Wall clock time and date at job start Mon Mar 30 2020 17:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46793 * 2 1 4 4 H 1.08995 * 109.46955 * 306.65372 * 3 2 1 5 5 C 1.53000 * 109.46699 * 186.65171 * 3 2 1 6 6 C 1.53004 * 109.47169 * 175.13895 * 5 3 2 7 7 C 1.52997 * 109.47203 * 174.13904 * 6 5 3 8 8 C 1.53003 * 109.46707 * 294.13676 * 6 5 3 9 9 N 1.46901 * 109.46895 * 66.65584 * 3 2 1 10 10 C 1.47471 * 111.00456 * 17.28907 * 9 3 2 11 11 C 1.53512 * 87.93460 * 221.29862 * 10 9 3 12 12 C 1.50703 * 114.17285 * 139.67004 * 11 10 9 13 13 H 1.07994 * 119.99812 * 266.15795 * 12 11 10 14 14 C 1.37877 * 119.99711 * 86.15878 * 12 11 10 15 15 N 1.31515 * 120.00074 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99583 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47401 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47133 * 120.00536 * 16 14 12 19 19 H 1.48500 * 109.47011 * 239.99955 * 16 14 12 20 20 C 1.47479 * 110.99703 * 281.31435 * 9 3 2 21 21 H 1.09001 * 109.46885 * 290.18701 * 1 2 3 22 22 H 1.09004 * 109.46934 * 170.19509 * 1 2 3 23 23 H 1.08994 * 109.47158 * 50.19328 * 1 2 3 24 24 H 1.09004 * 109.46864 * 120.00049 * 2 1 3 25 25 H 1.08995 * 109.47026 * 240.00004 * 2 1 3 26 26 H 1.09002 * 109.47449 * 295.13425 * 5 3 2 27 27 H 1.08999 * 109.47356 * 55.13693 * 5 3 2 28 28 H 1.08997 * 109.46859 * 54.13594 * 6 5 3 29 29 H 1.08999 * 109.47173 * 304.92045 * 7 6 5 30 30 H 1.09003 * 109.47106 * 64.92166 * 7 6 5 31 31 H 1.08999 * 109.46983 * 184.92320 * 7 6 5 32 32 H 1.08998 * 109.47071 * 60.00112 * 8 6 5 33 33 H 1.08998 * 109.46945 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47147 * 300.00077 * 8 6 5 35 35 H 1.09001 * 113.47795 * 336.06123 * 10 9 3 36 36 H 1.09001 * 113.47826 * 106.53314 * 10 9 3 37 37 H 1.09000 * 114.34430 * 272.36724 * 11 10 9 38 38 H 0.96997 * 119.99650 * 180.02562 * 15 14 12 39 39 H 1.08995 * 113.47961 * 253.47491 * 20 9 3 40 40 H 1.09003 * 113.47835 * 23.88487 * 20 9 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5826 1.9895 -0.8244 5 6 3.5608 1.4457 -0.1671 6 6 4.0575 2.8878 -0.2887 7 6 5.5873 2.9003 -0.3089 8 6 3.5253 3.5028 -1.5847 9 7 1.6857 2.0871 1.2716 10 6 1.3357 1.0832 2.2936 11 6 0.1872 2.0053 2.7263 12 6 -1.0932 1.2827 3.0573 13 1 -1.8526 1.1555 2.3001 14 6 -1.2950 0.7842 4.3268 15 7 -0.3703 0.9396 5.2490 16 14 -2.8823 -0.1109 4.7373 17 1 -3.7530 -0.1513 3.5350 18 1 -2.5715 -1.4971 5.1696 19 1 -3.5843 0.6038 5.8336 20 6 0.2710 2.5038 1.2768 21 1 -0.3633 0.3546 0.9646 22 1 -0.3633 -1.0127 -0.1750 23 1 -0.3633 0.6579 -0.7894 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 4.0227 0.9744 0.7005 27 1 3.8287 0.8921 -1.0670 28 1 3.7005 3.4680 0.5622 29 1 5.9665 2.3841 0.5730 30 1 5.9430 2.3949 -1.2068 31 1 5.9422 3.9309 -0.3073 32 1 2.4354 3.4939 -1.5703 33 1 3.8787 4.5303 -1.6712 34 1 3.8822 2.9226 -2.4356 35 1 0.9972 0.1359 1.8738 36 1 2.1022 0.9562 3.0581 37 1 0.4658 2.7506 3.4713 38 1 -0.5121 0.5885 6.1420 39 1 0.1353 3.5809 1.1795 40 1 -0.3514 1.9364 0.5848 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172397919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:00 Heat of formation + Delta-G solvation = 18.352257 kcal Electronic energy + Delta-G solvation = -16680.558543 eV Core-core repulsion = 14302.929723 eV Total energy + Delta-G solvation = -2377.628820 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73875 -37.41582 -34.95764 -33.86431 -30.96978 -28.64373 -27.97453 -26.73796 -25.79322 -24.19977 -21.42153 -20.67622 -19.98470 -18.78705 -16.98577 -16.52255 -16.39097 -15.78151 -15.34342 -14.96605 -14.45389 -14.37020 -13.75668 -13.46316 -13.10958 -13.02109 -12.92703 -12.83325 -12.72849 -12.59558 -12.38818 -12.25005 -11.96999 -11.76449 -11.54139 -11.35785 -11.25117 -10.99560 -10.94764 -10.67091 -10.42190 -9.24053 -8.11456 -6.21792 1.42050 1.44442 1.55420 2.44145 3.17862 3.44022 3.74443 4.07622 4.13754 4.24703 4.33922 4.41540 4.45915 4.52131 4.63611 4.73856 4.78003 4.84675 4.87103 4.92196 4.98309 4.98882 5.03042 5.11395 5.13702 5.15948 5.20706 5.32403 5.35053 5.44863 5.56090 5.61494 5.67393 5.72311 5.78306 5.91654 6.35088 6.57832 6.88211 7.46203 8.98515 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043867 B = 0.006829 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.139256 B = 4099.188146 C = 4319.425989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.146 4.146 3 C 0.045 3.955 4 H 0.079 0.921 5 C -0.090 4.090 6 C -0.094 4.094 7 C -0.141 4.141 8 C -0.139 4.139 9 N -0.473 5.473 10 C -0.008 4.008 11 C 0.022 3.978 12 C -0.517 4.517 13 H 0.063 0.937 14 C 0.014 3.986 15 N -0.925 5.925 16 Si 0.953 3.047 17 H -0.261 1.261 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.011 4.011 21 H 0.079 0.921 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.028 0.972 37 H 0.017 0.983 38 H 0.260 0.740 39 H 0.057 0.943 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.200 -0.036 -13.090 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.184 4.184 3 C -0.064 4.064 4 H 0.097 0.903 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.198 4.198 8 C -0.197 4.197 9 N -0.195 5.195 10 C -0.137 4.137 11 C 0.003 3.997 12 C -0.555 4.555 13 H 0.081 0.919 14 C -0.185 4.185 15 N -0.564 5.564 16 Si 0.779 3.221 17 H -0.185 1.185 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.139 4.139 21 H 0.097 0.903 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.810 0.416 -12.842 14.542 hybrid contribution -1.256 -0.967 0.690 1.728 sum 5.554 -0.550 -12.153 13.373 Atomic orbital electron populations 1.22496 0.96052 1.01921 1.03734 1.22122 0.96299 0.97810 1.02199 1.22315 0.96971 0.93603 0.93509 0.90315 1.21499 0.93438 0.96953 1.00932 1.20992 0.95704 0.96063 0.98467 1.21798 0.94715 1.01696 1.01621 1.21804 1.00476 1.00559 0.96824 1.68926 1.19728 1.25093 1.05796 1.24408 0.97731 0.97535 0.94000 1.19988 0.93907 0.94250 0.91551 1.21345 1.02632 1.35219 0.96349 0.91882 1.25811 0.99409 0.96945 0.96358 1.70121 1.35568 1.46926 1.03784 0.85577 0.80027 0.78118 0.78393 1.18493 1.20784 1.20949 1.24290 0.90420 0.99834 0.99352 0.90253 0.92443 0.92205 0.92201 0.90121 0.93761 0.90549 0.92629 0.93599 0.91804 0.92478 0.93606 0.92606 0.91841 0.88715 0.95335 0.96454 0.93065 0.92464 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.00 7.77 71.98 0.56 -5.44 16 2 C -0.15 -4.47 4.86 30.60 0.15 -4.32 16 3 C 0.04 1.42 1.99 44.92 0.09 1.51 16 4 H 0.08 2.36 6.15 -2.39 -0.01 2.35 16 5 C -0.09 -2.49 4.35 30.60 0.13 -2.36 16 6 C -0.09 -2.44 2.86 -10.79 -0.03 -2.47 16 7 C -0.14 -3.08 9.19 71.98 0.66 -2.42 16 8 C -0.14 -3.12 8.97 71.98 0.65 -2.47 16 9 N -0.47 -18.79 5.68 -902.51 -5.13 -23.92 16 10 C -0.01 -0.37 6.28 83.57 0.52 0.15 16 11 C 0.02 1.13 3.73 -11.19 -0.04 1.09 16 12 C -0.52 -27.77 7.58 25.60 0.19 -27.58 16 13 H 0.06 3.26 7.50 -2.91 -0.02 3.24 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.92 -54.72 13.26 21.45 0.28 -54.44 16 16 Si 0.95 43.03 29.54 68.60 2.03 45.05 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 C -0.01 -0.44 6.79 83.57 0.57 0.13 16 21 H 0.08 3.14 2.65 -2.39 -0.01 3.13 16 22 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.06 1.75 7.49 -2.39 -0.02 1.73 16 24 H 0.06 2.05 5.97 -2.39 -0.01 2.03 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.79 7.59 -2.39 -0.02 1.77 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 1.11 6.49 -2.39 -0.02 1.09 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 4.21 3.23 -2.39 -0.01 4.20 16 36 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.02 1.01 8.11 -2.39 -0.02 0.99 16 38 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.09 3.40 4.28 -2.39 -0.01 3.39 16 Total: -1.00 -58.78 296.97 2.08 -56.69 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.99 Total: 19.57 kcal Atomic # 6 Polarization: -46.87 SS G_CDS: 3.91 Total: -42.96 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -4.85 Total: -78.36 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -58.78 2.08 -56.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172397919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.046 kcal (2) G-P(sol) polarization free energy of solvation -58.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds