Wall clock time and date at job start Mon Mar 30 2020 17:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.47050 * 2 1 4 4 C 1.52992 * 109.46965 * 239.99623 * 2 1 3 5 5 C 1.52997 * 109.47326 * 175.00085 * 4 2 1 6 6 C 1.50697 * 109.47496 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00099 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00043 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00072 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99632 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47630 * 60.00230 * 10 8 6 12 12 H 1.48512 * 109.46749 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47330 * 299.99883 * 10 8 6 14 14 N 1.46904 * 109.47051 * 119.99915 * 2 1 3 15 15 C 1.46901 * 110.99830 * 251.07473 * 14 2 1 16 16 C 1.53003 * 109.46872 * 175.63646 * 15 14 2 17 17 C 1.52993 * 109.47134 * 295.63880 * 15 14 2 18 18 C 1.53001 * 109.46972 * 55.64122 * 15 14 2 19 19 C 1.53005 * 117.49682 * 244.20669 * 18 15 14 20 20 C 1.53004 * 117.49655 * 175.58565 * 18 15 14 21 21 H 1.09000 * 109.47324 * 182.30006 * 1 2 3 22 22 H 1.09005 * 109.46940 * 302.30011 * 1 2 3 23 23 H 1.08998 * 109.47095 * 62.29830 * 1 2 3 24 24 H 1.09004 * 109.47319 * 54.99975 * 4 2 1 25 25 H 1.09000 * 109.47731 * 295.00315 * 4 2 1 26 26 H 1.09004 * 109.47012 * 59.99701 * 5 4 2 27 27 H 1.08995 * 109.47275 * 300.00483 * 5 4 2 28 28 H 0.96991 * 120.00291 * 179.97438 * 9 8 6 29 29 H 1.00897 * 110.99823 * 127.11636 * 14 2 1 30 30 H 1.09005 * 109.46901 * 54.76934 * 16 15 14 31 31 H 1.08999 * 109.46591 * 174.76350 * 16 15 14 32 32 H 1.08991 * 109.47444 * 294.76525 * 16 15 14 33 33 H 1.09007 * 109.47193 * 61.58093 * 17 15 14 34 34 H 1.09001 * 109.47188 * 181.57987 * 17 15 14 35 35 H 1.08995 * 109.47330 * 301.58242 * 17 15 14 36 36 H 1.08994 * 115.55308 * 29.91498 * 18 15 14 37 37 H 1.08997 * 117.49802 * 0.02562 * 19 18 15 38 38 H 1.08996 * 117.49904 * 145.02468 * 19 18 15 39 39 H 1.08996 * 117.50103 * 214.97368 * 20 18 15 40 40 H 1.09000 * 117.49861 * 0.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3137 6 6 4.0672 -1.3244 -2.5437 7 1 3.3688 -1.8049 -3.2128 8 6 5.4185 -1.3607 -2.8155 9 7 6.2690 -0.7753 -2.0010 10 14 6.0410 -2.2415 -4.3406 11 1 5.4486 -1.6159 -5.5501 12 1 7.5212 -2.1368 -4.4031 13 1 5.6486 -3.6724 -4.2808 14 7 2.0197 -0.6925 1.1995 15 6 2.6146 0.2570 2.1495 16 6 3.0132 -0.4830 3.4280 17 6 3.8550 0.8964 1.5225 18 6 1.5949 1.3464 2.4877 19 6 1.9286 2.7803 2.0708 20 6 1.9889 2.3788 3.5460 21 1 -0.3634 -1.0268 0.0412 22 1 -0.3633 0.5492 0.8687 23 1 -0.3633 0.4777 -0.9099 24 1 1.6054 -0.2619 -2.1369 25 1 1.7516 -1.7716 -1.2055 26 1 3.9994 -1.0729 -0.4259 27 1 3.8532 0.4368 -1.3573 28 1 7.2196 -0.8011 -2.1919 29 1 2.6762 -1.4187 0.9551 30 1 3.6672 -1.3177 3.1758 31 1 3.5379 0.2010 4.0950 32 1 2.1186 -0.8593 3.9240 33 1 3.5667 1.4470 0.6269 34 1 4.3124 1.5799 2.2377 35 1 4.5697 0.1178 1.2558 36 1 0.5495 1.0407 2.4476 37 1 2.8743 2.9473 1.5552 38 1 1.1026 3.4180 1.7562 39 1 1.2026 2.7526 4.2018 40 1 2.9747 2.2821 4.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:04 Heat of formation + Delta-G solvation = 3.150777 kcal Electronic energy + Delta-G solvation = -16599.416062 eV Core-core repulsion = 14221.128057 eV Total energy + Delta-G solvation = -2378.288006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36422 -35.97516 -33.30514 -32.38123 -29.60944 -27.84134 -27.01835 -25.04760 -23.10547 -22.05442 -21.41197 -19.65283 -18.15232 -16.36130 -16.15002 -15.07858 -14.56765 -14.43688 -13.82376 -13.32264 -13.00617 -12.66964 -12.45120 -12.27527 -12.03119 -11.73454 -11.56011 -11.21369 -11.16762 -11.03438 -10.87519 -10.78448 -10.52313 -10.36574 -10.23438 -9.94100 -9.78600 -9.57848 -9.24387 -8.99702 -8.34047 -7.81012 -6.00122 -4.01961 3.33009 3.37340 3.40134 3.98892 4.46041 4.57316 4.90744 5.11952 5.22153 5.35285 5.46951 5.55578 5.63551 5.67528 5.75551 5.89088 5.96279 6.00811 6.03398 6.14030 6.23326 6.26787 6.28919 6.34513 6.40422 6.49266 6.54716 6.64310 6.68446 6.85913 6.96527 7.14255 7.65832 7.66175 7.85429 7.97979 8.05772 8.43983 9.04579 9.62034 11.10684 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034858 B = 0.006916 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.065061 B = 4047.829641 C = 4381.231029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.080 3.920 3 H 0.058 0.942 4 C -0.126 4.126 5 C 0.024 3.976 6 C -0.521 4.521 7 H 0.053 0.947 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.675 5.675 15 C 0.140 3.860 16 C -0.132 4.132 17 C -0.180 4.180 18 C -0.129 4.129 19 C -0.189 4.189 20 C -0.181 4.181 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.349 0.651 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.963 4.322 9.563 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 H 0.076 0.924 4 C -0.165 4.165 5 C -0.013 4.013 6 C -0.560 4.560 7 H 0.071 0.929 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.308 5.308 15 C 0.049 3.951 16 C -0.190 4.190 17 C -0.239 4.239 18 C -0.147 4.147 19 C -0.226 4.226 20 C -0.219 4.219 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.170 0.830 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.384 4.336 9.892 13.673 hybrid contribution 1.317 -0.196 -1.373 1.913 sum -7.067 4.140 8.520 11.818 Atomic orbital electron populations 1.21860 0.96206 1.01228 0.99910 1.21611 0.94175 0.97557 0.89633 0.92396 1.22048 0.99917 0.99189 0.95300 1.19159 0.88605 0.96784 0.96752 1.21244 0.91913 1.34303 1.08499 0.92885 1.25004 0.97082 0.95612 0.96620 1.69941 1.02341 1.44072 1.37029 0.86690 0.77566 0.80280 0.83648 1.20320 1.21344 1.20271 1.60767 1.42535 1.13302 1.14228 1.20387 0.91151 0.90829 0.92748 1.21747 1.01031 0.99874 0.96355 1.22730 0.98441 1.01877 1.00835 1.22342 1.00098 0.89518 1.02791 1.23168 1.03534 0.98306 0.97570 1.22916 1.02513 1.04459 0.91999 0.92924 0.93536 0.93553 0.92997 0.92918 0.96574 0.96900 0.93051 0.82971 0.92649 0.92773 0.92334 0.91605 0.93396 0.91323 0.87414 0.88111 0.89478 0.89402 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.42 37.16 0.35 -1.67 16 2 C 0.08 1.38 1.75 -67.71 -0.12 1.27 16 3 H 0.06 1.05 5.06 -51.93 -0.26 0.79 16 4 C -0.13 -2.61 4.53 -26.74 -0.12 -2.73 16 5 C 0.02 0.60 3.91 -27.89 -0.11 0.49 16 6 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 N -0.68 -11.28 5.91 -93.04 -0.55 -11.83 16 15 C 0.14 2.12 0.80 -131.60 -0.10 2.01 16 16 C -0.13 -1.80 8.47 37.16 0.31 -1.49 16 17 C -0.18 -3.05 5.99 37.15 0.22 -2.83 16 18 C -0.13 -1.74 4.01 -90.61 -0.36 -2.11 16 19 C -0.19 -2.43 8.99 -26.73 -0.24 -2.67 16 20 C -0.18 -2.12 9.45 -26.73 -0.25 -2.37 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.65 6.20 -51.93 -0.32 0.33 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.02 0.42 5.73 -51.93 -0.30 0.12 16 27 H 0.01 0.34 7.60 -51.93 -0.39 -0.05 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.35 6.45 6.73 -39.29 -0.26 6.19 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.67 7.23 -51.93 -0.38 0.29 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.21 4.75 -51.92 -0.25 0.97 16 34 H 0.05 0.73 7.29 -51.93 -0.38 0.35 16 35 H 0.07 1.34 7.25 -51.93 -0.38 0.97 16 36 H 0.11 1.50 6.35 -51.93 -0.33 1.17 16 37 H 0.10 1.40 5.81 -51.93 -0.30 1.10 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.05 7.15 -51.93 -0.37 0.68 16 LS Contribution 300.28 15.07 4.53 4.53 Total: -1.00 -28.35 300.28 -7.99 -36.34 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.84 Total: 5.59 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -0.83 Total: -25.55 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.19 Total: -37.60 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.35 -7.99 -36.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.493 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds