Wall clock time and date at job start Mon Mar 30 2020 17:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47253 * 2 1 4 4 C 1.53006 * 109.46992 * 240.00766 * 2 1 3 5 5 C 1.52992 * 109.47090 * 175.00167 * 4 2 1 6 6 C 1.50704 * 109.47259 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00341 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99860 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99956 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47276 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47280 * 120.00059 * 10 8 6 13 13 H 1.48500 * 109.46826 * 239.99990 * 10 8 6 14 14 N 1.46894 * 109.47357 * 120.00439 * 2 1 3 15 15 C 1.46900 * 111.00033 * 268.16322 * 14 2 1 16 16 H 1.08996 * 109.47260 * 331.40447 * 15 14 2 17 17 C 1.52998 * 109.47186 * 91.40466 * 15 14 2 18 18 C 1.53002 * 109.46912 * 211.40386 * 15 14 2 19 19 C 1.53781 * 113.61479 * 275.45731 * 18 15 14 20 20 C 1.53782 * 87.08534 * 220.02063 * 19 18 15 21 21 C 1.53784 * 113.61372 * 177.96271 * 18 15 14 22 22 H 1.08999 * 109.47147 * 186.17640 * 1 2 3 23 23 H 1.09001 * 109.46716 * 306.18049 * 1 2 3 24 24 H 1.09000 * 109.47053 * 66.17265 * 1 2 3 25 25 H 1.09005 * 109.46653 * 295.00143 * 4 2 1 26 26 H 1.09001 * 109.47340 * 54.99763 * 4 2 1 27 27 H 1.09005 * 109.47353 * 299.99547 * 5 4 2 28 28 H 1.09001 * 109.47360 * 59.99607 * 5 4 2 29 29 H 0.97002 * 120.00259 * 179.97438 * 9 8 6 30 30 H 1.00903 * 111.00371 * 144.20901 * 14 2 1 31 31 H 1.08999 * 109.47286 * 52.30778 * 17 15 14 32 32 H 1.08993 * 109.47230 * 172.30701 * 17 15 14 33 33 H 1.08997 * 109.47009 * 292.31100 * 17 15 14 34 34 H 1.08999 * 112.85460 * 46.76504 * 18 15 14 35 35 H 1.09002 * 113.61444 * 334.56904 * 19 18 15 36 36 H 1.09003 * 113.61416 * 105.47371 * 19 18 15 37 37 H 1.08995 * 113.61282 * 270.88822 * 20 19 18 38 38 H 1.08995 * 113.69332 * 139.99087 * 20 19 18 39 39 H 1.08998 * 113.61283 * 254.52784 * 21 18 15 40 40 H 1.09000 * 113.61169 * 25.43466 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 6 4.0672 -1.3240 -2.5441 7 1 3.3687 -1.8043 -3.2133 8 6 5.4184 -1.3603 -2.8159 9 7 6.2688 -0.7741 -2.0018 10 14 6.0409 -2.2407 -4.3412 11 1 4.8910 -2.8130 -5.0864 12 1 6.7634 -1.2764 -5.2092 13 1 6.9634 -3.3332 -3.9402 14 7 2.0197 -0.6925 1.1993 15 6 2.2367 0.2536 2.3019 16 1 2.4828 1.2347 1.8957 17 6 0.9638 0.3552 3.1446 18 6 3.3901 -0.2397 3.1777 19 6 2.9607 -1.2612 4.2440 20 6 3.9250 -0.5459 5.2049 21 6 3.7323 0.7097 4.3381 22 1 -0.3633 -1.0217 0.1106 23 1 -0.3633 0.6067 0.8295 24 1 -0.3633 0.4152 -0.9401 25 1 1.7516 -1.7714 -1.2058 26 1 1.6054 -0.2615 -2.1371 27 1 3.8532 0.4371 -1.3574 28 1 3.9994 -1.0728 -0.4261 29 1 7.2195 -0.7999 -2.1928 30 1 2.8607 -1.2127 0.9985 31 1 0.6412 -0.6439 3.4376 32 1 1.1650 0.9482 4.0368 33 1 0.1782 0.8337 2.5599 34 1 4.2589 -0.5511 2.5977 35 1 1.9132 -1.1763 4.5332 36 1 3.2551 -2.2848 4.0118 37 1 4.9401 -0.9421 5.1798 38 1 3.5364 -0.4410 6.2178 39 1 4.6495 1.2774 4.1818 40 1 2.8957 1.3334 4.6530 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:31 Heat of formation + Delta-G solvation = -5.479622 kcal Electronic energy + Delta-G solvation = -16098.178590 eV Core-core repulsion = 13719.516342 eV Total energy + Delta-G solvation = -2378.662248 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40146 -36.74248 -33.39202 -31.97518 -29.29561 -28.36945 -25.66481 -25.19484 -24.95079 -21.57364 -20.92180 -19.55473 -18.50162 -16.42336 -15.87099 -15.22418 -15.04652 -14.54905 -14.20714 -13.61144 -12.82191 -12.62124 -12.56886 -12.45431 -12.08162 -11.77577 -11.60639 -11.53172 -11.14374 -11.01885 -10.96473 -10.85258 -10.46327 -10.35483 -10.24458 -10.06150 -9.72520 -9.63045 -9.25546 -8.98885 -8.35784 -7.88861 -6.00425 -4.02307 3.30933 3.38502 3.42998 4.46161 4.48435 4.79652 4.85667 4.93398 5.16218 5.35428 5.37789 5.49975 5.64297 5.67930 5.78665 5.84460 5.85617 5.94912 5.97965 6.03347 6.10309 6.14603 6.21001 6.26652 6.36193 6.45234 6.54082 6.60822 6.62921 6.74480 6.95514 7.11971 7.64155 7.64626 7.83716 7.97222 8.04967 8.43245 9.04693 9.61927 11.10761 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026739 B = 0.006495 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.919440 B = 4310.203710 C = 5106.962189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.118 4.118 5 C 0.021 3.979 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.681 5.681 15 C 0.094 3.906 16 H 0.043 0.957 17 C -0.140 4.140 18 C -0.115 4.115 19 C -0.133 4.133 20 C -0.144 4.144 21 C -0.137 4.137 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.011 0.989 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.351 0.649 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 2.226 11.893 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.057 0.943 4 C -0.156 4.156 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.316 5.316 15 C -0.016 4.016 16 H 0.061 0.939 17 C -0.198 4.198 18 C -0.134 4.134 19 C -0.170 4.170 20 C -0.182 4.182 21 C -0.175 4.175 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.173 0.827 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.174 2.069 12.113 14.758 hybrid contribution 1.370 0.031 -1.192 1.816 sum -6.805 2.100 10.920 13.037 Atomic orbital electron populations 1.21884 0.95990 1.01583 1.00032 1.21695 0.94482 0.96059 0.90525 0.94318 1.21887 0.99638 0.99414 0.94626 1.19125 0.88826 0.96812 0.96868 1.21288 0.91943 1.34078 1.08304 0.92648 1.25025 0.97101 0.95637 0.96707 1.69970 1.02285 1.44192 1.37071 0.86552 0.78852 0.79470 0.83235 1.19730 1.21068 1.21029 1.60641 1.38232 1.26359 1.06347 1.21451 0.93840 0.94431 0.91913 0.93872 1.21998 0.97442 1.01638 0.98681 1.22805 0.98339 0.97171 0.95093 1.23009 0.99710 0.98363 0.95964 1.22815 1.00029 0.97499 0.97827 1.22968 1.01438 0.96457 0.96630 0.92482 0.93603 0.93334 0.92592 0.92869 0.97017 0.96712 0.93130 0.82651 0.91848 0.93201 0.93044 0.88985 0.89443 0.91761 0.90513 0.92003 0.91788 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.28 37.16 0.34 -1.73 16 2 C 0.08 1.46 2.67 -67.71 -0.18 1.28 16 3 H 0.04 0.73 7.23 -51.93 -0.38 0.35 16 4 C -0.12 -2.46 4.69 -26.73 -0.13 -2.59 16 5 C 0.02 0.53 4.82 -27.88 -0.13 0.40 16 6 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 N -0.68 -11.57 6.18 -99.74 -0.62 -12.19 16 15 C 0.09 1.39 2.79 -67.71 -0.19 1.20 16 16 H 0.04 0.70 7.24 -51.93 -0.38 0.32 16 17 C -0.14 -1.76 8.01 37.16 0.30 -1.47 16 18 C -0.12 -1.61 3.60 -89.81 -0.32 -1.93 16 19 C -0.13 -1.64 7.31 -25.92 -0.19 -1.83 16 20 C -0.14 -1.60 8.08 -25.92 -0.21 -1.81 16 21 C -0.14 -1.63 7.45 -25.91 -0.19 -1.82 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.63 6.00 -51.93 -0.31 0.32 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.01 0.39 6.48 -51.93 -0.34 0.06 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.35 6.67 5.88 -39.29 -0.23 6.44 16 31 H 0.06 0.80 6.64 -51.93 -0.34 0.46 16 32 H 0.05 0.55 6.33 -51.93 -0.33 0.22 16 33 H 0.05 0.65 6.03 -51.93 -0.31 0.34 16 34 H 0.09 1.47 7.96 -51.93 -0.41 1.06 16 35 H 0.09 1.02 5.61 -51.93 -0.29 0.73 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 LS Contribution 304.76 15.07 4.59 4.59 Total: -1.00 -28.90 304.76 -8.62 -37.53 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.00 Total: 3.28 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -1.31 Total: -23.84 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.12 Total: -38.35 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.90 -8.62 -37.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.047 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds