Wall clock time and date at job start Mon Mar 30 2020 17:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47204 * 2 1 4 4 N 1.46904 * 109.47214 * 119.99948 * 2 1 3 5 5 C 1.46900 * 110.99978 * 209.81088 * 4 2 1 6 6 H 1.09004 * 109.46913 * 324.98957 * 5 4 2 7 7 C 1.52996 * 109.47418 * 84.98904 * 5 4 2 8 8 C 1.53001 * 109.47220 * 204.99517 * 5 4 2 9 9 C 1.53000 * 109.47247 * 64.99636 * 8 5 4 10 10 C 1.50695 * 109.47287 * 180.02562 * 9 8 5 11 11 H 1.08007 * 119.99797 * 359.72107 * 10 9 8 12 12 C 1.37874 * 120.00407 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00439 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99695 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46981 * 90.00244 * 14 12 10 16 16 H 1.48493 * 109.47448 * 210.00242 * 14 12 10 17 17 H 1.48501 * 109.47523 * 330.00570 * 14 12 10 18 18 C 1.52999 * 109.47160 * 239.99763 * 2 1 3 19 19 C 1.53786 * 113.61440 * 159.13916 * 18 2 1 20 20 C 1.53958 * 87.01808 * 220.04549 * 19 18 2 21 21 C 1.53775 * 113.61653 * 61.53060 * 18 2 1 22 22 H 1.08993 * 109.47289 * 294.89970 * 1 2 3 23 23 H 1.08999 * 109.47264 * 54.89850 * 1 2 3 24 24 H 1.09006 * 109.47038 * 174.89837 * 1 2 3 25 25 H 1.00895 * 110.99387 * 333.76083 * 4 2 1 26 26 H 1.09004 * 109.46812 * 64.71380 * 7 5 4 27 27 H 1.08999 * 109.47707 * 184.70741 * 7 5 4 28 28 H 1.09000 * 109.47728 * 304.71212 * 7 5 4 29 29 H 1.09002 * 109.46851 * 304.99783 * 8 5 4 30 30 H 1.08999 * 109.47185 * 184.99954 * 8 5 4 31 31 H 1.09002 * 109.47074 * 60.00284 * 9 8 5 32 32 H 1.09002 * 109.47070 * 300.00728 * 9 8 5 33 33 H 0.97000 * 120.00100 * 179.97438 * 13 12 10 34 34 H 1.09003 * 112.84939 * 290.33355 * 18 2 1 35 35 H 1.08997 * 113.61230 * 334.56467 * 19 18 2 36 36 H 1.08994 * 113.61739 * 105.47312 * 19 18 2 37 37 H 1.08997 * 113.54170 * 270.81411 * 20 19 18 38 38 H 1.08997 * 113.74368 * 139.94047 * 20 19 18 39 39 H 1.09008 * 113.61348 * 254.52790 * 21 18 2 40 40 H 1.08999 * 113.61531 * 25.42997 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3170 -0.1519 1.6267 6 1 3.8991 0.1316 0.7497 7 6 3.0917 1.0779 2.5085 8 6 4.0767 -1.2165 2.4206 9 6 4.4113 -2.3946 1.5035 10 6 5.1590 -3.4435 2.2856 11 1 5.3781 -3.2836 3.3310 12 6 5.5690 -4.6045 1.6651 13 7 6.2220 -5.5196 2.3475 14 14 5.1969 -4.8775 -0.1450 15 1 6.3111 -4.3392 -0.9661 16 1 5.0477 -6.3317 -0.4059 17 1 3.9363 -4.1786 -0.5023 18 6 2.0400 -0.7213 -1.2492 19 6 3.4867 -0.3577 -1.6230 20 6 3.0234 -0.3621 -3.0912 21 6 1.6121 -0.0511 -2.5654 22 1 -0.3633 0.4326 0.9321 23 1 -0.3634 0.5909 -0.8408 24 1 -0.3633 -1.0237 -0.0914 25 1 1.3436 -0.6430 1.9468 26 1 2.5828 0.7795 3.4250 27 1 4.0529 1.5281 2.7568 28 1 2.4790 1.8024 1.9721 29 1 3.4573 -1.5641 3.2473 30 1 4.9991 -0.7880 2.8128 31 1 5.0308 -2.0470 0.6767 32 1 3.4889 -2.8230 1.1112 33 1 6.5101 -6.3366 1.9110 34 1 1.8520 -1.7947 -1.2246 35 1 3.7962 0.6244 -1.2658 36 1 4.2080 -1.1408 -1.3896 37 1 3.1055 -1.3375 -3.5707 38 1 3.4533 0.4412 -3.6895 39 1 0.8221 -0.5870 -3.0917 40 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:33 Heat of formation + Delta-G solvation = -6.391937 kcal Electronic energy + Delta-G solvation = -16454.176442 eV Core-core repulsion = 14075.474633 eV Total energy + Delta-G solvation = -2378.701809 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31050 -36.67893 -33.58391 -32.23086 -29.91949 -27.88058 -25.70517 -25.19627 -25.09410 -21.29084 -20.64922 -19.85861 -19.06319 -16.52895 -15.89262 -15.10634 -14.80507 -14.62522 -14.08780 -13.30966 -12.99097 -12.85112 -12.61866 -12.45070 -12.35518 -12.20144 -12.02605 -11.62172 -11.33148 -11.30023 -11.01558 -10.72865 -10.58030 -10.29305 -9.98287 -9.91546 -9.71190 -9.57028 -9.38541 -8.94225 -8.39192 -7.90489 -5.90880 -3.86360 3.40678 3.47674 3.56041 4.37320 4.58929 4.74445 4.86398 4.96465 4.99407 5.30801 5.34060 5.44551 5.45226 5.49616 5.58251 5.65435 5.77386 5.79811 5.84083 5.95467 6.00196 6.07358 6.12563 6.21685 6.25255 6.33338 6.37645 6.46721 6.62503 6.73425 6.79494 7.18062 7.48661 7.59978 7.79759 7.84874 7.99226 8.70369 9.15863 9.73707 11.23126 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.009156 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.099807 B = 3057.352345 C = 3844.358571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 H 0.040 0.960 4 N -0.670 5.670 5 C 0.078 3.922 6 H 0.076 0.924 7 C -0.180 4.180 8 C -0.090 4.090 9 C -0.003 4.003 10 C -0.515 4.515 11 H 0.067 0.933 12 C 0.063 3.937 13 N -0.911 5.911 14 Si 0.878 3.122 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.259 1.259 18 C -0.092 4.092 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.137 4.137 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.335 0.665 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.001 0.999 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.535 13.748 -7.770 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 H 0.058 0.942 4 N -0.301 5.301 5 C -0.031 4.031 6 H 0.094 0.906 7 C -0.239 4.239 8 C -0.128 4.128 9 C -0.040 4.040 10 C -0.554 4.554 11 H 0.085 0.915 12 C -0.137 4.137 13 N -0.551 5.551 14 Si 0.705 3.295 15 H -0.207 1.207 16 H -0.218 1.218 17 H -0.184 1.184 18 C -0.111 4.111 19 C -0.175 4.175 20 C -0.182 4.182 21 C -0.175 4.175 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.154 0.846 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.184 13.054 -8.135 18.447 hybrid contribution -0.278 0.573 -0.484 0.799 sum -10.462 13.626 -8.619 19.220 Atomic orbital electron populations 1.21963 0.95400 1.02477 1.01188 1.21477 0.93807 0.94969 0.91377 0.94185 1.60528 1.04626 1.57976 1.07009 1.21867 0.90820 0.92858 0.97578 0.90623 1.22534 1.01713 0.99159 1.00536 1.21442 0.97479 0.95597 0.98255 1.19442 0.96564 0.93304 0.94719 1.21297 1.34616 1.01209 0.98236 0.91496 1.25022 0.94788 0.95960 0.97900 1.69934 1.39890 1.08782 1.36472 0.86791 0.79630 0.76890 0.86150 1.20665 1.21811 1.18378 1.22533 0.95689 1.00572 0.92278 1.22976 0.97544 1.01631 0.95302 1.22847 0.96880 1.01478 0.96967 1.22936 0.96856 1.00359 0.97328 0.93101 0.92389 0.91822 0.84610 0.92678 0.92359 0.93800 0.93015 0.93165 0.98024 0.95027 0.93042 0.88653 0.90795 0.90902 0.90433 0.92002 0.91922 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.92 37.15 0.33 -1.32 16 2 C 0.09 1.21 2.32 -67.71 -0.16 1.06 16 3 H 0.04 0.51 6.95 -51.93 -0.36 0.15 16 4 N -0.67 -10.22 5.53 -99.74 -0.55 -10.77 16 5 C 0.08 1.26 2.36 -67.71 -0.16 1.10 16 6 H 0.08 1.25 5.69 -51.93 -0.30 0.96 16 7 C -0.18 -2.39 9.16 37.16 0.34 -2.05 16 8 C -0.09 -1.82 4.83 -26.73 -0.13 -1.95 16 9 C 0.00 -0.07 3.93 -27.89 -0.11 -0.18 16 10 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 11 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.91 -29.10 13.96 55.43 0.77 -28.33 16 14 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 15 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 17 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 18 C -0.09 -1.27 3.41 -89.81 -0.31 -1.58 16 19 C -0.14 -1.97 6.24 -25.82 -0.16 -2.13 16 20 C -0.14 -1.76 8.09 -25.82 -0.21 -1.97 16 21 C -0.14 -1.55 6.85 -25.92 -0.18 -1.73 16 22 H 0.05 0.50 8.02 -51.93 -0.42 0.09 16 23 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.34 4.69 7.96 -39.29 -0.31 4.38 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.00 0.04 7.57 -51.93 -0.39 -0.36 16 32 H 0.03 0.80 6.81 -51.93 -0.35 0.45 16 33 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 34 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.07 1.00 7.36 -51.93 -0.38 0.62 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 310.26 15.07 4.68 4.68 Total: -1.00 -31.16 310.26 -8.47 -39.64 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.53 Total: 1.32 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -1.17 Total: -24.52 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.22 Total: -39.10 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.16 -8.47 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.244 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds