Wall clock time and date at job start Mon Mar 30 2020 17:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46793 * 2 1 4 4 H 1.08995 * 109.46955 * 306.65372 * 3 2 1 5 5 C 1.53000 * 109.46699 * 186.65171 * 3 2 1 6 6 C 1.53004 * 109.47169 * 175.13895 * 5 3 2 7 7 C 1.52997 * 109.47203 * 174.13904 * 6 5 3 8 8 C 1.53003 * 109.46707 * 294.13676 * 6 5 3 9 9 N 1.46901 * 109.46895 * 66.65584 * 3 2 1 10 10 C 1.47471 * 111.00456 * 17.28907 * 9 3 2 11 11 C 1.53512 * 87.93460 * 221.29862 * 10 9 3 12 12 C 1.50703 * 114.17285 * 139.67004 * 11 10 9 13 13 H 1.07994 * 119.99812 * 266.15795 * 12 11 10 14 14 C 1.37877 * 119.99711 * 86.15878 * 12 11 10 15 15 N 1.31515 * 120.00074 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99583 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47401 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47133 * 120.00536 * 16 14 12 19 19 H 1.48500 * 109.47011 * 239.99955 * 16 14 12 20 20 C 1.47479 * 110.99703 * 281.31435 * 9 3 2 21 21 H 1.09001 * 109.46885 * 290.18701 * 1 2 3 22 22 H 1.09004 * 109.46934 * 170.19509 * 1 2 3 23 23 H 1.08994 * 109.47158 * 50.19328 * 1 2 3 24 24 H 1.09004 * 109.46864 * 120.00049 * 2 1 3 25 25 H 1.08995 * 109.47026 * 240.00004 * 2 1 3 26 26 H 1.09002 * 109.47449 * 295.13425 * 5 3 2 27 27 H 1.08999 * 109.47356 * 55.13693 * 5 3 2 28 28 H 1.08997 * 109.46859 * 54.13594 * 6 5 3 29 29 H 1.08999 * 109.47173 * 304.92045 * 7 6 5 30 30 H 1.09003 * 109.47106 * 64.92166 * 7 6 5 31 31 H 1.08999 * 109.46983 * 184.92320 * 7 6 5 32 32 H 1.08998 * 109.47071 * 60.00112 * 8 6 5 33 33 H 1.08998 * 109.46945 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47147 * 300.00077 * 8 6 5 35 35 H 1.09001 * 113.47795 * 336.06123 * 10 9 3 36 36 H 1.09001 * 113.47826 * 106.53314 * 10 9 3 37 37 H 1.09000 * 114.34430 * 272.36724 * 11 10 9 38 38 H 0.96997 * 119.99650 * 180.02562 * 15 14 12 39 39 H 1.08995 * 113.47961 * 253.47491 * 20 9 3 40 40 H 1.09003 * 113.47835 * 23.88487 * 20 9 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5826 1.9895 -0.8244 5 6 3.5608 1.4457 -0.1671 6 6 4.0575 2.8878 -0.2887 7 6 5.5873 2.9003 -0.3089 8 6 3.5253 3.5028 -1.5847 9 7 1.6857 2.0871 1.2716 10 6 1.3357 1.0832 2.2936 11 6 0.1872 2.0053 2.7263 12 6 -1.0932 1.2827 3.0573 13 1 -1.8526 1.1555 2.3001 14 6 -1.2950 0.7842 4.3268 15 7 -0.3703 0.9396 5.2490 16 14 -2.8823 -0.1109 4.7373 17 1 -3.7530 -0.1513 3.5350 18 1 -2.5715 -1.4971 5.1696 19 1 -3.5843 0.6038 5.8336 20 6 0.2710 2.5038 1.2768 21 1 -0.3633 0.3546 0.9646 22 1 -0.3633 -1.0127 -0.1750 23 1 -0.3633 0.6579 -0.7894 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 4.0227 0.9744 0.7005 27 1 3.8287 0.8921 -1.0670 28 1 3.7005 3.4680 0.5622 29 1 5.9665 2.3841 0.5730 30 1 5.9430 2.3949 -1.2068 31 1 5.9422 3.9309 -0.3073 32 1 2.4354 3.4939 -1.5703 33 1 3.8787 4.5303 -1.6712 34 1 3.8822 2.9226 -2.4356 35 1 0.9972 0.1359 1.8738 36 1 2.1022 0.9562 3.0581 37 1 0.4658 2.7506 3.4713 38 1 -0.5121 0.5885 6.1420 39 1 0.1353 3.5809 1.1795 40 1 -0.3514 1.9364 0.5848 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172397919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:00 Heat of formation + Delta-G solvation = 33.936899 kcal Electronic energy + Delta-G solvation = -16679.882742 eV Core-core repulsion = 14302.929723 eV Total energy + Delta-G solvation = -2376.953019 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11182 -36.18205 -33.27696 -32.10183 -29.52283 -27.00537 -26.92157 -24.99944 -24.08468 -22.75074 -19.99847 -19.34624 -18.30740 -16.92211 -15.40078 -14.83345 -14.67532 -14.28607 -14.04860 -13.67891 -13.05958 -12.66556 -12.42710 -12.10954 -11.91923 -11.57477 -11.50985 -11.32737 -11.06973 -11.00564 -10.91781 -10.67755 -10.42784 -10.28421 -10.22143 -10.03350 -9.92846 -9.41728 -9.04626 -8.80773 -8.38659 -7.60055 -6.03773 -4.08062 3.27899 3.36684 3.39640 4.40893 4.95589 5.00623 5.21569 5.25388 5.29512 5.47270 5.60042 5.67983 5.77333 5.82349 5.98166 6.00034 6.03824 6.11087 6.13775 6.17702 6.28450 6.30144 6.39818 6.44269 6.48741 6.56639 6.65031 6.67973 6.77747 6.81187 6.97374 7.07103 7.26932 7.37988 7.76484 7.96508 8.23040 8.40829 8.95541 9.56787 11.05566 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043867 B = 0.006829 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.139256 B = 4099.188146 C = 4319.425989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.150 4.150 3 C 0.046 3.954 4 H 0.067 0.933 5 C -0.094 4.094 6 C -0.093 4.093 7 C -0.145 4.145 8 C -0.144 4.144 9 N -0.474 5.474 10 C -0.022 4.022 11 C 0.041 3.959 12 C -0.514 4.514 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.887 3.113 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.026 4.026 21 H 0.112 0.888 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.260 0.740 39 H 0.053 0.947 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 0.625 -10.685 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.188 4.188 3 C -0.063 4.063 4 H 0.086 0.914 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.202 4.202 8 C -0.201 4.201 9 N -0.196 5.196 10 C -0.150 4.150 11 C 0.022 3.978 12 C -0.553 4.553 13 H 0.077 0.923 14 C -0.135 4.135 15 N -0.522 5.522 16 Si 0.715 3.285 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.154 4.154 21 H 0.130 0.870 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.902 1.071 -10.418 12.543 hybrid contribution -1.325 -1.212 -0.017 1.796 sum 5.577 -0.141 -10.435 11.833 Atomic orbital electron populations 1.22579 0.95526 1.00933 1.05223 1.22173 0.96834 0.98161 1.01627 1.22193 0.95407 0.93439 0.95277 0.91449 1.21511 0.95155 0.96073 1.00490 1.21027 0.94288 0.97064 0.98747 1.21844 0.96306 1.00964 1.01120 1.21848 1.01218 0.99819 0.97220 1.68989 1.20517 1.25656 1.04419 1.24630 0.99668 0.96988 0.93764 1.20063 0.93374 0.94143 0.90204 1.21055 1.02120 1.35865 0.96211 0.92342 1.25008 0.96242 0.95924 0.96340 1.69984 1.33445 1.45374 1.03396 0.86624 0.83904 0.79530 0.78492 1.19693 1.21036 1.20966 1.24444 0.89536 0.99518 1.01917 0.86978 0.93711 0.93578 0.90506 0.93080 0.92197 0.93044 0.89594 0.92914 0.93473 0.93275 0.92581 0.93423 0.93569 0.89611 0.92574 0.92281 0.92984 0.92825 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 7.77 37.16 0.29 -2.94 16 2 C -0.15 -2.46 4.86 -26.73 -0.13 -2.59 16 3 C 0.05 0.77 1.99 -67.71 -0.13 0.64 16 4 H 0.07 1.11 6.15 -51.93 -0.32 0.79 16 5 C -0.09 -1.40 4.35 -26.73 -0.12 -1.51 16 6 C -0.09 -1.29 2.86 -90.62 -0.26 -1.55 16 7 C -0.14 -1.74 9.19 37.16 0.34 -1.39 16 8 C -0.14 -1.80 8.97 37.16 0.33 -1.47 16 9 N -0.47 -9.40 5.68 -236.61 -1.35 -10.74 16 10 C -0.02 -0.50 6.28 -7.55 -0.05 -0.54 16 11 C 0.04 1.02 3.73 -91.24 -0.34 0.68 16 12 C -0.51 -13.62 7.58 -34.44 -0.26 -13.88 16 13 H 0.06 1.52 7.50 -52.49 -0.39 1.13 16 14 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 15 N -0.88 -25.37 13.26 55.43 0.74 -24.64 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.03 -0.54 6.79 -7.55 -0.05 -0.59 16 21 H 0.11 2.29 2.65 -51.93 -0.14 2.15 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.74 7.49 -51.93 -0.39 0.35 16 24 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.39 7.59 -51.93 -0.39 1.00 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.75 6.49 -51.93 -0.34 0.41 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.89 3.23 -51.93 -0.17 1.72 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.64 8.11 -51.93 -0.42 1.21 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.47 4.28 -51.93 -0.22 1.25 16 LS Contribution 296.97 15.07 4.48 4.48 Total: -1.00 -26.92 296.97 -8.51 -35.43 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.88 Total: 3.09 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -0.47 Total: -23.41 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.61 Total: -35.38 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.92 -8.51 -35.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172397919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.363 kcal (2) G-P(sol) polarization free energy of solvation -26.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds