.13036 * 76.47033 * 18 5 4 32 32 H 1.09005 * 111.12947 * 200.64509 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0665 -0.7682 1.2185 5 6 2.8532 -2.0184 0.8219 6 1 2.1742 -2.8685 0.7547 7 7 3.8860 -2.2912 1.8302 8 6 4.2320 -3.7187 1.8565 9 6 5.3076 -3.9634 2.9167 10 6 5.6620 -5.4278 2.9441 11 1 5.1690 -6.1154 2.2729 12 6 6.6157 -5.8899 3.8263 13 7 6.9253 -7.1679 3.8498 14 14 7.4628 -4.7020 4.9926 15 1 8.6870 -4.1631 4.3474 16 1 6.5408 -3.5837 5.3162 17 1 7.8343 -5.4145 6.2414 18 6 3.5225 -1.7766 -0.5568 19 16 2.1675 -0.9156 -1.4556 20 1 -0.3633 -1.0276 0.0128 21 1 -0.3633 0.5249 0.8835 22 1 -0.3633 0.5026 -0.8963 23 1 1.2265 -1.0645 1.8467 24 1 2.7177 -0.1089 1.7925 25 1 3.5942 -1.9731 2.7421 26 1 4.6095 -4.0193 0.8792 27 1 3.3443 -4.3032 2.0985 28 1 4.9296 -3.6630 3.8939 29 1 6.1953 -3.3788 2.6751 30 1 7.5965 -7.4929 4.4702 31 1 4.3994 -1.1362 -0.4610 32 1 3.7778 -2.7195 -1.0405 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397802289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:26 Heat of formation + Delta-G solvation = -17.142676 kcal Electronic energy + Delta-G solvation = -12342.212895 eV Core-core repulsion = 10235.046244 eV Total energy + Delta-G solvation = -2107.166652 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.79655 -34.71305 -32.87651 -31.15303 -28.64313 -26.79984 -24.28560 -22.39052 -20.58520 -20.01051 -16.97339 -16.70889 -15.70232 -14.99463 -14.53410 -14.18908 -14.04809 -13.42117 -13.24497 -13.00459 -12.58074 -12.37033 -11.66014 -11.47868 -11.38075 -11.19120 -11.13186 -10.84575 -10.25464 -10.02404 -9.83219 -9.69635 -9.26460 -8.56617 -8.13421 -7.76164 -6.07112 -4.05956 1.79837 2.29347 3.30572 3.37597 3.41407 4.30903 4.43451 4.46584 4.66224 4.77330 5.10205 5.15203 5.27363 5.28157 5.42337 5.53079 5.64815 5.68403 5.85623 5.89778 5.97546 6.09800 6.23348 6.70475 7.03743 7.31630 7.48628 7.64625 7.81978 8.49643 8.96691 9.54931 11.06199 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.062816 B = 0.005528 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.641152 B = 5064.272713 C = 5227.801264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 H 0.095 0.905 4 C -0.132 4.132 5 C 0.083 3.917 6 H 0.058 0.942 7 N -0.685 5.685 8 C 0.072 3.928 9 C -0.010 4.010 10 C -0.523 4.523 11 H 0.071 0.929 12 C 0.068 3.932 13 N -0.903 5.903 14 Si 0.883 3.117 15 H -0.276 1.276 16 H -0.266 1.266 17 H -0.289 1.289 18 C -0.048 4.048 19 S -0.310 6.310 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.339 0.661 26 H 0.066 0.934 27 H 0.025 0.975 28 H 0.013 0.987 29 H 0.021 0.979 30 H 0.263 0.737 31 H 0.099 0.901 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.831 14.555 -5.519 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 H 0.113 0.887 4 C -0.171 4.171 5 C -0.029 4.029 6 H 0.076 0.924 7 N -0.317 5.317 8 C -0.056 4.056 9 C -0.047 4.047 10 C -0.561 4.561 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.542 5.542 14 Si 0.710 3.290 15 H -0.202 1.202 16 H -0.190 1.190 17 H -0.215 1.215 18 C -0.197 4.197 19 S -0.084 6.084 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.158 0.842 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.549 14.556 -7.005 19.293 hybrid contribution 0.182 0.089 2.204 2.213 sum -10.366 14.645 -4.801 18.574 Atomic orbital electron populations 1.21824 0.92278 1.03076 1.02144 1.23523 0.98922 1.00749 0.93096 0.88678 1.22247 1.00441 0.96902 0.97519 1.22375 0.91685 0.96837 0.91980 0.92425 1.60701 1.41144 1.20653 1.09242 1.22049 0.98217 0.84163 1.01160 1.19545 0.94175 0.97531 0.93489 1.21056 1.22270 0.91735 1.21084 0.91098 1.25009 0.96383 0.95024 0.96963 1.69917 1.32824 1.13584 1.37853 0.86730 0.80241 0.81429 0.80562 1.20212 1.19040 1.21465 1.24415 0.97347 1.02598 0.95318 1.87780 1.41477 1.58904 1.20255 0.91467 0.91516 0.92039 0.90384 0.89994 0.84248 0.91597 0.95706 0.96847 0.96046 0.92682 0.88266 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.05 37.15 0.34 -0.82 16 2 C -0.03 -0.35 3.91 -26.36 -0.10 -0.45 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -1.42 5.42 -26.39 -0.14 -1.56 16 5 C 0.08 1.12 2.86 -66.60 -0.19 0.93 16 6 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 7 N -0.69 -10.84 6.26 -105.55 -0.66 -11.50 16 8 C 0.07 1.41 5.43 -3.82 -0.02 1.39 16 9 C -0.01 -0.23 4.30 -27.89 -0.12 -0.35 16 10 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 11 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 14 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 C -0.05 -0.65 7.03 38.30 0.27 -0.38 16 19 S -0.31 -3.98 22.66 -107.50 -2.44 -6.42 16 20 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.76 7.63 -51.93 -0.40 0.36 16 24 H 0.08 0.86 7.93 -51.93 -0.41 0.44 16 25 H 0.34 4.99 8.29 -39.30 -0.33 4.67 16 26 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 27 H 0.02 0.49 8.06 -51.93 -0.42 0.07 16 28 H 0.01 0.31 7.19 -51.93 -0.37 -0.06 16 29 H 0.02 0.51 7.58 -51.93 -0.39 0.12 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 271.95 15.07 4.10 4.10 Total: -1.00 -30.03 271.95 -8.56 -38.59 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.27 Total: -0.20 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -0.40 Total: -14.55 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.11 Total: -38.57 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -2.44 Total: -6.42 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.03 -8.56 -38.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397802289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.447 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds