Wall clock time and date at job start Mon Mar 30 2020 17:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 115.55975 * 2 1 4 4 C 1.53069 * 117.51370 * 145.69851 * 2 1 3 5 5 C 1.52999 * 117.50139 * 214.31102 * 2 1 3 6 6 H 1.08994 * 117.50139 * 144.99252 * 5 2 1 7 7 C 1.50707 * 117.49653 * 359.97438 * 5 2 1 8 8 N 1.30271 * 126.28058 * 300.09427 * 7 5 2 9 9 N 1.28675 * 109.37879 * 179.73274 * 8 7 5 10 10 C 1.30271 * 109.37847 * 0.43419 * 9 8 7 11 11 C 1.50703 * 126.28084 * 179.82620 * 10 9 8 12 12 C 1.53000 * 109.46653 * 89.69772 * 11 10 9 13 13 C 1.50708 * 109.46973 * 179.97438 * 12 11 10 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 O 1.34364 * 107.43966 * 359.57215 * 10 9 8 22 22 H 1.09004 * 109.46870 * 205.69565 * 1 2 3 23 23 H 1.09000 * 109.46926 * 325.68797 * 1 2 3 24 24 H 1.08994 * 109.46955 * 85.69179 * 1 2 3 25 25 H 1.08993 * 117.51397 * 0.02562 * 4 2 1 26 26 H 1.09005 * 117.51537 * 214.95251 * 4 2 1 27 27 H 1.08996 * 109.47057 * 329.69841 * 11 10 9 28 28 H 1.08996 * 109.47084 * 209.68878 * 11 10 9 29 29 H 1.08994 * 109.48028 * 59.99997 * 12 11 10 30 30 H 1.09000 * 109.47206 * 299.99851 * 12 11 10 31 31 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2371 -1.1215 0.7651 5 6 2.2365 -1.1210 -0.7650 6 1 3.1713 -0.8750 -1.2686 7 6 1.3721 -2.1410 -1.4603 8 7 0.4989 -2.9253 -0.8951 9 7 -0.0578 -3.6611 -1.7920 10 6 0.4479 -3.3776 -2.9586 11 6 0.0737 -4.0155 -4.2716 12 6 -1.0756 -3.2326 -4.9096 13 6 -1.4495 -3.8701 -6.2231 14 1 -0.9206 -4.7462 -6.5679 15 6 -2.4675 -3.3353 -6.9838 16 7 -2.7941 -3.8919 -8.1298 17 14 -3.3827 -1.8203 -6.3869 18 1 -4.5492 -2.2373 -5.5679 19 1 -3.8540 -1.0343 -7.5554 20 1 -2.4727 -0.9848 -5.5629 21 8 1.3604 -2.4082 -2.7771 22 1 -0.3633 -0.9261 0.4456 23 1 -0.3633 0.8488 0.5793 24 1 -0.3633 0.0772 -1.0247 25 1 1.6124 -1.8595 1.2680 26 1 3.1725 -0.8759 1.2680 27 1 -0.2398 -5.0451 -4.0991 28 1 0.9351 -4.0049 -4.9393 29 1 -0.7623 -2.2030 -5.0822 30 1 -1.9371 -3.2431 -4.2420 31 1 -3.5100 -3.5155 -8.6651 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256674607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:17:09 Heat of formation + Delta-G solvation = 47.882199 kcal Electronic energy + Delta-G solvation = -14621.223813 eV Core-core repulsion = 12098.239459 eV Total energy + Delta-G solvation = -2522.984354 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.89055 -38.21340 -35.79297 -34.44882 -32.17909 -29.96916 -28.68751 -26.19755 -24.54009 -22.52498 -21.60511 -20.65523 -20.43563 -17.31848 -16.88581 -16.75434 -15.70061 -15.04691 -14.36470 -13.90336 -13.50513 -13.34940 -12.76001 -12.70050 -12.46605 -12.04456 -11.79465 -11.76070 -11.44271 -11.17766 -11.03855 -10.62864 -10.45730 -10.37234 -10.15108 -9.91813 -9.38170 -8.90032 -8.63842 -6.14596 -4.15156 1.42737 2.47715 2.65731 3.26428 3.33684 3.37061 3.52073 4.04979 4.37029 4.37462 4.47205 4.67999 4.84054 5.08546 5.19256 5.39713 5.45761 5.58100 5.67099 5.76149 5.80697 5.85318 5.88832 6.03756 6.07678 6.19098 6.44680 7.01787 7.14378 7.60430 8.37535 8.64818 8.87300 9.46125 10.98069 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041168 B = 0.006397 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.978132 B = 4376.136622 C = 4775.001103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 H 0.118 0.882 4 C -0.144 4.144 5 C -0.077 4.077 6 H 0.134 0.866 7 C 0.172 3.828 8 N -0.286 5.286 9 N -0.301 5.301 10 C 0.191 3.809 11 C -0.016 4.016 12 C -0.008 4.008 13 C -0.526 4.526 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.267 1.267 21 O -0.224 6.224 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 7.771 14.969 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 H 0.136 0.864 4 C -0.181 4.181 5 C -0.097 4.097 6 H 0.151 0.849 7 C -0.039 4.039 8 N -0.133 5.133 9 N -0.147 5.147 10 C -0.019 4.019 11 C -0.054 4.054 12 C -0.046 4.046 13 C -0.564 4.564 14 H 0.096 0.904 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.704 3.296 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.192 1.192 21 O -0.103 6.103 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.110 0.890 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.176 7.196 15.712 19.566 hybrid contribution 0.194 1.313 -0.847 1.574 sum 9.370 8.509 14.865 19.524 Atomic orbital electron populations 1.21460 0.92031 1.03049 1.02321 1.22572 0.96349 0.94007 1.01586 0.86407 1.23310 1.03176 1.01218 0.90434 1.20170 0.98730 0.96645 0.94171 0.84852 1.26537 0.99316 0.99638 0.78408 1.74229 1.07658 1.05422 1.25982 1.74413 1.22413 1.21084 0.96809 1.28917 0.85892 0.86996 1.00059 1.20505 1.01374 0.99606 0.83951 1.19625 0.92399 0.95815 0.96748 1.20934 1.18745 1.14544 1.02139 0.90375 1.24940 0.96492 0.96890 0.94599 1.69889 1.30204 1.40719 1.12672 0.86821 0.80607 0.83599 0.78569 1.19979 1.21084 1.19198 1.84778 1.50974 1.46582 1.27981 0.91052 0.91631 0.92425 0.87009 0.87363 0.87442 0.88990 0.96101 0.95929 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.13 37.16 0.34 -1.15 16 2 C -0.13 -1.19 6.41 -90.58 -0.58 -1.77 16 3 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.14 -1.28 9.79 -26.69 -0.26 -1.54 16 5 C -0.08 -0.86 6.33 -91.77 -0.58 -1.45 16 6 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 7 C 0.17 2.77 7.14 -12.94 -0.09 2.68 16 8 N -0.29 -5.19 10.98 32.55 0.36 -4.84 16 9 N -0.30 -6.09 12.22 32.55 0.40 -5.69 16 10 C 0.19 3.72 7.73 -12.94 -0.10 3.62 16 11 C -0.02 -0.31 5.78 -27.88 -0.16 -0.47 16 12 C -0.01 -0.18 4.02 -27.88 -0.11 -0.29 16 13 C -0.53 -14.52 9.66 -34.44 -0.33 -14.85 16 14 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 17 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 O -0.22 -4.06 10.87 5.37 0.06 -4.01 16 22 H 0.07 0.91 7.21 -51.93 -0.37 0.54 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.11 1.15 7.82 -51.93 -0.41 0.74 16 26 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 28 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 30 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 270.82 15.07 4.08 4.08 Total: -1.00 -31.49 270.82 -5.07 -36.57 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.09 Total: -3.55 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.98 Total: -13.23 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 1.53 Total: -36.82 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: 0.06 Total: -4.01 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.49 -5.07 -36.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256674607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.448 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds