Wall clock time and date at job start Mon Mar 30 2020 17:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.30025 * 2 1 4 4 C 1.53704 * 110.34214 * 237.83092 * 2 1 3 5 5 C 1.52945 * 112.37947 * 243.91654 * 4 2 1 6 6 H 1.09003 * 109.60403 * 89.76143 * 5 4 2 7 7 N 1.46905 * 109.60152 * 209.89978 * 5 4 2 8 8 C 1.46900 * 110.99764 * 205.00208 * 7 5 4 9 9 C 1.52991 * 109.47104 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.47322 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99646 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00080 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99958 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00138 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47112 * 89.99989 * 14 12 10 16 16 H 1.48494 * 109.47184 * 209.99954 * 14 12 10 17 17 H 1.48504 * 109.47119 * 330.00174 * 14 12 10 18 18 C 1.54999 * 109.04100 * 329.71741 * 5 4 2 19 19 S 1.83399 * 110.43072 * 122.23139 * 2 1 3 20 20 H 1.09000 * 109.46759 * 182.17307 * 1 2 3 21 21 H 1.09003 * 109.47032 * 302.16801 * 1 2 3 22 22 H 1.08993 * 109.47297 * 62.17217 * 1 2 3 23 23 H 1.09002 * 108.88799 * 4.63991 * 4 2 1 24 24 H 1.08999 * 108.88946 * 123.19485 * 4 2 1 25 25 H 1.00905 * 110.99730 * 328.95042 * 7 5 4 26 26 H 1.09004 * 109.47038 * 300.00134 * 8 7 5 27 27 H 1.09001 * 109.47171 * 59.99597 * 8 7 5 28 28 H 1.09004 * 109.47305 * 299.99998 * 9 8 7 29 29 H 1.09001 * 109.47413 * 59.99773 * 9 8 7 30 30 H 0.96998 * 120.00258 * 179.97438 * 13 12 10 31 31 H 1.08999 * 111.23002 * 283.69843 * 18 5 4 32 32 H 1.09001 * 111.14425 * 159.48358 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0643 -0.7673 -1.2199 5 6 2.8498 -2.0181 -0.8229 6 1 2.1722 -2.8692 -0.7548 7 7 3.8812 -2.2935 -1.8321 8 6 4.2419 -3.7175 -1.8411 9 6 5.3155 -3.9648 -2.9027 10 6 5.6860 -5.4255 -2.9116 11 1 5.2043 -6.1090 -2.2281 12 6 6.6401 -5.8894 -3.7924 13 7 6.9638 -7.1641 -3.7998 14 14 7.4728 -4.7074 -4.9751 15 1 8.6913 -4.1463 -4.3382 16 1 7.8512 -5.4321 -6.2147 17 1 6.5378 -3.6041 -5.3125 18 6 3.5236 -1.7769 0.5520 19 16 2.1702 -0.9166 1.4538 20 1 -0.3633 -1.0269 0.0390 21 1 -0.3633 0.5472 0.8699 22 1 -0.3633 0.4797 -0.9087 23 1 1.2231 -1.0631 -1.8469 24 1 2.7164 -0.1085 -1.7933 25 1 3.5819 -1.9904 -2.7468 26 1 4.6269 -4.0010 -0.8615 27 1 3.3594 -4.3144 -2.0713 28 1 4.9301 -3.6814 -3.8822 29 1 6.1980 -3.3678 -2.6730 30 1 7.6347 -7.4905 -4.4196 31 1 4.4003 -1.1365 0.4550 32 1 3.7803 -2.7198 1.0349 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397802290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:28 Heat of formation + Delta-G solvation = -36.660137 kcal Electronic energy + Delta-G solvation = -12345.280970 eV Core-core repulsion = 10237.267977 eV Total energy + Delta-G solvation = -2108.012993 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.95190 -36.09368 -34.67280 -32.64588 -30.19183 -27.74356 -25.97983 -23.45563 -22.28115 -21.11419 -18.97826 -17.90549 -16.78415 -16.36192 -16.24892 -15.41309 -15.09186 -14.95253 -14.57242 -14.31650 -14.04281 -13.46694 -13.21492 -12.93890 -12.53374 -12.32772 -12.25557 -12.07679 -11.79784 -11.65163 -11.56271 -11.41601 -10.88650 -10.77272 -9.46384 -8.77526 -8.30271 -6.35440 0.84185 1.32955 1.38368 1.39302 1.51719 2.36720 3.05590 3.15607 3.53731 3.80362 3.86548 4.12779 4.16283 4.41277 4.43286 4.50475 4.56765 4.72494 4.78481 4.87824 4.93948 4.98996 5.04033 5.26233 5.29670 5.47441 5.62099 6.03423 6.23570 6.46434 6.73338 7.29739 8.86547 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.062857 B = 0.005535 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.348522 B = 5057.189049 C = 5225.316358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.023 4.023 3 H 0.109 0.891 4 C -0.126 4.126 5 C 0.085 3.915 6 H 0.048 0.952 7 N -0.681 5.681 8 C 0.086 3.914 9 C -0.004 4.004 10 C -0.536 4.536 11 H 0.030 0.970 12 C 0.005 3.995 13 N -0.952 5.952 14 Si 0.956 3.044 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.244 1.244 18 C -0.046 4.046 19 S -0.341 6.341 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.349 0.651 26 H 0.054 0.946 27 H 0.018 0.982 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.267 0.733 31 H 0.097 0.903 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 17.200 4.307 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 H 0.127 0.873 4 C -0.165 4.165 5 C -0.027 4.027 6 H 0.066 0.934 7 N -0.313 5.313 8 C -0.043 4.043 9 C -0.042 4.042 10 C -0.574 4.574 11 H 0.048 0.952 12 C -0.192 4.192 13 N -0.593 5.593 14 Si 0.779 3.221 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.167 1.167 18 C -0.195 4.195 19 S -0.116 6.116 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.108 0.892 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.169 0.831 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.313 17.233 5.807 21.417 hybrid contribution 0.315 -0.801 -1.786 1.982 sum -10.998 16.432 4.021 20.177 Atomic orbital electron populations 1.21838 0.90826 1.03003 1.03432 1.23665 0.99977 1.00681 0.90840 0.87316 1.22186 1.00769 0.95600 0.97900 1.22404 0.91130 0.98071 0.91131 0.93371 1.60581 1.42209 1.18424 1.10119 1.21688 0.96751 0.86588 0.99234 1.19432 0.95418 0.94099 0.95223 1.21419 1.22097 0.94230 1.19693 0.95173 1.26025 0.97139 0.96869 0.99165 1.70072 1.33759 1.16135 1.39292 0.85574 0.79367 0.79269 0.77877 1.19358 1.21056 1.16690 1.24296 0.97585 1.02185 0.95467 1.87916 1.41553 1.59554 1.22547 0.92186 0.91802 0.89181 0.88753 0.89007 0.83116 0.92709 0.96333 0.95882 0.95882 0.92432 0.88460 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.05 71.98 0.65 -1.21 16 2 C -0.02 -0.41 3.91 30.83 0.12 -0.28 16 3 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.13 -2.31 5.43 30.81 0.17 -2.14 16 5 C 0.08 2.13 2.86 45.58 0.13 2.26 16 6 H 0.05 1.32 7.79 -2.39 -0.02 1.31 16 7 N -0.68 -20.22 6.25 -488.13 -3.05 -23.27 16 8 C 0.09 3.33 5.43 86.30 0.47 3.80 16 9 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 10 C -0.54 -30.98 9.66 25.60 0.25 -30.73 16 11 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 12 C 0.00 0.28 5.47 84.65 0.46 0.75 16 13 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 14 Si 0.96 44.11 27.47 68.60 1.88 46.00 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 18 C -0.05 -1.22 6.97 72.67 0.51 -0.71 16 19 S -0.34 -8.39 22.66 -56.49 -1.28 -9.67 16 20 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 23 H 0.09 1.47 7.62 -2.39 -0.02 1.45 16 24 H 0.09 1.57 7.95 -2.39 -0.02 1.55 16 25 H 0.35 9.26 8.31 -89.69 -0.75 8.51 16 26 H 0.05 2.21 8.04 -2.38 -0.02 2.20 16 27 H 0.02 0.73 8.05 -2.39 -0.02 0.71 16 28 H 0.02 1.02 7.20 -2.38 -0.02 1.00 16 29 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 30 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -65.09 271.86 1.01 -64.08 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.28 Total: 10.86 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 2.88 Total: -28.32 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.75 Total: -82.94 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.28 Total: -9.67 kcal Total: -65.09 1.01 -64.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397802290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.415 kcal (2) G-P(sol) polarization free energy of solvation -65.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds