Wall clock time and date at job start Mon Mar 30 2020 17:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47088 * 119.99666 * 2 1 3 5 5 C 1.53002 * 109.46525 * 185.00110 * 4 2 1 6 6 C 1.50704 * 109.46650 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00388 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00033 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99508 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00097 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47177 * 90.00263 * 10 8 6 12 12 H 1.48506 * 109.47254 * 210.00317 * 10 8 6 13 13 H 1.48504 * 109.47380 * 329.99915 * 10 8 6 14 14 N 1.46894 * 109.47037 * 240.00222 * 2 1 3 15 15 C 1.48531 * 110.99928 * 311.02122 * 14 2 1 16 16 C 1.54939 * 103.22975 * 159.72355 * 15 14 2 17 17 C 1.54597 * 102.91811 * 322.58738 * 16 15 14 18 18 C 1.52997 * 110.31010 * 263.03718 * 17 16 15 19 19 C 1.53004 * 110.30790 * 140.87312 * 17 16 15 20 20 C 1.47900 * 111.00476 * 68.42133 * 14 2 1 21 21 H 1.09001 * 109.46936 * 187.75083 * 1 2 3 22 22 H 1.09001 * 109.47419 * 307.74364 * 1 2 3 23 23 H 1.08992 * 109.47678 * 67.74886 * 1 2 3 24 24 H 1.09001 * 109.47524 * 304.99944 * 4 2 1 25 25 H 1.08995 * 109.46850 * 65.00498 * 4 2 1 26 26 H 1.09000 * 109.47477 * 299.99737 * 5 4 2 27 27 H 1.08995 * 109.47239 * 60.00626 * 5 4 2 28 28 H 0.97003 * 119.99409 * 179.97438 * 9 8 6 29 29 H 1.08997 * 110.66958 * 278.15948 * 15 14 2 30 30 H 1.09007 * 110.66886 * 41.28957 * 15 14 2 31 31 H 1.08994 * 110.72740 * 204.23068 * 16 15 14 32 32 H 1.09000 * 110.87457 * 81.01162 * 16 15 14 33 33 H 1.09000 * 109.47440 * 175.71374 * 18 17 16 34 34 H 1.09000 * 109.47093 * 295.72247 * 18 17 16 35 35 H 1.09003 * 109.46834 * 55.72076 * 18 17 16 36 36 H 1.09002 * 109.47171 * 304.28078 * 19 17 16 37 37 H 1.08993 * 109.47150 * 64.28222 * 19 17 16 38 38 H 1.09000 * 109.47271 * 184.28668 * 19 17 16 39 39 H 1.09003 * 109.91181 * 333.50463 * 20 14 2 40 40 H 1.08991 * 109.91847 * 94.60340 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6131 1.3136 6 6 4.0673 -1.3240 2.5438 7 1 3.3690 -1.8051 3.2126 8 6 5.4187 -1.3611 2.8150 9 7 6.2691 -0.7757 2.0004 10 14 6.0414 -2.2416 4.3402 11 1 6.3208 -3.6627 4.0120 12 1 7.2880 -1.5887 4.8144 13 1 5.0104 -2.1734 5.4069 14 7 2.0197 -0.6924 -1.1994 15 6 1.3390 -2.0010 -1.3737 16 6 1.5587 -2.3179 -2.8743 17 6 1.4311 -0.9299 -3.5430 18 6 0.0159 -0.7318 -4.0896 19 6 2.4603 -0.7847 -4.6657 20 6 1.7176 0.0850 -2.4208 21 1 -0.3633 -1.0183 0.1386 22 1 -0.3634 0.6291 0.8126 23 1 -0.3634 0.3891 -0.9510 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7714 1.2056 26 1 3.9995 -1.0727 0.4259 27 1 3.8532 0.4371 1.3573 28 1 7.2198 -0.8015 2.1914 29 1 1.8036 -2.7628 -0.7476 30 1 0.2755 -1.9143 -1.1505 31 1 0.7884 -2.9956 -3.2423 32 1 2.5510 -2.7369 -3.0416 33 1 -0.0813 0.2775 -4.4894 34 1 -0.1722 -1.4563 -4.8820 35 1 -0.7071 -0.8757 -3.2867 36 1 3.4592 -0.9658 -4.2687 37 1 2.2451 -1.5085 -5.4517 38 1 2.4101 0.2237 -5.0766 39 1 0.8415 0.7119 -2.2546 40 1 2.5731 0.7057 -2.6869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:51 Heat of formation + Delta-G solvation = -19.187843 kcal Electronic energy + Delta-G solvation = -16382.812592 eV Core-core repulsion = 14003.555911 eV Total energy + Delta-G solvation = -2379.256681 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63852 -35.73936 -33.02831 -31.16594 -29.56240 -28.52915 -27.30126 -25.45152 -24.52079 -22.39609 -20.84178 -19.14914 -18.52125 -16.12950 -15.69038 -15.27752 -14.44407 -14.23460 -13.90485 -13.46304 -13.24586 -13.05340 -12.57762 -12.38345 -12.30087 -11.81964 -11.65549 -11.45594 -11.23570 -11.15530 -10.92550 -10.76002 -10.55702 -10.42086 -10.41237 -10.25696 -10.02844 -9.57126 -9.15077 -8.84900 -8.20186 -7.73573 -5.85323 -3.86581 3.39072 3.44940 3.48276 4.43511 4.56440 4.66392 4.82387 4.95964 5.35655 5.38902 5.49371 5.50091 5.52326 5.57730 5.67138 5.69802 5.73265 5.77961 5.90680 5.94265 6.01686 6.13396 6.17609 6.25404 6.33114 6.35048 6.40160 6.48868 6.53809 6.72424 6.91158 7.34268 7.45030 7.64953 7.88430 8.11493 8.26937 8.60729 9.22596 9.75831 11.25757 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038318 B = 0.006148 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.543700 B = 4553.236032 C = 4863.542780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.071 3.929 3 H 0.075 0.925 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.494 5.494 15 C 0.030 3.970 16 C -0.114 4.114 17 C -0.077 4.077 18 C -0.136 4.136 19 C -0.135 4.135 20 C 0.040 3.960 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.008 0.992 28 H 0.258 0.742 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 0.102 -11.611 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.037 4.037 3 H 0.093 0.907 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.217 5.217 15 C -0.098 4.098 16 C -0.152 4.152 17 C -0.077 4.077 18 C -0.194 4.194 19 C -0.192 4.192 20 C -0.088 4.088 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.184 0.089 -11.549 16.077 hybrid contribution -0.459 -0.290 0.820 0.983 sum -11.643 -0.201 -10.730 15.834 Atomic orbital electron populations 1.22516 0.98972 1.01768 1.01096 1.21990 0.91062 0.98685 0.91977 0.90684 1.21640 1.00721 0.98201 0.93025 1.18999 0.88159 0.96629 0.96997 1.21349 0.91841 1.33975 1.08505 0.93157 1.24998 0.97137 0.95790 0.96491 1.69988 1.02139 1.44315 1.36976 0.86687 0.78273 0.79826 0.83725 1.20805 1.21354 1.20052 1.64964 1.53385 1.02399 1.00947 1.23296 0.97207 0.93281 0.95990 1.22616 1.02021 0.95594 0.95009 1.21395 0.95177 0.95795 0.95381 1.21886 0.95697 1.01295 1.00486 1.21842 0.99008 1.01050 0.97311 1.23030 0.99836 0.95824 0.90098 0.92396 0.92442 0.93315 0.93498 0.93526 0.94969 0.97337 0.93258 0.89890 0.93554 0.91753 0.90692 0.92819 0.92750 0.92923 0.91884 0.93043 0.92964 0.93974 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.17 37.16 0.30 -2.37 16 2 C 0.07 1.27 2.27 -67.71 -0.15 1.12 16 3 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 4 C -0.10 -2.10 4.63 -26.73 -0.12 -2.22 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.83 13.29 55.43 0.74 -27.10 16 10 Si 0.89 22.30 29.54 -169.99 -5.02 17.27 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 N -0.49 -8.59 4.69 -222.50 -1.04 -9.63 16 15 C 0.03 0.46 5.57 -1.90 -0.01 0.45 16 16 C -0.11 -1.49 6.16 -24.87 -0.15 -1.65 16 17 C -0.08 -0.94 0.97 -153.15 -0.15 -1.09 16 18 C -0.14 -1.39 8.21 37.16 0.31 -1.09 16 19 C -0.13 -1.52 8.24 37.16 0.31 -1.21 16 20 C 0.04 0.58 5.76 -2.76 -0.02 0.57 16 21 H 0.06 0.82 6.41 -51.93 -0.33 0.49 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.64 6.28 -51.93 -0.33 0.32 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.99 7.10 -51.93 -0.37 0.62 16 26 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 29 H 0.08 1.41 7.65 -51.93 -0.40 1.02 16 30 H 0.05 0.66 5.46 -51.92 -0.28 0.38 16 31 H 0.06 0.72 7.85 -51.93 -0.41 0.32 16 32 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.04 0.58 5.56 -51.93 -0.29 0.29 16 40 H 0.07 1.14 7.69 -51.93 -0.40 0.74 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -30.83 305.23 -8.34 -39.18 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.38 Total: -3.54 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -0.24 Total: -20.78 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.31 Total: -36.73 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.83 -8.34 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.990 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds