Wall clock time and date at job start Mon Mar 30 2020 17:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47039 * 2 1 4 4 H 1.09008 * 109.47121 * 177.96600 * 3 2 1 5 5 C 1.50703 * 109.46950 * 57.97213 * 3 2 1 6 6 H 1.08004 * 119.99925 * 239.99891 * 5 3 2 7 7 C 1.37877 * 120.00135 * 60.00028 * 5 3 2 8 8 N 1.31513 * 120.00133 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99906 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47298 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47160 * 119.99907 * 9 7 5 12 12 H 1.48501 * 109.47118 * 239.99949 * 9 7 5 13 13 N 1.46897 * 109.47454 * 297.96853 * 3 2 1 14 14 C 1.46895 * 111.00036 * 273.75227 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.93460 * 14 13 3 16 16 N 1.30253 * 125.62175 * 89.69116 * 15 14 13 17 17 C 1.34482 * 108.69839 * 179.83932 * 16 15 14 18 18 C 1.34330 * 107.66995 * 0.42051 * 17 16 15 19 19 C 1.50699 * 126.44280 * 179.77140 * 18 17 16 20 20 O 1.33969 * 125.61472 * 269.99575 * 15 14 13 21 21 H 1.09003 * 109.47072 * 294.44625 * 1 2 3 22 22 H 1.08998 * 109.46989 * 174.45311 * 1 2 3 23 23 H 1.08996 * 109.47419 * 54.45083 * 1 2 3 24 24 H 1.08999 * 109.47720 * 120.00308 * 2 1 3 25 25 H 1.09001 * 109.47148 * 240.00035 * 2 1 3 26 26 H 0.97002 * 120.00166 * 180.02562 * 8 7 5 27 27 H 1.00899 * 111.00019 * 149.79033 * 13 3 2 28 28 H 1.09005 * 109.47061 * 294.92731 * 14 13 3 29 29 H 1.08997 * 109.47274 * 54.93246 * 14 13 3 30 30 H 1.07997 * 126.16162 * 180.16823 * 17 16 15 31 31 H 1.08995 * 109.47028 * 180.02562 * 19 18 17 32 32 H 1.09004 * 109.46479 * 299.99765 * 19 18 17 33 33 H 1.08992 * 109.47338 * 59.99752 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4428 0.0365 5 6 1.4970 2.1673 1.2046 6 1 0.8798 3.0440 1.0745 7 6 1.7880 1.7111 2.4727 8 7 2.5390 0.6432 2.6312 9 14 1.1143 2.6091 3.9658 10 1 0.3025 3.7701 3.5206 11 1 0.2628 1.6847 4.7569 12 1 2.2414 3.0859 4.8069 13 7 1.5908 2.1207 -1.2232 14 6 2.5279 1.8859 -2.3297 15 6 1.9736 2.4900 -3.5942 16 7 2.1798 3.7082 -4.0067 17 6 1.5301 3.8849 -5.1709 18 6 0.9024 2.7347 -5.4662 19 6 0.0459 2.4675 -6.6770 20 8 1.1829 1.8644 -4.4763 21 1 -0.3633 0.4253 0.9356 22 1 -0.3633 -1.0228 -0.0993 23 1 -0.3634 0.5974 -0.8361 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.7435 0.3220 3.5234 27 1 1.4614 3.1084 -1.0623 28 1 3.4878 2.3472 -2.0971 29 1 2.6644 0.8135 -2.4689 30 1 1.5126 4.7900 -5.7598 31 1 -0.3267 1.4439 -6.6398 32 1 -0.7958 3.1601 -6.6865 33 1 0.6403 2.6057 -7.5801 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231652750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:18:28 Heat of formation + Delta-G solvation = -7.476850 kcal Electronic energy + Delta-G solvation = -15274.074900 eV Core-core repulsion = 12721.378518 eV Total energy + Delta-G solvation = -2552.696381 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.26819 -38.26913 -35.74977 -34.89863 -33.40589 -32.38378 -29.49797 -27.58589 -25.64246 -24.99978 -23.13983 -22.00529 -20.98536 -18.73567 -17.73338 -17.65694 -16.84673 -16.04414 -15.67547 -15.33471 -15.24850 -14.70301 -14.13472 -14.00816 -13.80337 -13.64667 -13.26258 -13.06495 -12.82341 -12.64208 -12.43216 -12.32383 -11.98211 -11.69950 -11.52075 -11.33643 -10.81948 -10.55411 -9.61326 -9.16967 -8.10250 -6.21733 0.45924 1.41814 1.44832 1.55125 1.66486 1.77001 2.43626 3.10229 3.19296 3.72312 3.88281 4.11522 4.21834 4.43112 4.56338 4.63622 4.72587 4.73279 4.79951 4.93649 5.09585 5.22927 5.27317 5.33983 5.38595 5.53721 5.70537 5.78739 5.85967 6.24749 6.36781 6.64960 6.78749 6.94922 7.46412 8.95245 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045214 B = 0.006024 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.130790 B = 4647.024540 C = 4843.053796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.223 3.777 4 H -0.021 1.021 5 C -0.525 4.525 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.678 5.678 14 C 0.156 3.844 15 C 0.192 3.808 16 N -0.508 5.508 17 C -0.064 4.064 18 C -0.054 4.054 19 C -0.063 4.063 20 O -0.210 6.210 21 H 0.031 0.969 22 H 0.036 0.964 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.026 0.974 26 H 0.262 0.738 27 H 0.336 0.664 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.211 0.789 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 2.355 -15.308 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.115 3.885 4 H -0.003 1.003 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.780 3.220 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.310 5.310 14 C 0.026 3.974 15 C -0.015 4.015 16 N -0.238 5.238 17 C -0.202 4.202 18 C -0.107 4.107 19 C -0.120 4.120 20 O -0.096 6.096 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.153 0.847 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.228 0.772 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.618 2.105 -15.018 15.590 hybrid contribution 0.290 0.480 1.006 1.151 sum -3.328 2.585 -14.012 14.632 Atomic orbital electron populations 1.21304 0.96255 0.98503 1.00483 1.21346 0.96181 0.97359 0.98953 1.18992 0.91929 0.92297 0.85299 1.00338 1.21401 1.31677 1.12023 0.91246 0.92734 1.25554 0.95275 0.95675 1.01325 1.70003 1.38206 1.24094 1.22942 0.85566 0.78132 0.78707 0.79579 1.19442 1.20675 1.20762 1.60604 1.47210 1.16717 1.06453 1.20189 0.93467 1.00656 0.83065 1.26227 0.93396 0.87739 0.94143 1.70416 1.24313 1.16221 1.12893 1.23574 1.00520 1.00959 0.95178 1.24434 1.03522 0.89365 0.93370 1.20500 0.97726 1.04683 0.89055 1.84425 1.53214 1.42759 1.29225 0.94934 0.94495 0.93299 0.91929 0.95496 0.92884 0.84698 0.91507 0.88436 0.77248 0.90159 0.87447 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.46 71.98 0.68 -4.12 16 2 C -0.10 -4.77 5.58 30.59 0.17 -4.60 16 3 C 0.22 11.04 2.30 44.17 0.10 11.14 16 4 H -0.02 -1.14 7.84 -2.38 -0.02 -1.15 16 5 C -0.52 -28.20 7.34 25.60 0.19 -28.01 16 6 H 0.05 2.94 7.60 -2.91 -0.02 2.91 16 7 C 0.02 1.16 5.30 84.65 0.45 1.60 16 8 N -0.91 -51.39 11.34 21.45 0.24 -51.14 16 9 Si 0.95 43.26 29.54 68.60 2.03 45.28 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.68 -29.14 5.50 -499.45 -2.75 -31.89 16 14 C 0.16 5.84 6.08 85.56 0.52 6.36 16 15 C 0.19 6.87 7.90 88.34 0.70 7.57 16 16 N -0.51 -17.84 11.29 -303.82 -3.43 -21.27 16 17 C -0.06 -1.74 11.80 83.39 0.98 -0.75 16 18 C -0.05 -1.37 7.39 24.79 0.18 -1.19 16 19 C -0.06 -0.86 10.43 71.24 0.74 -0.12 16 20 O -0.21 -6.99 10.78 -3.76 -0.04 -7.03 16 21 H 0.03 1.54 7.37 -2.39 -0.02 1.53 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.05 2.12 7.50 -2.39 -0.02 2.10 16 24 H 0.06 3.34 6.13 -2.39 -0.01 3.32 16 25 H 0.03 1.17 7.43 -2.39 -0.02 1.15 16 26 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.34 14.77 8.24 -89.69 -0.74 14.03 16 28 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.10 3.48 7.40 -2.39 -0.02 3.46 16 30 H 0.21 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -62.81 279.92 1.13 -61.67 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.36 Total: 16.49 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 4.72 Total: -12.11 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -5.93 Total: -104.30 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.04 Total: -7.03 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -62.81 1.13 -61.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231652750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.194 kcal (2) G-P(sol) polarization free energy of solvation -62.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds