Wall clock time and date at job start Mon Mar 30 2020 17:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38230 * 119.99922 * 2 1 4 4 C 1.38237 * 119.99776 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99977 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00059 * 359.95583 * 4 3 2 7 7 C 1.38234 * 120.00047 * 0.02778 * 6 4 3 8 8 C 1.50700 * 120.00215 * 179.97438 * 7 6 4 9 9 N 1.46906 * 109.47183 * 89.99482 * 8 7 6 10 10 C 1.46901 * 110.99793 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46921 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.38235 * 120.00070 * 0.24333 * 7 6 4 20 20 H 1.09001 * 109.46650 * 89.99979 * 1 2 3 21 21 H 1.08996 * 109.46883 * 210.00016 * 1 2 3 22 22 H 1.08999 * 109.46794 * 330.00021 * 1 2 3 23 23 H 1.07996 * 120.00189 * 0.02562 * 3 2 1 24 24 H 1.08996 * 109.47607 * 269.98203 * 5 4 3 25 25 H 1.09001 * 109.47068 * 29.98205 * 5 4 3 26 26 H 1.09003 * 109.47294 * 149.97773 * 5 4 3 27 27 H 1.08004 * 120.00041 * 179.97438 * 6 4 3 28 28 H 1.08995 * 109.46796 * 329.99687 * 8 7 6 29 29 H 1.09002 * 109.47497 * 209.99481 * 8 7 6 30 30 H 1.00898 * 110.99995 * 303.95361 * 9 8 7 31 31 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 32 32 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 33 33 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.00238 * 179.72971 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0001 7 6 3.5806 -1.1972 0.0002 8 6 4.3340 -2.5023 0.0000 9 7 4.5794 -2.9263 1.3850 10 6 5.3142 -4.1977 1.4240 11 6 5.5474 -4.5993 2.8576 12 1 5.1857 -3.9729 3.6596 13 6 6.2218 -5.7670 3.1455 14 7 6.6619 -6.5300 2.1689 15 14 6.5103 -6.2651 4.9225 16 1 5.9204 -5.2439 5.8250 17 1 5.8696 -7.5802 5.1782 18 1 7.9697 -6.3675 5.1772 19 6 2.1982 -1.1972 -0.0049 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6583 2.1324 0.0004 24 1 4.5157 2.8165 -1.0289 25 1 3.7451 3.2620 0.5125 26 1 5.2866 2.3720 0.5127 27 1 5.3518 -0.0001 -0.0010 28 1 5.2862 -2.3720 -0.5142 29 1 3.7447 -3.2621 -0.5134 30 1 5.0686 -2.2104 1.9010 31 1 6.2732 -4.0789 0.9197 32 1 4.7319 -4.9693 0.9202 33 1 7.1366 -7.3513 2.3714 34 1 1.6582 -2.1325 -0.0091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049856424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:12:38 Heat of formation + Delta-G solvation = 1.672384 kcal Electronic energy + Delta-G solvation = -13921.253307 eV Core-core repulsion = 11624.835629 eV Total energy + Delta-G solvation = -2296.417678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.41123 -35.48815 -33.39130 -32.88187 -31.32701 -27.63730 -26.77975 -26.52294 -24.26928 -21.44706 -20.57015 -20.20033 -16.49736 -16.03615 -15.62524 -14.77369 -14.35741 -14.09443 -13.86980 -13.25233 -13.19945 -13.01392 -12.74762 -12.50871 -12.21303 -11.99645 -11.43515 -11.32290 -11.28833 -10.89144 -10.75221 -10.65967 -10.48506 -9.91717 -9.17907 -8.49695 -8.39159 -8.34101 -7.28388 -6.02841 -4.04676 1.57197 1.59546 3.31750 3.38826 3.44530 3.91382 4.44670 4.87282 4.92924 5.01456 5.30291 5.33208 5.39114 5.46691 5.54704 5.57439 5.63649 5.70787 5.78423 5.84873 5.88894 6.01734 6.17430 6.37783 6.39983 6.73311 6.75056 6.96101 7.23062 7.26800 7.41667 7.79181 8.12410 8.39430 8.60784 9.04934 9.60296 11.08373 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.005233 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.045212 B = 5349.290809 C = 5563.690818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.131 4.131 4 C -0.088 4.088 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.059 4.059 8 C 0.093 3.907 9 N -0.683 5.683 10 C 0.192 3.808 11 C -0.513 4.513 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.105 4.105 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.115 0.885 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.330 0.670 31 H -0.013 1.013 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 15.044 -5.771 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.088 4.088 5 C -0.168 4.168 6 C -0.141 4.141 7 C -0.059 4.059 8 C -0.036 4.036 9 N -0.314 5.314 10 C 0.066 3.934 11 C -0.552 4.552 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.124 4.124 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.133 0.867 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.135 0.865 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.146 0.854 31 H 0.005 0.995 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.377 14.551 -5.734 17.742 hybrid contribution 1.157 -0.177 0.637 1.333 sum -7.220 14.374 -5.096 16.873 Atomic orbital electron populations 1.20760 0.91526 1.02613 1.01926 1.19862 0.95789 0.93171 0.99973 1.20779 0.93453 0.97209 1.03483 1.19803 0.93782 0.95045 1.00135 1.20754 0.99914 0.94205 1.01927 1.20929 0.99552 0.91593 1.02010 1.20007 0.93922 0.94958 0.97015 1.20892 0.97194 0.92515 0.92989 1.60738 1.54268 1.07085 1.09261 1.19598 0.90863 0.85551 0.97397 1.21226 1.35104 1.06677 0.92156 0.91886 1.24992 0.95665 0.96372 0.97565 1.69975 1.38643 1.13836 1.31348 0.86420 0.77707 0.78471 0.84693 1.19638 1.20971 1.21078 1.20922 0.93654 0.97393 1.00391 0.91531 0.91469 0.91904 0.86717 0.91541 0.91864 0.91617 0.86489 0.95452 0.90930 0.85394 0.99537 0.95328 0.92962 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.09 -1.18 5.88 -104.62 -0.62 -1.79 16 3 C -0.13 -1.68 9.36 -39.58 -0.37 -2.05 16 4 C -0.09 -1.16 5.88 -104.63 -0.62 -1.77 16 5 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 6 C -0.12 -1.83 9.36 -39.58 -0.37 -2.20 16 7 C -0.06 -0.97 5.39 -104.62 -0.56 -1.53 16 8 C 0.09 1.75 5.81 -4.97 -0.03 1.72 16 9 N -0.68 -15.28 6.48 -116.33 -0.75 -16.04 16 10 C 0.19 5.16 5.44 -4.97 -0.03 5.13 16 11 C -0.51 -14.83 9.32 -34.44 -0.32 -15.16 16 12 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 15 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 C -0.11 -1.62 9.36 -39.58 -0.37 -1.99 16 20 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 22 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 23 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 28 H 0.03 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 30 H 0.33 7.16 8.71 -39.29 -0.34 6.81 16 31 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 291.99 15.07 4.40 4.40 Total: -1.00 -30.74 291.99 -8.66 -39.40 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.37 Total: 1.40 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.66 Total: -19.68 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.02 Total: -42.45 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.74 -8.66 -39.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.075 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds