Wall clock time and date at job start Mon Mar 30 2020 17:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 C 1.50699 * 109.47201 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00035 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00490 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00335 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99476 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47231 * 89.99991 * 10 8 6 12 12 H 1.48501 * 109.47245 * 209.99780 * 10 8 6 13 13 H 1.48494 * 109.47396 * 330.00222 * 10 8 6 14 14 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 15 15 C 1.46896 * 111.00084 * 306.05107 * 14 2 1 16 16 C 1.46904 * 110.99915 * 70.00061 * 14 2 1 17 17 C 1.52998 * 109.47235 * 170.00559 * 16 14 2 18 18 C 1.53001 * 109.46955 * 180.02562 * 17 16 14 19 19 C 1.53006 * 117.49542 * 243.61414 * 18 17 16 20 20 C 1.52994 * 60.00356 * 252.51300 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 25 25 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 26 26 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 27 27 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 28 28 H 0.97006 * 119.99718 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.47503 * 59.99333 * 15 14 2 30 30 H 1.09007 * 109.47634 * 179.97438 * 15 14 2 31 31 H 1.09003 * 109.46925 * 299.99540 * 15 14 2 32 32 H 1.08999 * 109.46953 * 290.00368 * 16 14 2 33 33 H 1.08998 * 109.47126 * 50.00315 * 16 14 2 34 34 H 1.09002 * 109.46812 * 299.99289 * 17 16 14 35 35 H 1.08999 * 109.47748 * 59.99629 * 17 16 14 36 36 H 1.08991 * 115.55335 * 29.32443 * 18 17 16 37 37 H 1.08999 * 117.49836 * 0.02562 * 19 18 17 38 38 H 1.08995 * 117.49591 * 145.01937 * 19 18 17 39 39 H 1.09001 * 117.50002 * 252.51174 * 20 19 18 40 40 H 1.09000 * 117.50138 * 107.48773 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8052 3.2127 8 6 5.4184 -1.3604 2.8157 9 7 5.8567 -1.9804 3.8895 10 14 6.6263 -0.5278 1.6594 11 1 6.8307 0.8797 2.0867 12 1 7.9238 -1.2493 1.6954 13 1 6.0849 -0.5516 0.2769 14 7 2.0197 -0.6925 -1.1993 15 6 1.4343 -2.0354 -1.3078 16 6 1.7530 0.0972 -2.4090 17 6 2.4885 -0.5257 -3.5972 18 6 2.2112 0.2972 -4.8569 19 6 1.4584 -0.3900 -5.9981 20 6 2.9536 -0.0965 -6.1356 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7714 1.2056 26 1 3.9995 -1.0728 0.4261 27 1 3.8532 0.4370 1.3574 28 1 6.8075 -2.0062 4.0805 29 1 0.3491 -1.9549 -1.3693 30 1 1.8134 -2.5258 -2.2045 31 1 1.7059 -2.6221 -0.4301 32 1 0.6815 0.1053 -2.6087 33 1 2.1026 1.1189 -2.2604 34 1 3.5600 -0.5337 -3.3975 35 1 2.1390 -1.5474 -3.7459 36 1 2.0185 1.3573 -4.6930 37 1 1.1604 -1.4281 -5.8511 38 1 0.7701 0.2181 -6.5849 39 1 3.2491 0.7047 -6.8130 40 1 3.6397 -0.9416 -6.0792 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:35 Heat of formation + Delta-G solvation = -8.097889 kcal Electronic energy + Delta-G solvation = -15878.717125 eV Core-core repulsion = 13499.941340 eV Total energy + Delta-G solvation = -2378.775784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.87229 -38.21154 -35.51419 -33.87305 -31.60079 -30.09213 -27.23470 -27.15773 -23.73663 -23.17657 -22.34714 -21.21360 -20.40104 -18.77660 -17.24034 -16.62230 -16.32313 -15.98589 -15.39249 -15.09062 -14.89539 -14.48490 -14.22857 -14.02173 -13.40125 -13.34443 -12.99312 -12.84192 -12.77520 -12.40903 -12.33259 -12.07415 -11.97334 -11.81454 -11.64056 -11.41065 -11.34327 -11.17096 -10.91247 -10.71663 -10.70865 -9.01638 -8.26139 -6.28176 1.36413 1.38997 1.54033 2.40013 2.91786 3.07578 3.10562 3.83156 4.01394 4.03989 4.09497 4.19391 4.27665 4.40823 4.45036 4.57997 4.66284 4.69152 4.73081 4.74220 4.81376 4.91514 4.95502 5.02984 5.05994 5.13868 5.14967 5.25138 5.26134 5.29956 5.39009 5.47321 5.60440 5.70969 5.77181 6.29299 6.34849 6.35843 6.80442 7.36479 8.91009 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.006391 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.608271 B = 4380.025632 C = 5131.838115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.075 0.925 4 C -0.088 4.088 5 C 0.002 3.998 6 C -0.529 4.529 7 H 0.028 0.972 8 C 0.004 3.996 9 N -0.956 5.956 10 Si 0.950 3.050 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.248 1.248 14 N -0.551 5.551 15 C 0.021 3.979 16 C 0.063 3.937 17 C -0.081 4.081 18 C -0.157 4.157 19 C -0.176 4.176 20 C -0.183 4.183 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.025 0.975 27 H 0.006 0.994 28 H 0.265 0.735 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.487 5.482 -19.947 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 H 0.094 0.906 4 C -0.126 4.126 5 C -0.035 4.035 6 C -0.567 4.567 7 H 0.047 0.953 8 C -0.192 4.192 9 N -0.597 5.597 10 Si 0.773 3.227 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.171 1.171 14 N -0.275 5.275 15 C -0.127 4.127 16 C -0.065 4.065 17 C -0.119 4.119 18 C -0.176 4.176 19 C -0.213 4.213 20 C -0.220 4.220 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.833 5.384 -19.809 22.761 hybrid contribution -0.007 0.061 0.263 0.270 sum -9.840 5.445 -19.546 22.551 Atomic orbital electron populations 1.22364 0.96133 1.02308 1.02550 1.21715 0.93359 0.97576 0.89742 0.90634 1.21411 0.96094 0.99331 0.95765 1.19353 0.94396 0.95049 0.94712 1.21641 0.92582 1.33917 1.08609 0.95346 1.25984 1.00646 0.95816 0.96795 1.70082 1.15135 1.45852 1.28629 0.85657 0.77602 0.78673 0.80737 1.19306 1.21096 1.17118 1.62076 1.59536 1.03413 1.02460 1.22437 0.97511 0.90556 1.02155 1.22074 0.98335 0.97093 0.88961 1.21117 1.00230 0.98489 0.92084 1.22262 1.05821 0.99969 0.89563 1.23089 0.94693 1.01655 1.01849 1.23020 0.95132 1.03782 1.00109 0.92287 0.91585 0.91732 0.93213 0.93449 0.95630 0.97524 0.92674 0.94158 0.90904 0.92860 0.93895 0.91212 0.92559 0.91755 0.87448 0.88871 0.87912 0.87975 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 8.44 71.98 0.61 -3.71 16 2 C 0.08 2.64 2.31 44.92 0.10 2.74 16 3 H 0.08 2.37 7.93 -2.39 -0.02 2.35 16 4 C -0.09 -3.55 4.54 30.59 0.14 -3.41 16 5 C 0.00 0.12 3.93 29.85 0.12 0.23 16 6 C -0.53 -31.94 9.66 25.60 0.25 -31.69 16 7 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 8 C 0.00 0.22 5.47 84.65 0.46 0.68 16 9 N -0.96 -62.08 13.96 21.45 0.30 -61.78 16 10 Si 0.95 46.70 27.47 68.60 1.88 48.58 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 13 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 14 N -0.55 -16.61 4.17 -897.06 -3.74 -20.34 16 15 C 0.02 0.59 8.59 127.69 1.10 1.68 16 16 C 0.06 1.50 4.49 86.30 0.39 1.89 16 17 C -0.08 -1.80 5.43 30.59 0.17 -1.64 16 18 C -0.16 -2.84 5.74 -10.79 -0.06 -2.90 16 19 C -0.18 -2.70 10.18 30.59 0.31 -2.39 16 20 C -0.18 -3.00 10.25 30.60 0.31 -2.69 16 21 H 0.06 1.45 6.33 -2.39 -0.02 1.43 16 22 H 0.07 1.40 6.91 -2.39 -0.02 1.38 16 23 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.95 6.34 -2.39 -0.02 1.94 16 26 H 0.03 1.28 6.81 -2.39 -0.02 1.26 16 27 H 0.01 0.31 7.57 -2.39 -0.02 0.30 16 28 H 0.26 16.01 8.31 -92.70 -0.77 15.24 16 29 H 0.04 0.96 6.21 -2.39 -0.01 0.95 16 30 H 0.07 1.81 6.30 -2.38 -0.02 1.80 16 31 H 0.05 1.71 6.37 -2.39 -0.02 1.70 16 32 H 0.04 0.92 7.06 -2.39 -0.02 0.90 16 33 H 0.07 1.66 7.93 -2.39 -0.02 1.64 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.39 6.21 -2.39 -0.01 1.38 16 36 H 0.11 1.83 8.07 -2.39 -0.02 1.81 16 37 H 0.09 1.42 8.03 -2.39 -0.02 1.40 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -67.32 308.58 3.26 -64.06 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.92 Total: 10.69 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 3.89 Total: -41.21 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.44 Total: -82.12 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.88 Total: 48.58 kcal Total: -67.32 3.26 -64.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.961 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds