Wall clock time and date at job start Mon Mar 30 2020 17:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47204 * 2 1 4 4 N 1.46904 * 109.47214 * 119.99948 * 2 1 3 5 5 C 1.46900 * 110.99978 * 209.81088 * 4 2 1 6 6 H 1.09004 * 109.46913 * 324.98957 * 5 4 2 7 7 C 1.52996 * 109.47418 * 84.98904 * 5 4 2 8 8 C 1.53001 * 109.47220 * 204.99517 * 5 4 2 9 9 C 1.53000 * 109.47247 * 64.99636 * 8 5 4 10 10 C 1.50695 * 109.47287 * 180.02562 * 9 8 5 11 11 H 1.08007 * 119.99797 * 359.72107 * 10 9 8 12 12 C 1.37874 * 120.00407 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00439 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99695 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46981 * 90.00244 * 14 12 10 16 16 H 1.48493 * 109.47448 * 210.00242 * 14 12 10 17 17 H 1.48501 * 109.47523 * 330.00570 * 14 12 10 18 18 C 1.52999 * 109.47160 * 239.99763 * 2 1 3 19 19 C 1.53786 * 113.61440 * 159.13916 * 18 2 1 20 20 C 1.53958 * 87.01808 * 220.04549 * 19 18 2 21 21 C 1.53775 * 113.61653 * 61.53060 * 18 2 1 22 22 H 1.08993 * 109.47289 * 294.89970 * 1 2 3 23 23 H 1.08999 * 109.47264 * 54.89850 * 1 2 3 24 24 H 1.09006 * 109.47038 * 174.89837 * 1 2 3 25 25 H 1.00895 * 110.99387 * 333.76083 * 4 2 1 26 26 H 1.09004 * 109.46812 * 64.71380 * 7 5 4 27 27 H 1.08999 * 109.47707 * 184.70741 * 7 5 4 28 28 H 1.09000 * 109.47728 * 304.71212 * 7 5 4 29 29 H 1.09002 * 109.46851 * 304.99783 * 8 5 4 30 30 H 1.08999 * 109.47185 * 184.99954 * 8 5 4 31 31 H 1.09002 * 109.47074 * 60.00284 * 9 8 5 32 32 H 1.09002 * 109.47070 * 300.00728 * 9 8 5 33 33 H 0.97000 * 120.00100 * 179.97438 * 13 12 10 34 34 H 1.09003 * 112.84939 * 290.33355 * 18 2 1 35 35 H 1.08997 * 113.61230 * 334.56467 * 19 18 2 36 36 H 1.08994 * 113.61739 * 105.47312 * 19 18 2 37 37 H 1.08997 * 113.54170 * 270.81411 * 20 19 18 38 38 H 1.08997 * 113.74368 * 139.94047 * 20 19 18 39 39 H 1.09008 * 113.61348 * 254.52790 * 21 18 2 40 40 H 1.08999 * 113.61531 * 25.42997 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3170 -0.1519 1.6267 6 1 3.8991 0.1316 0.7497 7 6 3.0917 1.0779 2.5085 8 6 4.0767 -1.2165 2.4206 9 6 4.4113 -2.3946 1.5035 10 6 5.1590 -3.4435 2.2856 11 1 5.3781 -3.2836 3.3310 12 6 5.5690 -4.6045 1.6651 13 7 6.2220 -5.5196 2.3475 14 14 5.1969 -4.8775 -0.1450 15 1 6.3111 -4.3392 -0.9661 16 1 5.0477 -6.3317 -0.4059 17 1 3.9363 -4.1786 -0.5023 18 6 2.0400 -0.7213 -1.2492 19 6 3.4867 -0.3577 -1.6230 20 6 3.0234 -0.3621 -3.0912 21 6 1.6121 -0.0511 -2.5654 22 1 -0.3633 0.4326 0.9321 23 1 -0.3634 0.5909 -0.8408 24 1 -0.3633 -1.0237 -0.0914 25 1 1.3436 -0.6430 1.9468 26 1 2.5828 0.7795 3.4250 27 1 4.0529 1.5281 2.7568 28 1 2.4790 1.8024 1.9721 29 1 3.4573 -1.5641 3.2473 30 1 4.9991 -0.7880 2.8128 31 1 5.0308 -2.0470 0.6767 32 1 3.4889 -2.8230 1.1112 33 1 6.5101 -6.3366 1.9110 34 1 1.8520 -1.7947 -1.2246 35 1 3.7962 0.6244 -1.2658 36 1 4.2080 -1.1408 -1.3896 37 1 3.1055 -1.3375 -3.5707 38 1 3.4533 0.4412 -3.6895 39 1 0.8221 -0.5870 -3.0917 40 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:33 Heat of formation + Delta-G solvation = -25.521788 kcal Electronic energy + Delta-G solvation = -16455.005974 eV Core-core repulsion = 14075.474633 eV Total energy + Delta-G solvation = -2379.531341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.36237 -37.93055 -35.38595 -33.93811 -31.66707 -28.95487 -27.07534 -26.69284 -26.07800 -22.93614 -21.83954 -21.34754 -20.15109 -18.80803 -17.03731 -16.34264 -16.06439 -15.93175 -15.81524 -14.82174 -14.58443 -14.22055 -13.95915 -13.76197 -13.45443 -13.32950 -13.23063 -13.07151 -12.89338 -12.53309 -12.31401 -12.00917 -12.00583 -11.67505 -11.48944 -11.37607 -11.29890 -11.20118 -10.89476 -10.83680 -10.72202 -9.06516 -8.27434 -6.28725 1.32988 1.35587 1.50665 2.37725 3.08954 3.28355 3.76643 3.87385 3.93783 4.01030 4.10289 4.31470 4.43092 4.47325 4.51313 4.61475 4.73802 4.86556 4.86762 4.88410 4.94738 4.99710 5.00882 5.07151 5.15239 5.17936 5.22212 5.26471 5.34830 5.41574 5.47523 5.62423 5.66978 5.73592 5.81043 6.34658 6.40017 6.73092 6.80356 7.35503 8.89832 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.009156 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.099807 B = 3057.352345 C = 3844.358571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.096 3.904 3 H 0.050 0.950 4 N -0.690 5.690 5 C 0.089 3.911 6 H 0.072 0.928 7 C -0.171 4.171 8 C -0.086 4.086 9 C 0.010 3.990 10 C -0.529 4.529 11 H 0.028 0.972 12 C 0.003 3.997 13 N -0.955 5.955 14 Si 0.949 3.051 15 H -0.270 1.270 16 H -0.285 1.285 17 H -0.248 1.248 18 C -0.100 4.100 19 C -0.146 4.146 20 C -0.142 4.142 21 C -0.119 4.119 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.342 0.658 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.001 0.999 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 15.786 -9.694 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 H 0.068 0.932 4 N -0.322 5.322 5 C -0.021 4.021 6 H 0.090 0.910 7 C -0.230 4.230 8 C -0.124 4.124 9 C -0.028 4.028 10 C -0.567 4.567 11 H 0.046 0.954 12 C -0.193 4.193 13 N -0.597 5.597 14 Si 0.773 3.227 15 H -0.195 1.195 16 H -0.211 1.211 17 H -0.171 1.171 18 C -0.119 4.119 19 C -0.183 4.183 20 C -0.179 4.179 21 C -0.157 4.157 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.071 0.929 25 H 0.162 0.838 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.907 15.108 -10.054 21.705 hybrid contribution 0.306 -0.099 0.214 0.387 sum -11.601 15.010 -9.840 21.370 Atomic orbital electron populations 1.21914 0.93532 1.02335 1.02622 1.21509 0.95252 0.94861 0.89680 0.93158 1.60422 1.04518 1.59113 1.08163 1.21604 0.90893 0.92394 0.97238 0.90981 1.22408 1.02379 0.97970 1.00226 1.21349 0.97880 0.95435 0.97717 1.19279 0.95247 0.93510 0.94736 1.21699 1.35055 1.02856 0.97103 0.95392 1.25976 0.94551 0.95621 1.03148 1.70081 1.41281 1.09558 1.38781 0.85669 0.80136 0.77120 0.79802 1.19495 1.21111 1.17116 1.22534 0.95688 0.99349 0.94366 1.23021 0.97042 1.00860 0.97391 1.22848 0.97536 1.01861 0.95683 1.22862 0.96456 1.01281 0.95108 0.91982 0.90541 0.92851 0.83850 0.92336 0.92083 0.91648 0.93881 0.93776 0.98035 0.95628 0.92718 0.91524 0.89887 0.94434 0.91066 0.90324 0.90911 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.92 71.98 0.64 -2.05 16 2 C 0.10 2.25 2.32 44.91 0.10 2.35 16 3 H 0.05 1.10 6.95 -2.39 -0.02 1.08 16 4 N -0.69 -19.95 5.53 -469.48 -2.60 -22.54 16 5 C 0.09 2.72 2.36 44.91 0.11 2.83 16 6 H 0.07 2.28 5.69 -2.38 -0.01 2.27 16 7 C -0.17 -4.09 9.16 71.98 0.66 -3.44 16 8 C -0.09 -3.49 4.83 30.59 0.15 -3.34 16 9 C 0.01 0.48 3.93 29.85 0.12 0.60 16 10 C -0.53 -32.32 9.66 25.60 0.25 -32.08 16 11 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 12 C 0.00 0.18 5.47 84.65 0.46 0.64 16 13 N -0.96 -62.67 13.96 21.45 0.30 -62.37 16 14 Si 0.95 47.43 27.47 68.60 1.88 49.32 16 15 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 17 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 18 C -0.10 -2.60 3.41 -10.27 -0.04 -2.63 16 19 C -0.15 -3.99 6.24 31.18 0.19 -3.80 16 20 C -0.14 -3.13 8.09 31.18 0.25 -2.88 16 21 C -0.12 -2.31 6.85 31.12 0.21 -2.10 16 22 H 0.06 1.01 8.02 -2.39 -0.02 0.99 16 23 H 0.08 1.14 7.67 -2.39 -0.02 1.12 16 24 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.34 8.93 7.96 -89.70 -0.71 8.22 16 26 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.31 7.45 -2.39 -0.02 1.29 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.00 0.07 7.57 -2.39 -0.02 0.05 16 32 H 0.03 1.30 6.81 -2.39 -0.02 1.28 16 33 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.08 7.36 -2.39 -0.02 2.06 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -68.80 310.26 2.91 -65.90 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.21 Total: 15.59 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 3.11 Total: -45.89 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -2.30 Total: -84.92 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.88 Total: 49.32 kcal Total: -68.80 2.91 -65.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.376 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds