Wall clock time and date at job start Mon Mar 30 2020 17:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 H 1.09006 * 109.47367 * 184.45413 * 3 2 1 5 5 C 1.50699 * 109.47342 * 304.45717 * 3 2 1 6 6 H 1.08005 * 119.99608 * 115.14969 * 5 3 2 7 7 C 1.37876 * 120.00091 * 295.15089 * 5 3 2 8 8 N 1.31509 * 119.99886 * 352.96681 * 7 5 3 9 9 Si 1.86808 * 119.99969 * 172.97341 * 7 5 3 10 10 H 1.48497 * 109.47009 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47015 * 299.99946 * 9 7 5 12 12 H 1.48503 * 109.46963 * 60.00077 * 9 7 5 13 13 N 1.46905 * 109.47189 * 64.46023 * 3 2 1 14 14 C 1.46895 * 110.99963 * 85.29723 * 13 3 2 15 15 C 1.53004 * 109.46851 * 184.98622 * 14 13 3 16 16 N 1.46505 * 109.46720 * 180.02562 * 15 14 13 17 17 C 1.35310 * 125.86682 * 125.00356 * 16 15 14 18 18 C 1.35344 * 106.17332 * 179.97438 * 17 16 15 19 19 N 1.33770 * 106.50232 * 359.97438 * 18 17 16 20 20 N 1.28643 * 108.88082 * 359.73551 * 19 18 17 21 21 H 1.09001 * 109.47015 * 65.53736 * 1 2 3 22 22 H 1.08998 * 109.47541 * 185.53546 * 1 2 3 23 23 H 1.09005 * 109.46821 * 305.53793 * 1 2 3 24 24 H 1.09004 * 109.46905 * 240.00483 * 2 1 3 25 25 H 1.08998 * 109.47090 * 120.00472 * 2 1 3 26 26 H 0.96998 * 120.00531 * 356.31746 * 8 7 5 27 27 H 1.00895 * 111.00045 * 209.25829 * 13 3 2 28 28 H 1.09004 * 109.47313 * 304.98302 * 14 13 3 29 29 H 1.09000 * 109.47146 * 64.98274 * 14 13 3 30 30 H 1.08997 * 109.47150 * 299.99607 * 15 14 13 31 31 H 1.09000 * 109.47530 * 59.99886 * 15 14 13 32 32 H 1.08002 * 126.91566 * 359.97133 * 17 16 15 33 33 H 1.08012 * 126.75074 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0798 5 6 1.4496 2.1841 -1.1715 6 1 0.7754 3.0109 -1.0029 7 6 1.7700 1.8071 -2.4584 8 7 2.6940 0.8945 -2.6655 9 14 0.8917 2.5928 -3.9079 10 1 1.4151 2.0194 -5.1738 11 1 -0.5655 2.3250 -3.8079 12 1 1.1277 4.0588 -3.8942 13 7 1.6403 2.1032 1.2497 14 6 2.6091 1.8343 2.3206 15 6 2.0978 2.4323 3.6328 16 7 3.0644 2.1647 4.7007 17 6 3.6385 3.0923 5.5012 18 6 4.4576 2.4134 6.3379 19 7 4.3456 1.1206 6.0130 20 7 3.5081 1.0060 5.0433 21 1 -0.3633 0.4256 -0.9354 22 1 -0.3634 -1.0228 0.0991 23 1 -0.3633 0.5974 0.8363 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.1876 0.5254 -1.9166 27 1 1.5199 3.0954 1.1116 28 1 2.7336 0.7576 2.4361 29 1 3.5679 2.2855 2.0649 30 1 1.9734 3.5090 3.5174 31 1 1.1391 1.9812 3.8886 32 1 3.4759 4.1598 5.4774 33 1 5.0794 2.8329 7.1150 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163839003.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:18:08 Heat of formation + Delta-G solvation = 68.064882 kcal Electronic energy + Delta-G solvation = -15210.470007 eV Core-core repulsion = 12693.342112 eV Total energy + Delta-G solvation = -2517.127895 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.18639 -38.72617 -36.36502 -34.33744 -32.70141 -31.96712 -29.95987 -27.30174 -25.48018 -24.50459 -23.50698 -22.20527 -21.26870 -19.16568 -18.33397 -17.47578 -16.58126 -16.04419 -15.89785 -15.65443 -15.29479 -15.17676 -14.58124 -14.26071 -13.57540 -13.36884 -13.20156 -12.87890 -12.61210 -12.46083 -12.01313 -11.95342 -11.89848 -11.79151 -11.63892 -11.11978 -10.60439 -10.43364 -10.34304 -9.32335 -8.57578 -6.29853 0.67133 1.41840 1.56705 1.63366 1.63452 1.81723 2.59159 3.21909 3.34811 3.49837 3.75242 3.92825 4.17082 4.24197 4.31661 4.36837 4.50224 4.53445 4.65364 4.74609 4.91423 5.00885 5.18039 5.28328 5.35918 5.46755 5.64739 5.67606 5.83962 6.03303 6.41193 6.53585 6.75270 7.49910 7.52804 8.79039 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050725 B = 0.005457 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.866142 B = 5129.626589 C = 5268.883966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C 0.210 3.790 4 H -0.044 1.044 5 C -0.596 4.596 6 H 0.060 0.940 7 C -0.025 4.025 8 N -0.937 5.937 9 Si 1.110 2.890 10 H -0.292 1.292 11 H -0.270 1.270 12 H -0.269 1.269 13 N -0.664 5.664 14 C 0.056 3.944 15 C 0.127 3.873 16 N -0.288 5.288 17 C -0.034 4.034 18 C -0.066 4.066 19 N -0.317 5.317 20 N -0.134 5.134 21 H 0.037 0.963 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.256 0.744 27 H 0.344 0.656 28 H 0.056 0.944 29 H 0.014 0.986 30 H 0.144 0.856 31 H 0.114 0.886 32 H 0.238 0.762 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 8.560 13.428 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C 0.101 3.899 4 H -0.026 1.026 5 C -0.634 4.634 6 H 0.078 0.922 7 C -0.224 4.224 8 N -0.574 5.574 9 Si 0.932 3.068 10 H -0.218 1.218 11 H -0.196 1.196 12 H -0.195 1.195 13 N -0.295 5.295 14 C -0.074 4.074 15 C 0.006 3.994 16 N -0.082 5.082 17 C -0.186 4.186 18 C -0.224 4.224 19 N -0.182 5.182 20 N -0.113 5.113 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.163 0.837 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.162 0.838 31 H 0.132 0.868 32 H 0.254 0.746 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.657 6.485 11.673 13.615 hybrid contribution 1.331 1.255 1.332 2.262 sum -1.326 7.739 13.004 15.191 Atomic orbital electron populations 1.21308 0.94610 0.99084 1.01493 1.21407 0.97887 0.97498 0.97461 1.19049 0.90945 0.92506 0.87395 1.02609 1.22192 1.30527 1.18320 0.92376 0.92196 1.27051 0.96263 0.95708 1.03345 1.70910 1.22728 1.28718 1.35054 0.83017 0.75527 0.75665 0.72542 1.21821 1.19575 1.19457 1.60380 1.46171 1.16518 1.06472 1.21981 0.93443 1.00589 0.91427 1.22170 0.90016 1.04954 0.82238 1.47721 1.30278 1.05348 1.24851 1.24535 0.99374 0.99870 0.94783 1.24321 1.04263 0.89217 1.04631 1.75058 1.13234 1.20988 1.08889 1.78330 1.12147 1.07978 1.12878 0.94339 0.94323 0.91858 0.95221 0.95260 0.93381 0.83731 0.92516 0.96762 0.83796 0.86789 0.74585 0.76143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 9.43 71.98 0.68 -3.86 16 2 C -0.10 -4.89 5.51 30.59 0.17 -4.72 16 3 C 0.21 10.06 1.93 44.17 0.09 10.15 16 4 H -0.04 -2.38 7.22 -2.38 -0.02 -2.40 16 5 C -0.60 -30.75 7.13 25.60 0.18 -30.57 16 6 H 0.06 2.98 7.67 -2.91 -0.02 2.96 16 7 C -0.02 -1.35 5.26 84.66 0.45 -0.90 16 8 N -0.94 -55.70 12.94 21.45 0.28 -55.43 16 9 Si 1.11 47.97 29.91 68.60 2.05 50.02 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 12 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 13 N -0.66 -24.55 5.62 -495.44 -2.78 -27.33 16 14 C 0.06 1.83 5.59 86.31 0.48 2.31 16 15 C 0.13 2.81 6.76 86.38 0.58 3.39 16 16 N -0.29 -7.22 3.44 -347.72 -1.20 -8.41 16 17 C -0.03 -0.60 11.57 83.49 0.97 0.36 16 18 C -0.07 -1.40 12.05 83.73 1.01 -0.39 16 19 N -0.32 -9.97 12.41 -58.25 -0.72 -10.69 16 20 N -0.13 -4.45 12.92 37.02 0.48 -3.97 16 21 H 0.04 1.75 7.31 -2.39 -0.02 1.73 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 2.48 7.59 -2.38 -0.02 2.46 16 24 H 0.03 1.56 6.35 -2.38 -0.02 1.54 16 25 H 0.03 1.30 7.33 -2.39 -0.02 1.28 16 26 H 0.26 15.60 6.03 -92.71 -0.56 15.04 16 27 H 0.34 11.75 8.30 -89.70 -0.74 11.01 16 28 H 0.06 2.15 7.28 -2.39 -0.02 2.13 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.14 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.22 2.71 8.06 -2.90 -0.02 2.69 16 Total: -1.00 -69.49 277.47 3.28 -66.21 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.57 Total: 13.83 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 4.60 Total: -24.23 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.94 Total: -105.83 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.05 Total: 50.02 kcal Total: -69.49 3.28 -66.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163839003.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.280 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds