Wall clock time and date at job start Mon Mar 30 2020 17:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47148 * 2 1 4 4 C 1.42903 * 113.99930 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47024 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.55500 * 54.86811 * 5 4 3 7 7 C 1.53295 * 109.51129 * 175.00071 * 5 4 3 8 8 N 1.47158 * 108.38371 * 172.22330 * 7 5 4 9 9 C 1.36937 * 120.98099 * 129.43713 * 8 7 5 10 10 H 1.08001 * 120.00143 * 333.93905 * 9 8 7 11 11 C 1.38808 * 119.99489 * 154.20973 * 9 8 7 12 12 N 1.31625 * 119.99689 * 159.34465 * 11 9 8 13 13 Si 1.86797 * 120.00343 * 339.33828 * 11 9 8 14 14 H 1.48501 * 109.47277 * 91.90185 * 13 11 9 15 15 H 1.48507 * 109.47150 * 211.90277 * 13 11 9 16 16 H 1.48499 * 109.47111 * 331.89926 * 13 11 9 17 17 C 1.47152 * 118.03607 * 309.71973 * 8 7 5 18 18 C 1.52873 * 108.61001 * 50.22076 * 17 8 7 19 19 O 1.42960 * 109.50992 * 294.74476 * 5 4 3 20 20 H 1.09003 * 109.47101 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46891 * 299.99786 * 1 2 3 22 22 H 1.08993 * 109.47321 * 60.00084 * 1 2 3 23 23 H 1.09002 * 109.47246 * 239.99342 * 2 1 3 24 24 H 1.09002 * 109.47216 * 119.99714 * 2 1 3 25 25 H 1.08997 * 109.47319 * 59.99982 * 4 3 2 26 26 H 1.08997 * 109.47060 * 299.99589 * 4 3 2 27 27 H 1.08996 * 109.68606 * 52.50404 * 7 5 4 28 28 H 1.08993 * 109.71044 * 291.96168 * 7 5 4 29 29 H 0.97000 * 119.99602 * 180.02562 * 12 11 9 30 30 H 1.08995 * 109.68428 * 170.00563 * 17 8 7 31 31 H 1.09001 * 109.67651 * 290.55476 * 17 8 7 32 32 H 1.09008 * 109.58505 * 187.92382 * 18 17 8 33 33 H 1.08999 * 109.41025 * 67.84659 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 1 3.3487 3.4435 0.8389 7 6 5.3482 3.0619 0.1241 8 7 5.7165 4.4738 -0.0668 9 6 6.5267 5.1183 0.8295 10 1 6.5691 4.7850 1.8559 11 6 7.2891 6.2036 0.4200 12 7 7.7390 7.0644 1.3084 13 14 7.6769 6.4424 -1.3916 14 1 6.6393 7.3061 -2.0103 15 1 9.0068 7.0883 -1.5322 16 1 7.6931 5.1229 -2.0725 17 6 5.1834 5.1743 -1.2460 18 6 3.6730 4.9462 -1.3074 19 8 3.4030 3.5447 -1.2250 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8333 0.9767 -0.8908 26 1 3.8340 0.9765 0.8892 27 1 5.8302 2.4505 -0.6387 28 1 5.6637 2.7308 1.1135 29 1 8.2715 7.8230 1.0223 30 1 5.3893 6.2414 -1.1633 31 1 5.6486 4.7791 -2.1491 32 1 3.2823 5.3377 -2.2468 33 1 3.1950 5.4588 -0.4726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528722884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:46 Heat of formation + Delta-G solvation = -89.600315 kcal Electronic energy + Delta-G solvation = -15031.690176 eV Core-core repulsion = 12478.628654 eV Total energy + Delta-G solvation = -2553.061522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43276 -38.70137 -36.44211 -33.79656 -33.45177 -31.70270 -29.35583 -27.21714 -24.85973 -23.62643 -23.53146 -21.61633 -18.98800 -17.87270 -17.64310 -17.38349 -16.50496 -16.22899 -15.91084 -15.78808 -15.30803 -14.73106 -14.21306 -14.14922 -13.67650 -13.47491 -13.26433 -12.82582 -12.47767 -12.31746 -12.23787 -12.08932 -11.93732 -11.57283 -11.36821 -11.15303 -10.53946 -10.51512 -9.01538 -8.21676 -5.55733 1.27183 1.39546 1.48868 2.37326 2.61965 2.72850 3.03135 3.24705 4.01508 4.05128 4.13723 4.20491 4.23330 4.32048 4.42757 4.46698 4.51440 4.54354 4.60393 4.69534 4.84200 4.85788 4.92818 5.06816 5.11477 5.29597 5.74531 6.05459 6.20037 6.32626 6.78194 7.50885 7.91760 8.97604 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.063091 B = 0.007085 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.697446 B = 3951.240796 C = 4139.910756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.409 6.409 4 C 0.081 3.919 5 C 0.080 3.920 6 H 0.049 0.951 7 C 0.122 3.878 8 N -0.624 5.624 9 C -0.256 4.256 10 H 0.057 0.943 11 C -0.031 4.031 12 N -0.953 5.953 13 Si 0.947 3.053 14 H -0.269 1.269 15 H -0.307 1.307 16 H -0.265 1.265 17 C 0.083 3.917 18 C 0.055 3.945 19 O -0.385 6.385 20 H 0.094 0.906 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.264 0.736 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.120 0.880 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 -12.910 -5.409 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.329 6.329 4 C 0.004 3.996 5 C 0.021 3.979 6 H 0.067 0.933 7 C -0.003 4.003 8 N -0.349 5.349 9 C -0.385 4.385 10 H 0.075 0.925 11 C -0.226 4.226 12 N -0.599 5.599 13 Si 0.776 3.224 14 H -0.195 1.195 15 H -0.236 1.236 16 H -0.190 1.190 17 C -0.042 4.042 18 C -0.022 4.022 19 O -0.304 6.304 20 H 0.112 0.888 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.560 -12.738 -5.515 18.064 hybrid contribution 0.935 0.592 -0.239 1.132 sum -10.625 -12.146 -5.754 17.133 Atomic orbital electron populations 1.21758 0.92966 1.03385 1.02467 1.22705 0.96400 0.82761 1.01033 1.87918 1.21109 1.28281 1.95618 1.22410 0.81601 0.93465 1.02143 1.22576 0.94561 0.93635 0.87141 0.93290 1.21639 0.92825 0.84736 1.01140 1.44463 1.55934 1.08028 1.26515 1.18866 1.18044 1.11115 0.90493 0.92479 1.25846 0.98255 0.97058 1.01449 1.69959 1.40234 1.14028 1.35664 0.85923 0.76372 0.78194 0.81922 1.19521 1.23565 1.19014 1.22052 0.95077 0.97296 0.89788 1.22949 0.94522 0.82022 1.02755 1.87853 1.81968 1.22398 1.38136 0.88754 0.92503 0.92673 0.92563 0.92133 0.91693 0.89684 0.93699 0.90516 0.92704 0.91624 0.94223 0.86190 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 0.95 6.66 71.98 0.48 1.43 16 3 O -0.41 -11.85 10.31 -144.70 -1.49 -13.35 16 4 C 0.08 2.23 5.60 71.98 0.40 2.64 16 5 C 0.08 2.84 3.06 30.69 0.09 2.93 16 6 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 7 C 0.12 4.80 6.03 86.35 0.52 5.32 16 8 N -0.62 -30.21 2.84 -698.36 -1.98 -32.19 16 9 C -0.26 -14.67 10.09 84.03 0.85 -13.82 16 10 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 11 C -0.03 -1.80 5.24 84.86 0.45 -1.36 16 12 N -0.95 -59.77 13.97 21.65 0.30 -59.46 16 13 Si 0.95 46.46 24.30 68.60 1.67 48.13 16 14 H -0.27 -12.27 6.58 99.48 0.65 -11.62 16 15 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 16 H -0.27 -12.65 6.60 99.48 0.66 -11.99 16 17 C 0.08 3.61 4.36 86.21 0.38 3.99 16 18 C 0.06 2.04 6.97 71.94 0.50 2.54 16 19 O -0.38 -14.48 10.35 -144.70 -1.50 -15.98 16 20 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 2.91 7.96 -2.39 -0.02 2.89 16 29 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.07 3.06 4.63 -2.39 -0.01 3.05 16 31 H 0.04 1.70 6.91 -2.39 -0.02 1.68 16 32 H 0.12 3.58 8.14 -2.38 -0.02 3.56 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -68.05 265.77 2.37 -65.69 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 0.96 Total: 5.29 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 4.41 Total: 1.87 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -1.68 Total: -91.66 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -2.99 Total: -29.33 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -68.05 2.37 -65.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528722884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.915 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds