Wall clock time and date at job start Mon Mar 30 2020 17:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 C 1.50696 * 109.46948 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99762 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00423 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47026 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47007 * 120.00506 * 10 8 6 13 13 H 1.48499 * 109.47172 * 240.00458 * 10 8 6 14 14 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 15 15 C 1.46911 * 110.99614 * 85.00357 * 14 2 1 16 16 C 1.53783 * 113.61014 * 252.49714 * 15 14 2 17 17 C 1.53778 * 87.07885 * 220.01794 * 16 15 14 18 18 C 1.52996 * 113.61583 * 270.88760 * 17 16 15 19 19 C 1.53001 * 113.69120 * 139.99078 * 17 16 15 20 20 C 1.53779 * 113.61413 * 155.00162 * 15 14 2 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 25 25 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 26 26 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 27 27 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 28 28 H 0.96998 * 120.00250 * 179.97438 * 9 8 6 29 29 H 1.00896 * 111.00679 * 321.05250 * 14 2 1 30 30 H 1.09000 * 112.84928 * 23.80303 * 15 14 2 31 31 H 1.09001 * 113.61510 * 334.56539 * 16 15 14 32 32 H 1.08997 * 113.61292 * 105.47601 * 16 15 14 33 33 H 1.09008 * 109.47194 * 157.50009 * 18 17 16 34 34 H 1.09001 * 109.47219 * 277.49436 * 18 17 16 35 35 H 1.09001 * 109.47345 * 37.49528 * 18 17 16 36 36 H 1.08997 * 109.47564 * 322.46814 * 19 17 16 37 37 H 1.08999 * 109.47042 * 82.46787 * 19 17 16 38 38 H 1.08999 * 109.47473 * 202.46460 * 19 17 16 39 39 H 1.09002 * 113.61527 * 254.53350 * 20 15 14 40 40 H 1.09000 * 113.61595 * 25.42894 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3687 -1.8037 3.2135 8 6 5.4184 -1.3603 2.8158 9 7 6.2690 -0.7756 2.0007 10 14 6.0411 -2.2409 4.3410 11 1 4.8911 -2.8124 5.0867 12 1 6.9629 -3.3338 3.9399 13 1 6.7643 -1.2768 5.2086 14 7 2.0196 -0.6926 -1.1994 15 6 2.0825 0.2226 -2.3469 16 6 0.9910 -0.0336 -3.3995 17 6 2.0662 0.2356 -4.4655 18 6 2.1791 1.7085 -4.8637 19 6 1.9838 -0.7015 -5.6721 20 6 3.1031 -0.2001 -3.4168 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6055 -0.2618 2.1370 25 1 1.7516 -1.7716 1.2057 26 1 3.9994 -1.0729 0.4260 27 1 3.8532 0.4370 1.3573 28 1 7.2197 -0.8013 2.1918 29 1 1.4496 -1.4980 -1.4101 30 1 2.1683 1.2679 -2.0504 31 1 0.6196 -1.0584 -3.4030 32 1 0.1917 0.7073 -3.3888 33 1 3.1667 1.8963 -5.2852 34 1 1.4166 1.9436 -5.6063 35 1 2.0345 2.3350 -3.9836 36 1 1.7075 -1.7014 -5.3375 37 1 1.2323 -0.3311 -6.3692 38 1 2.9531 -0.7398 -6.1693 39 1 4.0088 0.4063 -3.4199 40 1 3.3091 -1.2705 -3.4249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:18 Heat of formation + Delta-G solvation = -10.453664 kcal Electronic energy + Delta-G solvation = -15901.007311 eV Core-core repulsion = 13522.129372 eV Total energy + Delta-G solvation = -2378.877939 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75760 -36.32558 -33.04821 -31.36748 -29.33686 -27.81684 -27.43841 -25.56001 -24.93182 -21.57937 -21.02201 -19.81210 -18.06598 -16.07049 -15.65220 -15.16797 -14.38531 -14.28471 -14.10157 -13.58873 -13.10374 -12.78757 -12.65864 -12.43700 -12.28783 -12.02728 -11.81942 -11.54898 -11.46625 -11.16840 -11.10644 -10.86892 -10.61110 -10.38876 -10.34873 -9.99095 -9.71347 -9.56415 -9.14236 -8.82898 -8.19293 -7.74665 -5.84671 -3.85632 3.38620 3.45726 3.50008 4.49691 4.57324 4.59516 4.68443 4.90446 5.14949 5.29328 5.39801 5.50721 5.53089 5.59443 5.61589 5.67668 5.75676 5.79677 5.82116 5.92141 5.97306 6.01313 6.12432 6.16792 6.31058 6.33560 6.46382 6.50306 6.56926 6.77331 6.95276 7.37818 7.65081 7.89483 7.92349 8.13295 8.28898 8.62334 9.23958 9.76822 11.26476 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035024 B = 0.005483 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.270542 B = 5105.085712 C = 5599.845208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.660 5.660 15 C 0.074 3.926 16 C -0.160 4.160 17 C -0.093 4.093 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.119 4.119 21 H 0.044 0.956 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.006 0.994 28 H 0.257 0.743 29 H 0.336 0.664 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.756 2.799 -13.099 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.026 4.026 3 H 0.088 0.912 4 C -0.137 4.137 5 C -0.008 4.008 6 C -0.555 4.555 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.288 5.288 15 C -0.037 4.037 16 C -0.199 4.199 17 C -0.093 4.093 18 C -0.184 4.184 19 C -0.189 4.189 20 C -0.157 4.157 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.155 0.845 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.901 2.903 -12.926 16.539 hybrid contribution -0.528 -0.376 0.638 0.910 sum -10.428 2.527 -12.288 16.313 Atomic orbital electron populations 1.22569 0.98687 1.01392 1.01144 1.21800 0.90869 0.98173 0.91753 0.91185 1.21638 1.00597 0.98327 0.93154 1.18998 0.88338 0.96450 0.97001 1.21403 0.91847 1.33856 1.08425 0.93093 1.25001 0.97149 0.95825 0.96493 1.69996 1.02072 1.44543 1.36901 0.86634 0.78812 0.79537 0.83575 1.19890 1.21144 1.21194 1.60428 1.57026 1.08553 1.02838 1.22985 0.95032 0.96740 0.88943 1.23851 0.97084 1.01324 0.97624 1.21693 0.98006 0.95537 0.94088 1.21584 1.01537 0.94182 1.01105 1.21695 1.01305 0.98772 0.97175 1.23179 0.96903 1.01910 0.93741 0.93683 0.92508 0.92938 0.93667 0.93577 0.94882 0.97550 0.93343 0.84520 0.89121 0.90257 0.92200 0.92385 0.92871 0.92464 0.92655 0.93154 0.92683 0.91517 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 9.16 37.16 0.34 -2.14 16 2 C 0.08 1.44 2.58 -67.71 -0.17 1.27 16 3 H 0.07 1.26 7.46 -51.93 -0.39 0.88 16 4 C -0.10 -2.11 4.83 -26.73 -0.13 -2.24 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -27.89 13.29 55.43 0.74 -27.16 16 10 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 N -0.66 -10.87 5.82 -98.88 -0.58 -11.45 16 15 C 0.07 1.04 3.65 -66.89 -0.24 0.80 16 16 C -0.16 -1.83 6.81 -25.92 -0.18 -2.01 16 17 C -0.09 -1.03 1.39 -153.70 -0.21 -1.24 16 18 C -0.13 -1.28 9.07 37.16 0.34 -0.94 16 19 C -0.13 -1.31 9.19 37.16 0.34 -0.96 16 20 C -0.12 -1.63 7.03 -25.92 -0.18 -1.81 16 21 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.34 5.06 7.93 -39.29 -0.31 4.75 16 30 H 0.09 1.33 6.99 -51.93 -0.36 0.96 16 31 H 0.08 0.89 7.65 -51.93 -0.40 0.49 16 32 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.59 7.34 -51.93 -0.38 0.21 16 36 H 0.05 0.54 7.95 -51.93 -0.41 0.13 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.96 8.10 -51.93 -0.42 0.53 16 40 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 LS Contribution 317.88 15.07 4.79 4.79 Total: -1.00 -30.75 317.88 -8.40 -39.15 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.68 Total: -0.05 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -0.65 Total: -22.61 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.16 Total: -38.60 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.75 -8.40 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.700 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds