Wall clock time and date at job start Mon Mar 30 2020 17:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35733 * 117.00225 * 2 1 4 4 C 1.39290 * 120.84813 * 0.02562 * 3 2 1 5 5 C 1.37945 * 119.09384 * 180.02562 * 4 3 2 6 6 N 1.31976 * 120.82626 * 359.97438 * 5 4 3 7 7 C 1.31944 * 121.85908 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.58414 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47051 * 275.00146 * 8 7 6 10 10 C 1.46500 * 119.99677 * 269.99466 * 9 8 7 11 11 C 1.36940 * 120.00030 * 90.00568 * 9 8 7 12 12 H 1.07996 * 120.00282 * 22.34213 * 11 9 8 13 13 C 1.38814 * 119.99362 * 202.34524 * 11 9 8 14 14 N 1.31618 * 120.00561 * 11.33082 * 13 11 9 15 15 Si 1.86806 * 119.99429 * 191.32845 * 13 11 9 16 16 H 1.48499 * 109.47180 * 60.00397 * 15 13 11 17 17 H 1.48501 * 109.46821 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47264 * 299.99837 * 15 13 11 19 19 C 1.37993 * 120.82712 * 0.27178 * 7 6 5 20 20 H 1.08997 * 109.47295 * 60.00053 * 1 2 3 21 21 H 1.09004 * 109.46936 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46926 * 299.99730 * 1 2 3 23 23 H 1.08008 * 120.45103 * 0.02562 * 4 3 2 24 24 H 1.08001 * 119.58417 * 180.02562 * 5 4 3 25 25 H 1.09003 * 109.46786 * 154.99947 * 8 7 6 26 26 H 1.09000 * 109.46733 * 35.00136 * 8 7 6 27 27 H 1.09000 * 109.46537 * 94.22666 * 10 9 8 28 28 H 1.09002 * 109.47179 * 214.22136 * 10 9 8 29 29 H 1.08993 * 109.47525 * 334.23147 * 10 9 8 30 30 H 0.97000 * 120.00210 * 179.97438 * 14 13 11 31 31 H 1.07995 * 120.45094 * 179.70752 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 0.0005 5 6 1.9677 3.5980 0.0000 6 7 3.2866 3.6457 -0.0005 7 6 4.0230 2.5509 -0.0011 8 6 5.5258 2.6651 -0.0022 9 7 6.0025 2.8220 -1.3785 10 6 6.3366 1.6402 -2.1772 11 6 6.1360 4.0735 -1.9184 12 1 6.2474 4.9314 -1.2719 13 6 6.1281 4.2391 -3.2966 14 7 5.7724 3.2411 -4.0774 15 14 6.6222 5.8788 -4.0429 16 1 8.0179 6.2006 -3.6509 17 1 6.5307 5.7966 -5.5228 18 1 5.7114 6.9423 -3.5484 19 6 3.4345 1.3028 -0.0067 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2244 2.3567 0.0014 24 1 1.4008 4.5173 0.0008 25 1 5.9589 1.7639 0.4318 26 1 5.8247 3.5320 0.5870 27 1 5.4719 1.3482 -2.7732 28 1 7.1717 1.8726 -2.8382 29 1 6.6147 0.8207 -1.5147 30 1 5.7665 3.3571 -5.0405 31 1 4.0432 0.4107 -0.0118 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609311857.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:18:26 Heat of formation + Delta-G solvation = 3.080865 kcal Electronic energy + Delta-G solvation = -15007.480846 eV Core-core repulsion = 12482.553760 eV Total energy + Delta-G solvation = -2524.927086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.45585 -39.27091 -37.31932 -33.80051 -32.38050 -31.92310 -28.76120 -28.01328 -27.33715 -24.31481 -23.80296 -22.06479 -18.99498 -18.66025 -17.81319 -16.89316 -16.73049 -16.56998 -15.80469 -15.59653 -15.16163 -15.02744 -14.53233 -14.15113 -13.77231 -13.21544 -12.85641 -12.76454 -12.56296 -12.44324 -12.24292 -12.08919 -11.99614 -11.86677 -10.64493 -10.30426 -9.93590 -9.76832 -8.83293 -7.82271 -5.29101 0.24978 0.50642 1.46274 1.49358 1.55344 2.22950 2.51924 2.92767 3.33371 3.62397 3.80266 3.85238 4.03324 4.31309 4.37030 4.37156 4.43144 4.63712 4.70539 4.83844 4.88748 4.92338 5.10005 5.18965 5.32710 5.63559 5.69215 5.73483 6.30656 6.32991 7.14719 7.33410 7.84197 8.26889 9.21245 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.007680 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.989905 B = 3644.909115 C = 3783.701024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.157 3.843 4 C -0.270 4.270 5 C 0.120 3.880 6 N -0.526 5.526 7 C 0.144 3.856 8 C 0.188 3.812 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.246 4.246 12 H 0.070 0.930 13 C -0.056 4.056 14 N -0.941 5.941 15 Si 0.970 3.030 16 H -0.274 1.274 17 H -0.295 1.295 18 H -0.280 1.280 19 C -0.217 4.217 20 H 0.061 0.939 21 H 0.125 0.875 22 H 0.072 0.928 23 H 0.168 0.832 24 H 0.176 0.824 25 H 0.087 0.913 26 H 0.063 0.937 27 H -0.004 1.004 28 H 0.024 0.976 29 H 0.037 0.963 30 H 0.246 0.754 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 -5.105 9.159 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.103 3.897 4 C -0.291 4.291 5 C -0.038 4.038 6 N -0.240 5.240 7 C 0.004 3.996 8 C 0.061 3.939 9 N -0.323 5.323 10 C 0.033 3.967 11 C -0.377 4.377 12 H 0.088 0.912 13 C -0.250 4.250 14 N -0.588 5.588 15 Si 0.798 3.202 16 H -0.199 1.199 17 H -0.221 1.221 18 H -0.206 1.206 19 C -0.239 4.239 20 H 0.080 0.920 21 H 0.143 0.857 22 H 0.091 0.909 23 H 0.185 0.815 24 H 0.193 0.807 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.015 0.985 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.615 -4.552 8.978 13.920 hybrid contribution -0.600 0.075 -0.936 1.114 sum -10.216 -4.476 8.042 13.750 Atomic orbital electron populations 1.23431 0.75840 1.05964 1.02537 1.86026 1.24085 1.26017 1.88030 1.19405 0.92252 0.85372 0.92628 1.22354 1.02472 0.92342 1.11931 1.23062 0.90032 0.98406 0.92255 1.67576 1.07908 1.33083 1.15390 1.22579 0.99420 0.87394 0.90159 1.20123 0.85490 1.01408 0.86892 1.44297 1.73348 1.03406 1.11213 1.20601 0.97258 0.86429 0.92456 1.19475 1.41817 0.86225 0.90153 0.91224 1.25818 1.01237 1.00705 0.97265 1.70247 1.52951 1.32614 1.03000 0.85298 0.78532 0.79777 0.76595 1.19934 1.22079 1.20604 1.21381 0.92839 0.99540 1.10140 0.92000 0.85720 0.90916 0.81497 0.80656 0.89535 0.91854 0.98528 0.95697 0.94417 0.94466 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.84 113.37 1.12 1.39 16 2 O -0.33 -9.44 10.51 -90.57 -0.95 -10.39 16 3 C 0.16 5.25 6.74 22.77 0.15 5.40 16 4 C -0.27 -8.04 9.11 22.45 0.20 -7.84 16 5 C 0.12 4.12 11.17 84.60 0.95 5.06 16 6 N -0.53 -22.67 10.27 -184.12 -1.89 -24.56 16 7 C 0.14 6.11 6.36 42.49 0.27 6.38 16 8 C 0.19 8.08 6.01 85.64 0.51 8.60 16 9 N -0.60 -31.36 2.91 -731.31 -2.13 -33.49 16 10 C 0.18 9.03 9.01 127.77 1.15 10.18 16 11 C -0.25 -14.10 9.67 84.03 0.81 -13.29 16 12 H 0.07 3.94 7.84 -2.91 -0.02 3.92 16 13 C -0.06 -3.26 5.13 84.86 0.44 -2.82 16 14 N -0.94 -57.72 10.58 21.65 0.23 -57.49 16 15 Si 0.97 46.97 29.57 68.60 2.03 49.00 16 16 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 17 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 C -0.22 -8.30 9.68 22.45 0.22 -8.08 16 20 H 0.06 1.01 7.71 -2.39 -0.02 0.99 16 21 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 22 H 0.07 1.01 7.71 -2.39 -0.02 0.99 16 23 H 0.17 3.51 6.47 -2.91 -0.02 3.49 16 24 H 0.18 4.76 8.06 -2.91 -0.02 4.74 16 25 H 0.09 3.13 7.76 -2.39 -0.02 3.11 16 26 H 0.06 2.71 8.03 -2.39 -0.02 2.69 16 27 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 28 H 0.02 1.35 7.19 -2.39 -0.02 1.33 16 29 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.14 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -71.41 268.44 4.22 -67.18 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.11 Total: 4.75 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.82 Total: 4.99 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -3.79 Total: -115.54 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.95 Total: -10.39 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -71.41 4.22 -67.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609311857.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.265 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds