Wall clock time and date at job start Mon Mar 30 2020 17:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 C 1.50696 * 109.46948 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99762 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00423 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47026 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47007 * 120.00506 * 10 8 6 13 13 H 1.48499 * 109.47172 * 240.00458 * 10 8 6 14 14 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 15 15 C 1.46911 * 110.99614 * 85.00357 * 14 2 1 16 16 C 1.53783 * 113.61014 * 252.49714 * 15 14 2 17 17 C 1.53778 * 87.07885 * 220.01794 * 16 15 14 18 18 C 1.52996 * 113.61583 * 270.88760 * 17 16 15 19 19 C 1.53001 * 113.69120 * 139.99078 * 17 16 15 20 20 C 1.53779 * 113.61413 * 155.00162 * 15 14 2 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 25 25 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 26 26 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 27 27 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 28 28 H 0.96998 * 120.00250 * 179.97438 * 9 8 6 29 29 H 1.00896 * 111.00679 * 321.05250 * 14 2 1 30 30 H 1.09000 * 112.84928 * 23.80303 * 15 14 2 31 31 H 1.09001 * 113.61510 * 334.56539 * 16 15 14 32 32 H 1.08997 * 113.61292 * 105.47601 * 16 15 14 33 33 H 1.09008 * 109.47194 * 157.50009 * 18 17 16 34 34 H 1.09001 * 109.47219 * 277.49436 * 18 17 16 35 35 H 1.09001 * 109.47345 * 37.49528 * 18 17 16 36 36 H 1.08997 * 109.47564 * 322.46814 * 19 17 16 37 37 H 1.08999 * 109.47042 * 82.46787 * 19 17 16 38 38 H 1.08999 * 109.47473 * 202.46460 * 19 17 16 39 39 H 1.09002 * 113.61527 * 254.53350 * 20 15 14 40 40 H 1.09000 * 113.61595 * 25.42894 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3687 -1.8037 3.2135 8 6 5.4184 -1.3603 2.8158 9 7 6.2690 -0.7756 2.0007 10 14 6.0411 -2.2409 4.3410 11 1 4.8911 -2.8124 5.0867 12 1 6.9629 -3.3338 3.9399 13 1 6.7643 -1.2768 5.2086 14 7 2.0196 -0.6926 -1.1994 15 6 2.0825 0.2226 -2.3469 16 6 0.9910 -0.0336 -3.3995 17 6 2.0662 0.2356 -4.4655 18 6 2.1791 1.7085 -4.8637 19 6 1.9838 -0.7015 -5.6721 20 6 3.1031 -0.2001 -3.4168 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6055 -0.2618 2.1370 25 1 1.7516 -1.7716 1.2057 26 1 3.9994 -1.0729 0.4260 27 1 3.8532 0.4370 1.3573 28 1 7.2197 -0.8013 2.1918 29 1 1.4496 -1.4980 -1.4101 30 1 2.1683 1.2679 -2.0504 31 1 0.6196 -1.0584 -3.4030 32 1 0.1917 0.7073 -3.3888 33 1 3.1667 1.8963 -5.2852 34 1 1.4166 1.9436 -5.6063 35 1 2.0345 2.3350 -3.9836 36 1 1.7075 -1.7014 -5.3375 37 1 1.2323 -0.3311 -6.3692 38 1 2.9531 -0.7398 -6.1693 39 1 4.0088 0.4063 -3.4199 40 1 3.3091 -1.2705 -3.4249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:18 Heat of formation + Delta-G solvation = -28.530940 kcal Electronic energy + Delta-G solvation = -15901.791200 eV Core-core repulsion = 13522.129372 eV Total energy + Delta-G solvation = -2379.661828 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80344 -37.73972 -35.14151 -32.85973 -30.97113 -28.92830 -28.25044 -27.01084 -26.50172 -23.31743 -22.24879 -21.42371 -19.05745 -18.35439 -16.87363 -16.56473 -16.21263 -15.40678 -15.18151 -14.73299 -14.61389 -14.13028 -14.03695 -13.65489 -13.60581 -13.35616 -13.11863 -12.86812 -12.74005 -12.68269 -12.43645 -12.34784 -12.18221 -11.93059 -11.59774 -11.49147 -11.23399 -11.03893 -10.91801 -10.72267 -10.48862 -9.00873 -8.13614 -6.24430 1.39648 1.40508 1.53707 2.43869 3.18501 3.35097 3.61537 3.70532 3.92510 4.05984 4.10923 4.38076 4.41586 4.44802 4.59769 4.77548 4.78888 4.79723 4.89693 4.93168 4.97192 5.01151 5.05421 5.08193 5.09860 5.18028 5.26295 5.28536 5.30438 5.47729 5.55843 5.59978 5.61962 5.90284 6.03782 6.34660 6.40165 6.71754 6.95981 7.43898 8.98066 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035024 B = 0.005483 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.270542 B = 5105.085712 C = 5599.845208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 H 0.055 0.945 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.542 4.542 7 H 0.055 0.945 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.278 1.278 14 N -0.682 5.682 15 C 0.067 3.933 16 C -0.143 4.143 17 C -0.082 4.082 18 C -0.127 4.127 19 C -0.131 4.131 20 C -0.129 4.129 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.003 0.997 27 H -0.026 1.026 28 H 0.261 0.739 29 H 0.343 0.657 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.333 2.333 -13.303 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 H 0.074 0.926 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.312 5.312 15 C -0.044 4.044 16 C -0.182 4.182 17 C -0.082 4.082 18 C -0.184 4.184 19 C -0.188 4.188 20 C -0.167 4.167 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.021 0.979 27 H -0.008 1.008 28 H 0.070 0.930 29 H 0.163 0.837 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.497 2.438 -13.139 17.628 hybrid contribution 0.030 -0.214 0.685 0.719 sum -11.467 2.224 -12.453 17.074 Atomic orbital electron populations 1.22402 0.95321 1.02386 1.02350 1.21562 0.93392 0.96589 0.90326 0.92644 1.21477 0.96480 0.99080 0.95700 1.18821 0.92288 0.93697 0.95036 1.21854 0.92542 1.34271 1.09351 0.92625 1.25979 0.97390 0.96519 1.00068 1.70141 1.02550 1.45786 1.39049 0.85438 0.78407 0.78282 0.79138 1.18597 1.20428 1.20381 1.60323 1.57854 1.09530 1.03490 1.23021 0.96901 0.95782 0.88660 1.23717 0.96600 1.02066 0.95812 1.21656 0.96098 0.96472 0.94018 1.21601 1.02238 0.93232 1.01371 1.21684 1.01907 0.98432 0.96761 1.23224 0.97032 1.00977 0.95490 0.91806 0.91961 0.92011 0.93337 0.93448 0.97867 1.00753 0.93042 0.83678 0.90030 0.89568 0.90913 0.92377 0.91045 0.93026 0.92684 0.91531 0.92660 0.93149 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 9.16 71.98 0.66 -3.58 16 2 C 0.09 3.13 2.58 44.92 0.12 3.24 16 3 H 0.06 2.05 7.46 -2.39 -0.02 2.03 16 4 C -0.09 -3.83 4.83 30.60 0.15 -3.69 16 5 C 0.04 2.17 4.86 29.85 0.15 2.31 16 6 C -0.54 -32.48 9.11 25.60 0.23 -32.25 16 7 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 8 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 9 N -0.93 -59.60 13.29 21.45 0.28 -59.31 16 10 Si 0.96 46.04 29.54 68.60 2.03 48.07 16 11 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 N -0.68 -22.62 5.82 -466.75 -2.72 -25.34 16 15 C 0.07 1.88 3.65 45.44 0.17 2.04 16 16 C -0.14 -3.01 6.81 31.12 0.21 -2.79 16 17 C -0.08 -1.70 1.39 -51.66 -0.07 -1.77 16 18 C -0.13 -2.37 9.07 71.98 0.65 -1.71 16 19 C -0.13 -2.32 9.19 71.98 0.66 -1.66 16 20 C -0.13 -3.58 7.03 31.12 0.22 -3.37 16 21 H 0.06 1.41 8.07 -2.39 -0.02 1.39 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.06 1.48 8.13 -2.38 -0.02 1.46 16 24 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 27 H -0.03 -1.59 8.14 -2.38 -0.02 -1.61 16 28 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.34 10.14 7.93 -89.70 -0.71 9.43 16 30 H 0.08 2.43 6.99 -2.39 -0.02 2.41 16 31 H 0.09 1.73 7.65 -2.39 -0.02 1.71 16 32 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 33 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.01 7.34 -2.39 -0.02 0.99 16 36 H 0.05 0.98 7.95 -2.39 -0.02 0.96 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 Total: -1.00 -67.15 317.88 3.45 -63.70 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.26 Total: 15.80 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 3.60 Total: -42.91 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.43 Total: -84.65 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -67.15 3.45 -63.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.165 kcal (2) G-P(sol) polarization free energy of solvation -67.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds