Wall clock time and date at job start Mon Mar 30 2020 17:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 C 1.50699 * 109.47201 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00035 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00490 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00335 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99476 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47231 * 89.99991 * 10 8 6 12 12 H 1.48501 * 109.47245 * 209.99780 * 10 8 6 13 13 H 1.48494 * 109.47396 * 330.00222 * 10 8 6 14 14 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 15 15 C 1.46896 * 111.00084 * 306.05107 * 14 2 1 16 16 C 1.46904 * 110.99915 * 70.00061 * 14 2 1 17 17 C 1.52998 * 109.47235 * 170.00559 * 16 14 2 18 18 C 1.53001 * 109.46955 * 180.02562 * 17 16 14 19 19 C 1.53006 * 117.49542 * 243.61414 * 18 17 16 20 20 C 1.52994 * 60.00356 * 252.51300 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 25 25 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 26 26 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 27 27 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 28 28 H 0.97006 * 119.99718 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.47503 * 59.99333 * 15 14 2 30 30 H 1.09007 * 109.47634 * 179.97438 * 15 14 2 31 31 H 1.09003 * 109.46925 * 299.99540 * 15 14 2 32 32 H 1.08999 * 109.46953 * 290.00368 * 16 14 2 33 33 H 1.08998 * 109.47126 * 50.00315 * 16 14 2 34 34 H 1.09002 * 109.46812 * 299.99289 * 17 16 14 35 35 H 1.08999 * 109.47748 * 59.99629 * 17 16 14 36 36 H 1.08991 * 115.55335 * 29.32443 * 18 17 16 37 37 H 1.08999 * 117.49836 * 0.02562 * 19 18 17 38 38 H 1.08995 * 117.49591 * 145.01937 * 19 18 17 39 39 H 1.09001 * 117.50002 * 252.51174 * 20 19 18 40 40 H 1.09000 * 117.50138 * 107.48773 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8052 3.2127 8 6 5.4184 -1.3604 2.8157 9 7 5.8567 -1.9804 3.8895 10 14 6.6263 -0.5278 1.6594 11 1 6.8307 0.8797 2.0867 12 1 7.9238 -1.2493 1.6954 13 1 6.0849 -0.5516 0.2769 14 7 2.0197 -0.6925 -1.1993 15 6 1.4343 -2.0354 -1.3078 16 6 1.7530 0.0972 -2.4090 17 6 2.4885 -0.5257 -3.5972 18 6 2.2112 0.2972 -4.8569 19 6 1.4584 -0.3900 -5.9981 20 6 2.9536 -0.0965 -6.1356 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7714 1.2056 26 1 3.9995 -1.0728 0.4261 27 1 3.8532 0.4370 1.3574 28 1 6.8075 -2.0062 4.0805 29 1 0.3491 -1.9549 -1.3693 30 1 1.8134 -2.5258 -2.2045 31 1 1.7059 -2.6221 -0.4301 32 1 0.6815 0.1053 -2.6087 33 1 2.1026 1.1189 -2.2604 34 1 3.5600 -0.5337 -3.3975 35 1 2.1390 -1.5474 -3.7459 36 1 2.0185 1.3573 -4.6930 37 1 1.1604 -1.4281 -5.8511 38 1 0.7701 0.2181 -6.5849 39 1 3.2491 0.7047 -6.8130 40 1 3.6397 -0.9416 -6.0792 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:36 Heat of formation + Delta-G solvation = 10.198172 kcal Electronic energy + Delta-G solvation = -15877.923748 eV Core-core repulsion = 13499.941340 eV Total energy + Delta-G solvation = -2377.982408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.72802 -37.33103 -33.65072 -32.11922 -30.00164 -28.93308 -26.11542 -25.33928 -22.62748 -22.33389 -20.62981 -20.30771 -19.02122 -16.54498 -16.04440 -15.78346 -14.93261 -14.37270 -14.13519 -13.99221 -13.52965 -12.93151 -12.73237 -12.45751 -11.98628 -11.93681 -11.80786 -11.67468 -11.42555 -11.30409 -11.04344 -10.92110 -10.77791 -10.44820 -10.16716 -9.91453 -9.73157 -9.61524 -9.39708 -8.97756 -8.40906 -7.84439 -5.92555 -3.88664 3.40989 3.47869 3.57137 3.66799 4.15172 4.58239 4.69205 4.79949 4.82990 5.13231 5.27503 5.35096 5.43473 5.43820 5.47459 5.58138 5.61902 5.66240 5.70922 5.77532 5.81461 5.95457 5.99793 6.06088 6.17117 6.25806 6.28063 6.31341 6.41885 6.56957 6.75107 7.11906 7.44805 7.47930 7.56489 7.76033 7.96419 8.67626 9.13452 9.71887 11.21277 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.006391 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.608271 B = 4380.025632 C = 5131.838115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 H 0.076 0.924 4 C -0.094 4.094 5 C -0.007 4.007 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.527 5.527 15 C 0.018 3.982 16 C 0.058 3.942 17 C -0.088 4.088 18 C -0.148 4.148 19 C -0.184 4.184 20 C -0.182 4.182 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.004 0.996 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 4.195 -17.462 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 H 0.094 0.906 4 C -0.132 4.132 5 C -0.044 4.044 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.184 1.184 14 N -0.250 5.250 15 C -0.130 4.130 16 C -0.070 4.070 17 C -0.125 4.125 18 C -0.167 4.167 19 C -0.221 4.221 20 C -0.219 4.219 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.195 4.095 -17.315 20.028 hybrid contribution -0.168 0.525 -0.573 0.795 sum -9.363 4.619 -17.887 20.711 Atomic orbital electron populations 1.22483 0.98635 1.01852 1.01337 1.21912 0.91436 0.98413 0.91256 0.90631 1.21534 0.99104 0.99040 0.93474 1.19476 0.91373 0.96016 0.97530 1.21262 0.92815 1.33936 1.07496 0.91445 1.25017 0.98443 0.95081 0.95040 1.69934 1.14411 1.44135 1.26499 0.86784 0.80374 0.79494 0.82769 1.20599 1.21727 1.18430 1.62136 1.58583 1.02638 1.01664 1.22487 0.96457 0.91274 1.02779 1.22064 0.97416 0.97527 0.89955 1.21211 1.01674 0.98106 0.91536 1.22319 1.04441 0.99881 0.90023 1.23022 0.94690 1.01519 1.02843 1.22948 0.94806 1.03561 1.00571 0.92377 0.93515 0.92232 0.92772 0.92721 0.95127 0.97757 0.92985 0.95852 0.92023 0.90471 0.95255 0.91202 0.90591 0.91805 0.87977 0.88952 0.89216 0.89060 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.44 37.16 0.31 -2.20 16 2 C 0.08 1.28 2.31 -67.72 -0.16 1.13 16 3 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 4 C -0.09 -1.89 4.54 -26.73 -0.12 -2.01 16 5 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16 6 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 7 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.92 13.96 55.43 0.77 -28.14 16 10 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 14 N -0.53 -8.39 4.17 -234.89 -0.98 -9.37 16 15 C 0.02 0.26 8.59 60.06 0.52 0.78 16 16 C 0.06 0.77 4.49 -3.82 -0.02 0.75 16 17 C -0.09 -1.05 5.43 -26.73 -0.15 -1.20 16 18 C -0.15 -1.51 5.74 -90.61 -0.52 -2.03 16 19 C -0.18 -1.66 10.18 -26.73 -0.27 -1.94 16 20 C -0.18 -1.69 10.25 -26.73 -0.27 -1.97 16 21 H 0.06 0.78 6.33 -51.93 -0.33 0.45 16 22 H 0.05 0.58 6.91 -51.93 -0.36 0.22 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.05 1.11 6.34 -51.93 -0.33 0.78 16 26 H 0.03 0.78 6.81 -51.93 -0.35 0.42 16 27 H 0.00 0.10 7.57 -51.93 -0.39 -0.29 16 28 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 29 H 0.02 0.31 6.21 -51.93 -0.32 -0.02 16 30 H 0.06 0.82 6.30 -51.93 -0.33 0.49 16 31 H 0.08 1.25 6.37 -51.93 -0.33 0.92 16 32 H 0.03 0.36 7.06 -51.93 -0.37 0.00 16 33 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.75 6.21 -51.93 -0.32 0.43 16 36 H 0.10 1.00 8.07 -51.93 -0.42 0.58 16 37 H 0.09 0.82 8.03 -51.93 -0.42 0.41 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 308.58 15.07 4.65 4.65 Total: -1.00 -31.17 308.58 -8.65 -39.82 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -7.22 Total: -2.26 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -1.22 Total: -22.66 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.20 Total: -37.51 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.17 -8.65 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.020 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds