Wall clock time and date at job start Mon Mar 30 2020 17:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 H 1.09000 * 109.47486 * 305.00460 * 3 2 1 5 5 C 1.50697 * 109.46961 * 185.00027 * 3 2 1 6 6 H 1.07998 * 120.00039 * 239.99932 * 5 3 2 7 7 C 1.37881 * 120.00021 * 60.00943 * 5 3 2 8 8 N 1.31512 * 119.99560 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00032 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47600 * 59.99268 * 9 7 5 11 11 H 1.48496 * 109.47117 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47088 * 299.99439 * 9 7 5 13 13 N 1.46906 * 109.46897 * 65.00435 * 3 2 1 14 14 C 1.47475 * 110.99695 * 275.97180 * 13 3 2 15 15 C 1.53521 * 87.93048 * 221.29471 * 14 13 3 16 16 F 1.39897 * 114.16650 * 272.37512 * 15 14 13 17 17 C 1.53001 * 114.34092 * 139.68275 * 15 14 13 18 18 O 1.42905 * 109.46860 * 86.08019 * 17 15 14 19 19 C 1.47472 * 111.00187 * 179.97438 * 13 3 2 20 20 H 1.09001 * 109.46743 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47048 * 299.99452 * 1 2 3 22 22 H 1.08994 * 109.47199 * 59.99565 * 1 2 3 23 23 H 1.09000 * 109.47048 * 240.00548 * 2 1 3 24 24 H 1.08994 * 109.47199 * 120.00435 * 2 1 3 25 25 H 0.97002 * 119.99397 * 179.97438 * 8 7 5 26 26 H 1.09003 * 113.47854 * 336.05764 * 14 13 3 27 27 H 1.08998 * 113.48126 * 106.52852 * 14 13 3 28 28 H 1.08997 * 109.46834 * 206.07134 * 17 15 14 29 29 H 1.08999 * 109.47364 * 326.07933 * 17 15 14 30 30 H 0.96695 * 113.99483 * 179.97438 * 18 17 15 31 31 H 1.08998 * 113.48140 * 253.47102 * 19 13 3 32 32 H 1.09007 * 113.47537 * 23.93571 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3369 -2.1730 9 14 6.0049 0.8801 -1.3813 10 1 6.5967 0.1452 -0.2345 11 1 6.3978 0.2159 -2.6500 12 1 6.5005 2.2800 -1.3808 13 7 1.6514 2.0992 1.2553 14 6 0.2775 2.6285 1.1715 15 6 0.7749 3.8814 1.9062 16 9 0.7308 3.7829 3.3010 17 6 0.1976 5.1949 1.3747 18 8 -1.0549 5.4567 2.0110 19 6 2.1276 3.4945 1.2914 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8292 -0.0608 -2.9500 26 1 -0.0506 2.8252 0.1508 27 1 -0.4469 2.0487 1.7435 28 1 0.8905 6.0088 1.5879 29 1 0.0487 5.1170 0.2978 30 1 -1.4791 6.2761 1.7219 31 1 2.9708 3.6483 1.9647 32 1 2.2935 3.9223 0.3026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:23 Heat of formation + Delta-G solvation = -63.114028 kcal Electronic energy + Delta-G solvation = -15469.891718 eV Core-core repulsion = 12767.206944 eV Total energy + Delta-G solvation = -2702.684774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.13516 -39.20355 -36.56836 -33.98745 -31.60606 -29.21878 -27.19232 -25.22908 -24.05984 -22.20861 -19.51653 -19.29695 -17.37150 -16.54235 -15.95272 -15.64393 -14.86919 -14.45504 -14.16288 -13.62688 -13.23387 -13.15888 -12.66600 -12.44125 -11.94790 -11.71320 -11.44963 -11.24808 -10.91070 -10.76556 -10.53669 -10.27896 -10.04057 -9.75616 -9.66055 -9.25839 -8.84894 -8.52015 -7.86188 -6.08421 -4.14890 3.27583 3.32478 3.35711 4.01125 4.34209 4.58201 4.60467 4.79130 5.21204 5.22804 5.41927 5.64077 5.79698 5.93388 6.11342 6.18650 6.28663 6.32120 6.52162 6.63797 6.65263 6.97414 7.04187 7.38735 7.44951 7.55957 7.74604 7.98899 8.21509 8.38058 8.90720 9.50512 10.97337 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.008934 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.866332 B = 3133.425361 C = 3543.614103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C 0.186 3.814 4 H 0.010 0.990 5 C -0.512 4.512 6 H 0.061 0.939 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.459 5.459 14 C -0.011 4.011 15 C 0.079 3.921 16 F -0.180 7.180 17 C 0.069 3.931 18 O -0.564 6.564 19 C 0.010 3.990 20 H 0.033 0.967 21 H 0.047 0.953 22 H 0.038 0.962 23 H 0.096 0.904 24 H 0.041 0.959 25 H 0.262 0.738 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.377 0.623 31 H 0.086 0.914 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.760 7.843 2.912 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C 0.079 3.921 4 H 0.027 0.973 5 C -0.551 4.551 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.182 5.182 14 C -0.140 4.140 15 C 0.060 3.940 16 F -0.160 7.160 17 C -0.009 4.009 18 O -0.369 6.369 19 C -0.120 4.120 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.114 0.886 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.223 0.777 31 H 0.104 0.896 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.384 6.646 3.554 9.263 hybrid contribution 0.720 0.906 -1.141 1.625 sum -4.664 7.552 2.413 9.198 Atomic orbital electron populations 1.22051 0.99523 0.99509 1.00191 1.21518 0.91520 0.99135 1.02648 1.19851 0.95873 0.92028 0.84334 0.97287 1.21075 0.90699 1.38147 1.05153 0.92080 1.24929 0.98384 0.95068 0.95606 1.69871 1.35055 1.38386 1.09514 0.86570 0.85326 0.78252 0.77344 1.20150 1.21271 1.20296 1.69042 1.01435 1.10594 1.37131 1.24510 0.96411 0.93592 0.99531 1.22202 0.99812 0.94767 0.77214 1.92815 1.97148 1.97046 1.29035 1.22638 0.85593 0.96208 0.96504 1.86558 1.35481 1.46382 1.68491 1.24114 0.94879 0.92278 1.00728 0.94788 0.93393 0.94240 0.88631 0.94025 0.92785 0.90649 0.89501 0.92556 0.91641 0.77654 0.89554 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.13 37.16 0.34 -2.82 16 2 C -0.11 -2.66 5.45 -26.73 -0.15 -2.80 16 3 C 0.19 4.58 1.37 -68.86 -0.09 4.49 16 4 H 0.01 0.25 7.52 -51.93 -0.39 -0.14 16 5 C -0.51 -13.78 8.08 -34.44 -0.28 -14.06 16 6 H 0.06 1.65 7.43 -52.49 -0.39 1.26 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -24.73 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.46 -10.07 6.10 -237.83 -1.45 -11.52 16 14 C -0.01 -0.21 5.04 -7.49 -0.04 -0.24 16 15 C 0.08 1.38 2.10 -90.07 -0.19 1.19 16 16 F -0.18 -3.54 17.15 2.25 0.04 -3.50 16 17 C 0.07 0.94 6.83 37.16 0.25 1.19 16 18 O -0.56 -7.48 13.52 -35.23 -0.48 -7.96 16 19 C 0.01 0.19 6.11 -7.48 -0.05 0.14 16 20 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.92 5.09 -51.93 -0.26 0.66 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 24 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 26 H 0.08 1.35 7.34 -51.93 -0.38 0.97 16 27 H 0.09 1.62 6.80 -51.93 -0.35 1.27 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.79 7.91 -51.93 -0.41 0.37 16 30 H 0.38 2.86 9.12 45.56 0.42 3.27 16 31 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 32 H 0.08 1.57 7.86 -51.92 -0.41 1.16 16 LS Contribution 262.37 15.07 3.95 3.95 Total: -1.00 -30.12 262.37 -6.36 -36.49 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.74 Total: 2.03 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -0.29 Total: -11.33 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.82 Total: -35.63 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.48 Total: -7.96 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.12 -6.36 -36.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.629 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds