Wall clock time and date at job start Mon Mar 30 2020 17:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46851 * 2 1 4 4 C 1.52991 * 109.46996 * 240.00423 * 2 1 3 5 5 C 1.53004 * 109.47283 * 178.53083 * 4 2 1 6 6 C 1.50697 * 109.47291 * 184.91562 * 5 4 2 7 7 H 1.07996 * 120.00026 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99876 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99927 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00002 * 0.02562 * 8 6 5 11 11 H 1.48490 * 109.47353 * 89.99665 * 10 8 6 12 12 H 1.48501 * 109.46890 * 209.99893 * 10 8 6 13 13 H 1.48502 * 109.46991 * 329.99382 * 10 8 6 14 14 N 1.46897 * 109.47184 * 119.99745 * 2 1 3 15 15 C 1.46855 * 110.99601 * 58.93093 * 14 2 1 16 16 C 1.53034 * 109.51070 * 174.15038 * 15 14 2 17 17 C 1.53126 * 109.27653 * 59.19017 * 16 15 14 18 18 C 1.53114 * 109.15908 * 302.33929 * 17 16 15 19 19 C 1.46847 * 110.99532 * 294.73073 * 14 2 1 20 20 H 1.09001 * 109.46523 * 65.83318 * 19 14 2 21 21 C 1.53001 * 109.45955 * 305.85698 * 19 14 2 22 22 H 1.08995 * 109.47599 * 176.66224 * 1 2 3 23 23 H 1.09002 * 109.47343 * 296.66666 * 1 2 3 24 24 H 1.09000 * 109.47239 * 56.66220 * 1 2 3 25 25 H 1.09007 * 109.47314 * 298.52812 * 4 2 1 26 26 H 1.09000 * 109.47876 * 58.52758 * 4 2 1 27 27 H 1.09005 * 109.46742 * 304.92125 * 5 4 2 28 28 H 1.09000 * 109.46949 * 64.91143 * 5 4 2 29 29 H 0.97001 * 119.99534 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.45862 * 54.14707 * 15 14 2 31 31 H 1.08995 * 109.46245 * 294.16206 * 15 14 2 32 32 H 1.09004 * 109.50078 * 179.12670 * 16 15 14 33 33 H 1.08996 * 109.50995 * 299.24626 * 16 15 14 34 34 H 1.08997 * 109.52286 * 62.24704 * 17 16 15 35 35 H 1.09005 * 109.51976 * 182.37532 * 17 16 15 36 36 H 1.09003 * 109.50013 * 177.59683 * 18 17 16 37 37 H 1.08995 * 109.50376 * 297.71471 * 18 17 16 38 38 H 1.08996 * 109.47572 * 307.03999 * 21 19 14 39 39 H 1.08999 * 109.47241 * 67.04137 * 21 19 14 40 40 H 1.09006 * 109.47120 * 187.04089 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2492 5 6 3.5695 -0.6892 -1.2679 6 6 4.0689 -1.2920 -2.5557 7 1 3.3657 -1.6606 -3.2877 8 6 5.4235 -1.3719 -2.7997 9 7 5.8594 -1.8984 -3.9233 10 14 6.6399 -0.7337 -1.5337 11 1 6.9963 -1.8273 -0.5945 12 1 7.8648 -0.2536 -2.2223 13 1 6.0253 0.3872 -0.7780 14 7 2.0197 -0.6924 1.1994 15 6 1.5280 -2.0754 1.2462 16 6 2.1723 -2.8073 2.4256 17 6 1.8227 -2.0774 3.7255 18 6 2.3023 -0.6263 3.6316 19 6 1.6543 0.0424 2.4172 20 1 0.5706 0.0358 2.5341 21 6 2.1463 1.4870 2.3077 22 1 -0.3634 -1.0258 -0.0598 23 1 -0.3634 0.4612 0.9184 24 1 -0.3634 0.5648 -0.8586 25 1 1.6983 -1.7562 -1.2362 26 1 1.6553 -0.2228 -2.1390 27 1 3.9123 0.3428 -1.1927 28 1 3.9552 -1.2624 -0.4248 29 1 6.8124 -1.9550 -4.0947 30 1 1.7868 -2.5844 0.3178 31 1 0.4450 -2.0719 1.3688 32 1 1.7955 -3.8292 2.4695 33 1 3.2545 -2.8232 2.2969 34 1 0.7431 -2.0953 3.8743 35 1 2.3143 -2.5710 4.5640 36 1 2.0184 -0.0900 4.5371 37 1 3.3866 -0.6078 3.5219 38 1 3.2091 1.4916 2.0660 39 1 1.5928 2.0008 1.5218 40 1 1.9875 1.9979 3.2575 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:25 Heat of formation + Delta-G solvation = -40.000348 kcal Electronic energy + Delta-G solvation = -16752.710082 eV Core-core repulsion = 14372.550903 eV Total energy + Delta-G solvation = -2380.159179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72221 -36.66758 -34.92522 -33.61041 -32.34413 -30.42625 -27.88025 -27.16654 -25.10784 -23.08262 -22.24331 -21.24505 -19.78679 -18.79737 -17.32090 -16.32418 -16.14409 -15.51384 -15.26036 -15.10793 -14.80648 -14.66467 -14.00045 -13.84068 -13.59800 -13.25460 -13.09114 -12.90955 -12.79099 -12.64643 -12.50994 -12.16341 -11.81879 -11.69744 -11.57327 -11.51337 -11.37310 -11.19580 -10.91696 -10.87733 -10.72377 -8.96538 -8.27219 -6.29167 1.36319 1.37242 1.51753 2.38651 3.04311 3.09266 3.89892 3.92518 3.99201 4.10203 4.27821 4.36766 4.41073 4.48381 4.51119 4.61891 4.69742 4.76829 4.81537 4.89300 4.92166 4.99760 5.03626 5.09499 5.11556 5.18513 5.27401 5.29338 5.32777 5.34205 5.42393 5.59225 5.60687 5.71445 5.75574 6.33094 6.37816 6.45767 6.79586 7.35445 8.89893 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027236 B = 0.008295 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.794028 B = 3374.805397 C = 3597.638305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 H 0.081 0.919 4 C -0.090 4.090 5 C 0.009 3.991 6 C -0.530 4.530 7 H 0.028 0.972 8 C 0.003 3.997 9 N -0.955 5.955 10 Si 0.952 3.048 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.250 1.250 14 N -0.539 5.539 15 C 0.053 3.947 16 C -0.118 4.118 17 C -0.113 4.113 18 C -0.110 4.110 19 C 0.079 3.921 20 H 0.047 0.953 21 C -0.146 4.146 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.007 0.993 28 H 0.020 0.980 29 H 0.265 0.735 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.581 4.112 17.994 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.026 4.026 3 H 0.099 0.901 4 C -0.128 4.128 5 C -0.028 4.028 6 C -0.568 4.568 7 H 0.047 0.953 8 C -0.193 4.193 9 N -0.596 5.596 10 Si 0.776 3.224 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.173 1.173 14 N -0.264 5.264 15 C -0.075 4.075 16 C -0.156 4.156 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.029 4.029 20 H 0.064 0.936 21 C -0.203 4.203 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.923 4.061 17.883 20.851 hybrid contribution 0.011 -0.085 -0.416 0.425 sum -9.912 3.976 17.467 20.473 Atomic orbital electron populations 1.22354 0.96427 1.02064 1.02472 1.21747 0.93133 0.98118 0.89613 0.90126 1.21447 0.96239 0.99166 0.95904 1.19269 0.94094 0.95393 0.94062 1.21662 0.92224 1.39135 1.03794 0.95348 1.25985 1.00721 0.95132 0.97418 1.70083 1.15013 1.47660 1.26857 0.85624 0.77760 0.79939 0.79087 1.19479 1.21053 1.17325 1.62088 1.60320 1.02105 1.01869 1.22087 0.97040 0.89379 0.99010 1.21596 1.00540 0.98914 0.94523 1.21540 1.01202 0.95428 0.96927 1.21640 1.00407 0.95883 0.96866 1.21683 0.97568 0.93771 0.89886 0.93563 1.21897 1.01235 0.94891 1.02305 0.92755 0.91497 0.91810 0.93486 0.93397 0.97447 0.96132 0.92673 0.92422 0.94115 0.90704 0.93108 0.91486 0.90865 0.89807 0.92708 0.93454 0.92654 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 8.47 71.98 0.61 -3.82 16 2 C 0.08 2.60 2.00 44.91 0.09 2.69 16 3 H 0.08 2.58 6.06 -2.38 -0.01 2.57 16 4 C -0.09 -3.65 4.38 30.59 0.13 -3.52 16 5 C 0.01 0.46 3.83 29.85 0.11 0.57 16 6 C -0.53 -32.07 9.66 25.60 0.25 -31.82 16 7 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 8 C 0.00 0.21 5.47 84.65 0.46 0.67 16 9 N -0.95 -62.11 13.96 21.45 0.30 -61.81 16 10 Si 0.95 47.07 27.47 68.60 1.88 48.96 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 13 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 14 N -0.54 -16.37 3.87 -846.04 -3.27 -19.64 16 15 C 0.05 1.52 4.63 86.32 0.40 1.92 16 16 C -0.12 -2.96 6.09 30.65 0.19 -2.78 16 17 C -0.11 -2.27 6.00 30.67 0.18 -2.08 16 18 C -0.11 -2.33 5.37 30.64 0.16 -2.17 16 19 C 0.08 1.88 2.01 44.94 0.09 1.97 16 20 H 0.05 1.03 6.66 -2.39 -0.02 1.01 16 21 C -0.15 -3.29 8.52 71.98 0.61 -2.68 16 22 H 0.05 1.38 6.71 -2.39 -0.02 1.37 16 23 H 0.07 1.46 6.50 -2.39 -0.02 1.45 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.94 6.23 -2.38 -0.01 1.92 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.01 0.36 7.20 -2.38 -0.02 0.34 16 28 H 0.02 1.02 7.23 -2.39 -0.02 1.01 16 29 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 30 H 0.06 1.97 6.01 -2.39 -0.01 1.96 16 31 H 0.04 1.06 6.69 -2.39 -0.02 1.04 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.24 6.64 -2.39 -0.02 1.22 16 40 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -67.54 296.14 3.13 -64.42 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.92 Total: 9.12 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 3.30 Total: -41.04 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.97 Total: -81.45 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.88 Total: 48.96 kcal Total: -67.54 3.13 -64.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.417 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds