Wall clock time and date at job start Mon Mar 30 2020 17:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46719 * 2 1 4 4 H 1.08998 * 109.46948 * 55.00110 * 3 2 1 5 5 C 1.50706 * 109.46898 * 175.00124 * 3 2 1 6 6 H 1.08001 * 119.99769 * 114.52284 * 5 3 2 7 7 C 1.37870 * 119.99909 * 294.52056 * 5 3 2 8 8 N 1.31524 * 119.99786 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00417 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47435 * 89.99771 * 9 7 5 11 11 H 1.48500 * 109.47341 * 210.00201 * 9 7 5 12 12 H 1.48506 * 109.46758 * 329.99808 * 9 7 5 13 13 N 1.46901 * 109.47537 * 295.00076 * 3 2 1 14 14 C 1.47696 * 111.00159 * 173.57453 * 13 3 2 15 15 C 1.52372 * 87.59556 * 222.18708 * 14 13 3 16 16 C 1.52645 * 121.98005 * 149.99397 * 15 14 13 17 17 C 1.54009 * 86.67947 * 102.61755 * 16 15 14 18 18 O 1.42905 * 113.63777 * 269.88870 * 17 16 15 19 19 C 1.52642 * 121.98182 * 260.47392 * 15 14 13 20 20 C 1.47706 * 110.99813 * 77.22730 * 13 3 2 21 21 H 1.08995 * 109.47078 * 59.99520 * 1 2 3 22 22 H 1.08997 * 109.46271 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47002 * 299.99853 * 1 2 3 24 24 H 1.09006 * 109.46943 * 240.00837 * 2 1 3 25 25 H 1.08991 * 109.47510 * 120.00251 * 2 1 3 26 26 H 0.96996 * 119.99694 * 180.02562 * 8 7 5 27 27 H 1.08994 * 113.53351 * 336.86901 * 14 13 3 28 28 H 1.09007 * 113.53208 * 107.50660 * 14 13 3 29 29 H 1.08997 * 113.68035 * 217.05948 * 16 15 14 30 30 H 1.08998 * 113.68068 * 348.17463 * 16 15 14 31 31 H 1.09001 * 113.57108 * 139.14026 * 17 16 15 32 32 H 0.96703 * 113.99731 * 277.83430 * 18 17 16 33 33 H 1.09003 * 113.67902 * 11.82898 * 19 15 14 34 34 H 1.08995 * 113.68201 * 142.84493 * 19 15 14 35 35 H 1.09003 * 113.52968 * 252.49786 * 20 13 3 36 36 H 1.09005 * 113.53206 * 23.06317 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1504 1.8084 -0.6908 7 6 4.1391 0.9815 1.2770 8 7 5.4499 0.9826 1.3848 9 14 3.0867 0.3513 2.6858 10 1 2.8546 -1.1057 2.5170 11 1 3.7853 0.5954 3.9733 12 1 1.7835 1.0633 2.6870 13 7 1.6513 2.0994 -1.2552 14 6 1.9920 3.5363 -1.2282 15 6 0.6384 3.8036 -1.8749 16 6 -0.1324 5.0984 -1.6313 17 6 0.3532 5.5442 -3.0231 18 8 1.5985 6.2448 -2.9983 19 6 0.4935 4.0513 -3.3741 20 6 0.2259 2.4856 -1.2312 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 5.8701 0.6566 2.1960 27 1 2.0812 3.9436 -0.2212 28 1 2.8376 3.7951 -1.8656 29 1 -1.2116 4.9600 -1.5678 30 1 0.2681 5.6993 -0.8148 31 1 -0.4099 6.0593 -3.6067 32 1 1.5176 7.1830 -2.7784 33 1 1.3923 3.8184 -3.9452 34 1 -0.4075 3.6148 -3.8049 35 1 -0.4034 1.8669 -1.8710 36 1 -0.1775 2.5989 -0.2249 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:11 Heat of formation + Delta-G solvation = 17.386747 kcal Electronic energy + Delta-G solvation = -16389.553254 eV Core-core repulsion = 13876.049471 eV Total energy + Delta-G solvation = -2513.503782 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61002 -37.49692 -34.73595 -32.81321 -31.80079 -28.38340 -25.74823 -25.18273 -24.77504 -22.57818 -20.99634 -19.49752 -18.01751 -16.94908 -16.78791 -15.61942 -14.95378 -14.70534 -14.17889 -13.93945 -13.44984 -12.97487 -12.62496 -12.38936 -12.23893 -12.08927 -11.79022 -11.53867 -11.28726 -10.95542 -10.71774 -10.65505 -10.13339 -9.94749 -9.80956 -9.67029 -9.64170 -9.06777 -8.97316 -8.52382 -7.82316 -6.05128 -4.03648 3.27012 3.36415 3.37778 4.14508 4.40905 4.58731 4.69040 4.79011 4.99709 5.23121 5.26843 5.45859 5.69700 5.76253 5.91483 5.92605 5.96466 6.03804 6.09348 6.17676 6.22064 6.32917 6.43205 6.51309 6.60792 6.63045 6.69072 6.85307 6.89640 7.15098 7.45910 7.72114 7.81884 8.03109 8.64824 9.03783 9.57067 11.07979 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034527 B = 0.008492 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.772352 B = 3296.334757 C = 3752.122441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C 0.154 3.846 4 H 0.006 0.994 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.878 3.122 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.267 1.267 13 N -0.454 5.454 14 C 0.055 3.945 15 C -0.113 4.113 16 C -0.161 4.161 17 C 0.081 3.919 18 O -0.545 6.545 19 C -0.100 4.100 20 C 0.008 3.992 21 H 0.065 0.935 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.263 0.737 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.375 0.625 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 7.482 -5.692 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.156 4.156 3 C 0.045 3.955 4 H 0.023 0.977 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.708 3.292 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.192 1.192 13 N -0.176 5.176 14 C -0.074 4.074 15 C -0.113 4.113 16 C -0.199 4.199 17 C 0.021 3.979 18 O -0.350 6.350 19 C -0.137 4.137 20 C -0.122 4.122 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.522 6.359 -6.222 15.361 hybrid contribution -0.944 0.455 1.916 2.184 sum -13.466 6.814 -4.306 15.694 Atomic orbital electron populations 1.22214 0.98421 1.00257 1.01434 1.21816 0.92954 0.99557 1.01271 1.20286 0.97143 0.91099 0.86956 0.97686 1.20934 0.88735 1.42133 1.02407 0.90194 1.24928 0.94753 0.95385 0.98038 1.69895 1.08680 1.47310 1.27854 0.86946 0.80842 0.79556 0.81864 1.20312 1.22148 1.19160 1.68856 1.03272 1.10572 1.34923 1.23073 0.94971 0.90132 0.99252 1.22504 0.98674 0.93978 0.96159 1.23443 1.00044 0.98122 0.98271 1.22743 0.85668 0.93534 0.95928 1.86551 1.29771 1.25706 1.92935 1.22597 1.02822 0.92670 0.95656 1.23746 0.94885 0.94307 0.99214 0.91607 0.94227 0.94113 0.91580 0.93266 0.92675 0.91671 0.90254 0.89627 0.90988 0.92135 0.77832 0.90118 0.89022 0.90605 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.82 37.16 0.33 -2.71 16 2 C -0.12 -2.66 5.19 -26.73 -0.14 -2.80 16 3 C 0.15 3.73 0.92 -68.86 -0.06 3.67 16 4 H 0.01 0.14 6.25 -51.93 -0.32 -0.18 16 5 C -0.50 -14.51 8.67 -34.44 -0.30 -14.81 16 6 H 0.08 2.54 8.02 -52.49 -0.42 2.12 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 9 Si 0.88 22.21 24.68 -169.99 -4.20 18.02 16 10 H -0.28 -6.83 6.86 56.52 0.39 -6.45 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.27 -6.49 6.39 56.52 0.36 -6.13 16 13 N -0.45 -9.75 6.11 -237.77 -1.45 -11.21 16 14 C 0.05 1.10 6.86 -6.77 -0.05 1.05 16 15 C -0.11 -1.77 1.26 -155.54 -0.20 -1.97 16 16 C -0.16 -2.01 7.73 -26.39 -0.20 -2.21 16 17 C 0.08 0.96 5.26 -25.70 -0.14 0.82 16 18 O -0.55 -7.05 13.61 -35.23 -0.48 -7.53 16 19 C -0.10 -1.37 7.73 -26.39 -0.20 -1.57 16 20 C 0.01 0.13 5.11 -6.76 -0.03 0.09 16 21 H 0.07 1.11 4.62 -51.93 -0.24 0.87 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.73 8.13 -51.93 -0.42 0.30 16 24 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 25 H 0.05 1.17 4.00 -51.93 -0.21 0.96 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.07 1.38 7.83 -51.93 -0.41 0.98 16 28 H 0.08 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.38 3.03 9.12 45.56 0.42 3.45 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.19 6.79 -51.93 -0.35 0.84 16 36 H 0.06 1.05 7.22 -51.93 -0.38 0.68 16 LS Contribution 277.13 15.07 4.18 4.18 Total: -1.00 -32.05 277.13 -7.17 -39.23 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.91 Total: 2.95 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -1.09 Total: -18.46 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.68 Total: -38.38 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.48 Total: -7.53 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.20 Total: 18.02 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.05 -7.17 -39.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.614 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds