Wall clock time and date at job start Mon Mar 30 2020 17:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 H 1.09000 * 110.53750 * 303.83720 * 3 2 1 5 5 C 1.54884 * 110.48843 * 66.45505 * 3 2 1 6 6 C 1.54886 * 102.75158 * 156.61679 * 5 3 2 7 7 C 1.54262 * 104.19545 * 322.05961 * 6 5 3 8 8 H 1.09003 * 110.03032 * 264.27557 * 7 6 5 9 9 N 1.46894 * 110.03581 * 142.89130 * 7 6 5 10 10 C 1.46896 * 111.00210 * 181.28729 * 9 7 6 11 11 C 1.53001 * 109.47107 * 300.65661 * 10 9 7 12 12 C 1.46908 * 111.00121 * 57.33246 * 9 7 6 13 13 C 1.50692 * 109.47416 * 190.00142 * 12 9 7 14 14 H 1.08006 * 120.00359 * 359.97438 * 13 12 9 15 15 C 1.37878 * 120.00148 * 180.02562 * 13 12 9 16 16 N 1.31513 * 120.00019 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99836 * 359.97438 * 15 13 12 18 18 H 1.48491 * 109.47281 * 270.00247 * 17 15 13 19 19 H 1.48499 * 109.46737 * 30.00686 * 17 15 13 20 20 H 1.48504 * 109.46732 * 150.00025 * 17 15 13 21 21 C 1.53876 * 106.60200 * 23.60594 * 7 6 5 22 22 H 1.09001 * 109.47098 * 59.99880 * 1 2 3 23 23 H 1.09004 * 109.47468 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46985 * 300.00369 * 1 2 3 25 25 H 1.08998 * 109.46985 * 239.99631 * 2 1 3 26 26 H 1.08996 * 109.46728 * 119.99860 * 2 1 3 27 27 H 1.09000 * 110.75782 * 38.30275 * 5 3 2 28 28 H 1.09006 * 110.91233 * 275.01108 * 5 3 2 29 29 H 1.08997 * 110.48956 * 203.37318 * 6 5 3 30 30 H 1.09003 * 110.48420 * 80.73222 * 6 5 3 31 31 H 1.08994 * 109.47382 * 60.66031 * 10 9 7 32 32 H 1.09004 * 109.47220 * 180.66263 * 10 9 7 33 33 H 1.09002 * 109.47374 * 178.99107 * 11 10 9 34 34 H 1.09000 * 109.47446 * 298.99815 * 11 10 9 35 35 H 1.09002 * 109.46829 * 58.99471 * 11 10 9 36 36 H 1.08997 * 109.47140 * 69.99985 * 12 9 7 37 37 H 1.09003 * 109.46459 * 310.00209 * 12 9 7 38 38 H 0.97005 * 119.99961 * 180.02562 * 16 15 13 39 39 H 1.08993 * 110.03231 * 119.28215 * 21 7 6 40 40 H 1.09000 * 110.03682 * 240.71824 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6316 1.9925 -0.8478 5 6 1.6742 2.1468 1.3301 6 6 2.7274 3.2791 1.4182 7 6 4.0192 2.6377 0.8707 8 1 4.6296 2.2664 1.6940 9 7 4.7769 3.6222 0.0870 10 6 5.9975 3.0246 -0.4705 11 6 6.8761 2.5031 0.6684 12 6 5.0929 4.8077 0.8950 13 6 5.6473 5.8895 0.0044 14 1 5.7546 5.7140 -1.0558 15 6 6.0185 7.1032 0.5432 16 7 6.5019 8.0475 -0.2342 17 14 5.8335 7.4067 2.3771 18 1 4.4902 7.9769 2.6515 19 1 5.9856 6.1235 3.1089 20 1 6.8780 8.3609 2.8287 21 6 3.5821 1.4699 -0.0310 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.7739 1.4603 2.1708 28 1 0.6661 2.5593 1.2875 29 1 2.8657 3.5918 2.4532 30 1 2.4300 4.1257 0.7994 31 1 5.7294 2.1991 -1.1298 32 1 6.5454 3.7782 -1.0362 33 1 7.7734 2.0436 0.2539 34 1 7.1589 3.3317 1.3177 35 1 6.3219 1.7625 1.2449 36 1 5.8325 4.5453 1.6514 37 1 4.1866 5.1672 1.3824 38 1 6.7634 8.9012 0.1450 39 1 3.9322 1.6338 -1.0501 40 1 3.9801 0.5312 0.3545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173280362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:21:57 Heat of formation + Delta-G solvation = -36.805506 kcal Electronic energy + Delta-G solvation = -16448.298741 eV Core-core repulsion = 14068.278101 eV Total energy + Delta-G solvation = -2380.020640 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37184 -37.53784 -34.70743 -33.46685 -31.38642 -29.76524 -28.96321 -26.85728 -24.77043 -23.22217 -22.47981 -20.75686 -19.64956 -18.90252 -17.26090 -16.53080 -16.40624 -15.77919 -15.39397 -14.89342 -14.59668 -14.46987 -14.19153 -13.90994 -13.47653 -13.32188 -13.02991 -12.80595 -12.69108 -12.46963 -12.15477 -11.94858 -11.86981 -11.83139 -11.59215 -11.44174 -11.35620 -11.31716 -11.16690 -11.10562 -10.75830 -8.86667 -8.27738 -6.29242 1.32058 1.33013 1.43700 2.33386 3.05799 3.29854 3.67467 3.82228 3.98036 4.23334 4.34679 4.40551 4.48607 4.54047 4.57594 4.61835 4.71468 4.75429 4.78905 4.86237 4.91208 4.99320 5.06088 5.09383 5.13485 5.16064 5.23211 5.26837 5.34323 5.35763 5.41760 5.46606 5.53335 5.62546 5.67555 6.07286 6.48470 6.75166 6.79408 7.33968 8.89186 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035459 B = 0.007030 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.465562 B = 3981.767273 C = 4324.847402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.086 4.086 4 H 0.062 0.938 5 C -0.105 4.105 6 C -0.123 4.123 7 C 0.071 3.929 8 H 0.036 0.964 9 N -0.535 5.535 10 C 0.057 3.943 11 C -0.178 4.178 12 C 0.170 3.830 13 C -0.510 4.510 14 H 0.036 0.964 15 C 0.009 3.991 16 N -0.949 5.949 17 Si 0.942 3.058 18 H -0.265 1.265 19 H -0.254 1.254 20 H -0.281 1.281 21 C -0.106 4.106 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.064 0.936 36 H -0.011 1.011 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.062 0.938 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.104 -17.037 4.656 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.104 4.104 4 H 0.081 0.919 5 C -0.143 4.143 6 C -0.161 4.161 7 C -0.037 4.037 8 H 0.054 0.946 9 N -0.259 5.259 10 C -0.071 4.071 11 C -0.237 4.237 12 C 0.043 3.957 13 C -0.548 4.548 14 H 0.054 0.946 15 C -0.188 4.188 16 N -0.591 5.591 17 Si 0.765 3.235 18 H -0.190 1.190 19 H -0.178 1.178 20 H -0.207 1.207 21 C -0.143 4.143 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.006 0.994 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.337 -16.717 4.259 19.615 hybrid contribution 0.920 0.797 1.048 1.607 sum -8.417 -15.919 5.307 18.773 Atomic orbital electron populations 1.21775 0.95366 1.01867 1.01836 1.21517 0.96271 0.94787 1.02167 1.21942 0.94270 0.96625 0.97612 0.91910 1.22478 0.97852 0.96267 0.97684 1.22466 0.95155 0.98828 0.99672 1.22411 0.94265 0.92534 0.94479 0.94600 1.62263 1.21175 1.06247 1.36217 1.21999 0.90002 0.98144 0.96941 1.22279 1.00895 1.00509 1.00011 1.19923 0.94426 0.89050 0.92290 1.21292 1.40568 0.97868 0.95108 0.94564 1.25790 0.94637 0.95652 1.02741 1.70051 1.45521 1.05910 1.37591 0.85795 0.78584 0.78824 0.80273 1.19005 1.17758 1.20685 1.22235 0.96119 0.96416 0.99566 0.93173 0.92002 0.92517 0.91879 0.91409 0.90403 0.90970 0.92568 0.92713 0.89896 0.93360 0.91043 0.94687 0.91717 0.99384 0.95602 0.92540 0.91939 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.76 71.98 0.70 -1.66 16 2 C -0.11 -1.94 5.29 30.60 0.16 -1.78 16 3 C -0.09 -1.98 2.90 -9.72 -0.03 -2.01 16 4 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 5 C -0.11 -2.45 5.51 31.88 0.18 -2.28 16 6 C -0.12 -3.88 5.01 31.67 0.16 -3.72 16 7 C 0.07 2.36 2.24 45.64 0.10 2.46 16 8 H 0.04 1.19 6.30 -2.39 -0.02 1.17 16 9 N -0.54 -22.44 4.47 -871.31 -3.89 -26.33 16 10 C 0.06 2.21 5.59 86.30 0.48 2.69 16 11 C -0.18 -6.03 9.25 71.98 0.67 -5.37 16 12 C 0.17 8.35 3.41 85.55 0.29 8.64 16 13 C -0.51 -30.16 9.00 25.60 0.23 -29.93 16 14 H 0.04 2.39 7.37 -2.91 -0.02 2.37 16 15 C 0.01 0.52 5.47 84.66 0.46 0.98 16 16 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 17 Si 0.94 45.11 27.47 68.60 1.88 46.99 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.25 -11.46 6.54 99.48 0.65 -10.80 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 C -0.11 -2.80 5.53 31.32 0.17 -2.63 16 22 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.87 7.39 -2.39 -0.02 0.85 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 27 H 0.08 1.58 8.02 -2.39 -0.02 1.56 16 28 H 0.07 1.55 8.01 -2.38 -0.02 1.53 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 2.01 7.63 -2.39 -0.02 1.99 16 31 H 0.08 2.73 6.44 -2.39 -0.02 2.72 16 32 H 0.05 2.20 6.74 -2.38 -0.02 2.19 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.03 1.36 6.44 -2.39 -0.02 1.34 16 35 H 0.06 1.93 6.34 -2.39 -0.02 1.91 16 36 H -0.01 -0.56 5.24 -2.39 -0.01 -0.57 16 37 H 0.03 1.27 5.90 -2.39 -0.01 1.25 16 38 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 39 H 0.06 1.81 6.48 -2.39 -0.02 1.80 16 40 H 0.08 1.71 7.84 -2.39 -0.02 1.69 16 Total: -1.00 -65.74 297.00 2.79 -62.95 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.92 Total: 11.16 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.58 Total: -34.60 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -3.59 Total: -86.50 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -65.74 2.79 -62.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173280362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.142 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds