Wall clock time and date at job start Mon Mar 30 2020 17:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46683 * 2 1 4 4 C 1.36960 * 120.00351 * 262.89241 * 3 2 1 5 5 H 1.07998 * 120.00458 * 185.47752 * 4 3 2 6 6 C 1.38985 * 119.99546 * 5.48096 * 4 3 2 7 7 N 1.31414 * 120.00273 * 34.63207 * 6 4 3 8 8 Si 1.86797 * 119.99800 * 214.63194 * 6 4 3 9 9 H 1.48499 * 109.47012 * 95.00006 * 8 6 4 10 10 H 1.48504 * 109.47188 * 214.99603 * 8 6 4 11 11 H 1.48494 * 109.47246 * 335.00384 * 8 6 4 12 12 C 1.34775 * 119.99989 * 82.90048 * 3 2 1 13 13 O 1.21641 * 120.00431 * 181.41692 * 12 3 2 14 14 C 1.47298 * 120.00084 * 1.41272 * 12 3 2 15 15 C 1.47035 * 127.19635 * 350.96851 * 14 12 3 16 16 C 1.34175 * 105.95934 * 180.14987 * 15 14 12 17 17 O 1.34216 * 109.14339 * 359.60192 * 16 15 14 18 18 C 1.33673 * 110.91123 * 0.26633 * 17 16 15 19 19 C 1.50699 * 125.80807 * 179.97438 * 18 17 16 20 20 H 1.09003 * 109.46808 * 60.00316 * 1 2 3 21 21 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47316 * 300.00238 * 1 2 3 23 23 H 1.08994 * 109.47717 * 240.00198 * 2 1 3 24 24 H 1.08997 * 109.47092 * 119.99362 * 2 1 3 25 25 H 0.96998 * 120.00180 * 179.97438 * 7 6 4 26 26 H 1.07996 * 127.02277 * 0.02562 * 15 14 12 27 27 H 1.08000 * 125.42340 * 179.87320 * 16 15 14 28 28 H 1.08997 * 109.47570 * 0.02826 * 19 18 17 29 29 H 1.09009 * 109.46955 * 120.02747 * 19 18 17 30 30 H 1.08994 * 109.47549 * 240.02353 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3849 1.9781 -1.1770 5 1 2.8274 2.9633 -1.1680 6 6 2.1874 1.3159 -2.3828 7 7 1.1397 0.5387 -2.5418 8 14 3.4113 1.5306 -3.7776 9 1 4.4030 0.4259 -3.7404 10 1 2.6913 1.5058 -5.0762 11 1 4.1126 2.8306 -3.6250 12 6 2.1069 2.0647 1.1582 13 8 2.4878 3.2200 1.1553 14 6 1.7423 1.4128 2.4278 15 6 1.0958 0.1037 2.6012 16 6 0.9602 -0.0684 3.9250 17 8 1.4670 0.9990 4.5617 18 6 1.9391 1.8952 3.6894 19 6 2.5790 3.2139 4.0395 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8935 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 1.0017 0.0768 -3.3836 26 1 0.7903 -0.5790 1.8222 27 1 0.5182 -0.9305 4.4022 28 1 2.6011 3.3309 5.1229 29 1 3.5971 3.2383 3.6506 30 1 2.0020 4.0263 3.5980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:16:20 Heat of formation + Delta-G solvation = 9.990037 kcal Electronic energy + Delta-G solvation = -15659.952323 eV Core-core repulsion = 13037.606179 eV Total energy + Delta-G solvation = -2622.346144 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.96254 -38.33084 -35.15018 -32.86037 -31.69618 -31.05940 -29.48454 -26.60504 -24.93770 -22.55024 -21.74144 -20.80451 -18.30553 -17.07281 -16.43793 -15.73118 -15.50253 -14.61504 -14.17634 -13.76097 -13.54411 -13.08708 -12.61223 -12.51373 -12.34685 -11.96199 -11.47699 -11.25519 -11.12996 -11.01238 -10.83622 -10.38260 -10.20271 -9.92519 -8.97701 -8.86677 -8.37680 -7.99867 -7.76605 -6.49022 -3.70659 2.08307 2.68169 3.18158 3.26306 3.31986 3.38534 4.12040 4.36025 4.90189 5.05917 5.13924 5.48594 5.64275 5.77214 6.02761 6.06306 6.14995 6.19763 6.32776 6.51893 6.54694 6.67639 6.72018 6.93794 7.17041 7.41576 7.59791 7.69702 8.13024 8.50589 9.18375 9.44497 10.06616 10.54345 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040850 B = 0.009370 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.273037 B = 2987.482260 C = 3512.723519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.102 3.898 3 N -0.423 5.423 4 C -0.315 4.315 5 H 0.109 0.891 6 C 0.039 3.961 7 N -0.845 5.845 8 Si 0.908 3.092 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.498 3.502 13 O -0.597 6.597 14 C -0.198 4.198 15 C -0.207 4.207 16 C -0.066 4.066 17 O -0.187 6.187 18 C 0.028 3.972 19 C -0.058 4.058 20 H 0.092 0.908 21 H 0.040 0.960 22 H 0.039 0.961 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.269 0.731 26 H 0.179 0.821 27 H 0.198 0.802 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -4.078 8.072 9.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.140 5.140 4 C -0.442 4.442 5 H 0.126 0.874 6 C -0.167 4.167 7 N -0.482 5.482 8 Si 0.734 3.266 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C 0.289 3.711 13 O -0.485 6.485 14 C -0.203 4.203 15 C -0.226 4.226 16 C -0.131 4.131 17 O -0.085 6.085 18 C -0.024 4.024 19 C -0.114 4.114 20 H 0.111 0.889 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.196 0.804 27 H 0.215 0.785 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.599 -3.618 8.173 8.958 hybrid contribution 0.249 -0.410 -1.012 1.120 sum -0.350 -4.028 7.161 8.224 Atomic orbital electron populations 1.22275 0.96615 1.00001 1.02988 1.21914 0.94525 0.84284 1.01421 1.43634 1.53803 1.10952 1.05562 1.19711 1.37969 1.04105 0.82369 0.87380 1.25169 0.96039 0.97061 0.98424 1.70221 1.21966 1.29854 1.26151 0.86207 0.81401 0.79236 0.79784 1.20368 1.21153 1.19160 1.16813 0.85927 0.85964 0.82402 1.90574 1.54061 1.17156 1.86695 1.21585 1.07694 0.96329 0.94646 1.24066 1.03752 0.98076 0.96730 1.23761 1.05250 0.91725 0.92394 1.83646 1.60964 1.25821 1.38038 1.22588 1.00120 0.92763 0.86920 1.20242 1.01029 0.89192 1.00975 0.88924 0.94120 0.94254 0.89099 0.92568 0.92110 0.80447 0.78508 0.91810 0.89472 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 8.25 37.16 0.31 -3.05 16 2 C 0.10 2.30 4.80 -4.04 -0.02 2.28 16 3 N -0.42 -11.12 2.64 -116.07 -0.31 -11.43 16 4 C -0.31 -8.80 9.36 -14.98 -0.14 -8.94 16 5 H 0.11 3.21 7.37 -52.49 -0.39 2.83 16 6 C 0.04 1.00 4.66 -17.45 -0.08 0.92 16 7 N -0.84 -21.51 9.29 55.50 0.52 -20.99 16 8 Si 0.91 20.20 29.67 -169.99 -5.04 15.16 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.50 13.00 7.55 -12.58 -0.09 12.90 16 13 O -0.60 -16.99 15.27 5.24 0.08 -16.91 16 14 C -0.20 -4.32 5.99 -103.28 -0.62 -4.93 16 15 C -0.21 -3.76 7.41 -37.45 -0.28 -4.04 16 16 C -0.07 -1.00 12.03 29.30 0.35 -0.65 16 17 O -0.19 -3.21 10.52 7.60 0.08 -3.13 16 18 C 0.03 0.55 7.38 -34.94 -0.26 0.29 16 19 C -0.06 -0.95 9.21 36.01 0.33 -0.62 16 20 H 0.09 2.22 6.48 -51.93 -0.34 1.89 16 21 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.80 6.19 -51.93 -0.32 0.48 16 23 H 0.09 2.17 5.90 -51.93 -0.31 1.87 16 24 H 0.06 1.14 4.70 -51.93 -0.24 0.90 16 25 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 26 H 0.18 3.05 3.71 -52.49 -0.19 2.86 16 27 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.46 8.14 -51.92 -0.42 1.03 16 30 H 0.09 1.57 7.97 -51.93 -0.41 1.15 16 LS Contribution 248.47 15.07 3.74 3.74 Total: -1.00 -30.74 248.47 -4.46 -35.20 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.03 Total: 4.21 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.50 Total: -5.85 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.21 Total: -32.42 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.16 Total: -20.04 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.04 Total: 15.16 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.74 -4.46 -35.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.192 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds