Wall clock time and date at job start Mon Mar 30 2020 17:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00491 * 2 1 4 4 H 1.48500 * 109.47011 * 274.66723 * 3 2 1 5 5 H 1.48506 * 109.46501 * 34.66152 * 3 2 1 6 6 H 1.48495 * 109.47019 * 154.66050 * 3 2 1 7 7 C 1.38898 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00279 * 159.72731 * 7 2 1 9 9 N 1.37421 * 119.99814 * 339.73156 * 7 2 1 10 10 C 1.34521 * 124.45230 * 325.77435 * 9 7 2 11 11 O 1.21443 * 125.70921 * 0.02859 * 10 9 7 12 12 C 1.47781 * 108.58170 * 180.02562 * 10 9 7 13 13 C 1.38560 * 134.30974 * 179.97438 * 12 10 9 14 14 C 1.38636 * 119.71683 * 180.28280 * 13 12 10 15 15 C 1.38239 * 120.46333 * 359.40279 * 14 13 12 16 16 C 1.38633 * 120.46859 * 0.62375 * 15 14 13 17 17 C 1.38561 * 119.72136 * 359.67711 * 16 15 14 18 18 C 1.34527 * 124.45235 * 145.80568 * 9 7 2 19 19 O 1.21446 * 125.70299 * 359.97438 * 18 9 7 20 20 H 0.97001 * 119.99833 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.14348 * 0.02562 * 13 12 10 22 22 H 1.07994 * 119.76887 * 179.70347 * 14 13 12 23 23 H 1.08000 * 119.76835 * 180.29849 * 15 14 13 24 24 H 1.08005 * 120.14071 * 179.65932 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3970 2.1033 -1.3954 5 1 1.4983 2.6222 0.7963 6 1 3.5914 1.4135 0.5992 7 6 2.0085 -1.2029 -0.0005 8 1 3.0383 -1.2318 -0.3246 9 7 1.3851 -2.3563 0.4112 10 6 0.4574 -2.4145 1.3836 11 8 0.0441 -1.4706 2.0264 12 6 0.0252 -3.8191 1.5388 13 6 -0.8814 -4.4676 2.3619 14 6 -1.0498 -5.8394 2.2526 15 6 -0.3287 -6.5619 1.3204 16 6 0.5823 -5.9270 0.4904 17 6 0.7658 -4.5573 0.5922 18 6 1.6228 -3.5758 -0.1047 19 8 2.4098 -3.8276 -0.9947 20 1 -0.4850 0.8401 0.0004 21 1 -1.4514 -3.9075 3.0883 22 1 -1.7526 -6.3463 2.8970 23 1 -0.4723 -7.6294 1.2416 24 1 1.1468 -6.4975 -0.2323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000097021.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:10:01 Heat of formation + Delta-G solvation = -12.247601 kcal Electronic energy + Delta-G solvation = -13953.071371 eV Core-core repulsion = 11411.695367 eV Total energy + Delta-G solvation = -2541.376004 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.09883 -37.74674 -37.13420 -34.48245 -32.83674 -30.65564 -30.42812 -25.85471 -24.05142 -22.62257 -21.15815 -19.57243 -17.50482 -16.77644 -15.97991 -15.48889 -14.89705 -14.50222 -14.20893 -13.83437 -13.43533 -13.36266 -12.58416 -12.30312 -11.88755 -11.75670 -11.20590 -11.04990 -10.90580 -10.43627 -9.56833 -9.24231 -8.95298 -8.79143 -8.71964 -8.05778 -6.51339 -4.26882 0.82615 1.43579 2.84459 3.16967 3.23553 3.29145 3.86592 4.16955 4.34553 4.41081 4.50914 5.06481 5.10006 5.13453 5.47156 5.54671 5.69638 5.82541 6.17037 6.50826 6.52370 6.54445 7.00743 7.34691 7.75820 7.89250 8.58646 8.68451 9.06749 9.60659 10.58137 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.048770 B = 0.010356 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.985247 B = 2703.114980 C = 3162.425394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.061 3.939 3 Si 0.932 3.068 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.364 4.364 8 H 0.106 0.894 9 N -0.399 5.399 10 C 0.538 3.462 11 O -0.449 6.449 12 C -0.121 4.121 13 C -0.067 4.067 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.064 4.064 17 C -0.132 4.132 18 C 0.531 3.469 19 O -0.505 6.505 20 H 0.275 0.725 21 H 0.133 0.867 22 H 0.130 0.870 23 H 0.130 0.870 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -9.120 3.965 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.151 4.151 3 Si 0.756 3.244 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.124 0.876 9 N -0.126 5.126 10 C 0.326 3.674 11 O -0.321 6.321 12 C -0.125 4.125 13 C -0.086 4.086 14 C -0.129 4.129 15 C -0.134 4.134 16 C -0.083 4.083 17 C -0.136 4.136 18 C 0.321 3.679 19 O -0.382 6.382 20 H 0.085 0.915 21 H 0.151 0.849 22 H 0.148 0.852 23 H 0.148 0.852 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.303 -8.505 3.831 9.608 hybrid contribution 0.160 0.740 -0.079 0.761 sum -2.144 -7.766 3.752 8.887 Atomic orbital electron populations 1.69921 1.06686 1.28856 1.40131 1.25403 0.95184 1.00339 0.94221 0.85876 0.79749 0.80388 0.78347 1.20066 1.20347 1.18898 1.19413 0.97067 0.82692 1.49652 0.87610 1.42008 1.34639 1.07607 1.28321 1.18126 0.81714 0.86821 0.80753 1.90610 1.54722 1.41784 1.44990 1.21242 0.97736 0.96148 0.97379 1.20701 0.96017 0.93934 0.97908 1.21257 0.99529 0.93544 0.98542 1.21235 0.96404 0.99961 0.95785 1.20694 0.97162 0.92044 0.98371 1.21116 0.99151 0.94800 0.98499 1.18525 0.83235 0.83826 0.82279 1.90607 1.36119 1.82632 1.28885 0.91451 0.84942 0.85207 0.85211 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.99 11.32 55.49 0.63 -23.36 14 2 C 0.06 1.69 4.77 -17.49 -0.08 1.61 14 3 Si 0.93 21.19 29.60 -169.99 -5.03 16.15 14 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 14 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 14 6 H -0.26 -5.87 7.11 56.52 0.40 -5.47 14 7 C -0.36 -10.43 9.55 -14.80 -0.14 -10.57 14 8 H 0.11 2.96 7.91 -52.49 -0.42 2.54 14 9 N -0.40 -10.95 2.70 -62.76 -0.17 -11.12 14 10 C 0.54 14.08 7.31 -12.47 -0.09 13.99 14 11 O -0.45 -12.78 15.41 5.42 0.08 -12.69 14 12 C -0.12 -2.55 6.41 -104.81 -0.67 -3.22 14 13 C -0.07 -1.09 10.09 -39.32 -0.40 -1.49 14 14 C -0.11 -1.41 10.04 -39.43 -0.40 -1.81 14 15 C -0.12 -1.46 10.04 -39.44 -0.40 -1.85 14 16 C -0.06 -1.01 10.09 -39.32 -0.40 -1.41 14 17 C -0.13 -2.72 6.41 -104.82 -0.67 -3.40 14 18 C 0.53 13.40 7.96 -12.47 -0.10 13.30 14 19 O -0.50 -13.48 17.76 5.41 0.10 -13.38 14 20 H 0.28 7.48 8.31 -40.82 -0.34 7.14 14 21 H 0.13 1.95 8.06 -52.49 -0.42 1.53 14 22 H 0.13 1.18 8.06 -52.49 -0.42 0.75 14 23 H 0.13 1.15 8.06 -52.49 -0.42 0.73 14 24 H 0.13 1.84 8.06 -52.48 -0.42 1.41 14 LS Contribution 229.22 15.07 3.45 3.45 Total: -1.00 -33.13 229.22 -5.52 -38.65 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -1.24 Total: -2.87 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.34 Total: 5.17 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.46 Total: -34.48 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.18 Total: -26.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -33.13 -5.52 -38.65 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000097021.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.401 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds