Wall clock time and date at job start Mon Mar 30 2020 17:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47470 * 2 1 4 4 H 1.09001 * 109.47043 * 55.00230 * 3 2 1 5 5 C 1.52996 * 109.47222 * 175.00346 * 3 2 1 6 6 N 1.46908 * 109.46958 * 295.00239 * 3 2 1 7 7 C 1.46897 * 110.99448 * 154.99536 * 6 3 2 8 8 C 1.53002 * 109.46883 * 155.00052 * 7 6 3 9 9 C 1.52997 * 109.47415 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47164 * 300.00027 * 9 8 7 11 11 C 1.50697 * 109.47239 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00039 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00021 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99560 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00122 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47178 * 60.00416 * 15 13 11 17 17 H 1.48496 * 109.47539 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47420 * 300.00642 * 15 13 11 19 19 C 1.52999 * 109.46626 * 59.99702 * 10 9 8 20 20 C 1.52996 * 109.47593 * 275.00010 * 7 6 3 21 21 H 1.08999 * 109.47434 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46216 * 299.99683 * 1 2 3 23 23 H 1.08994 * 109.47007 * 59.99377 * 1 2 3 24 24 H 1.09012 * 109.46583 * 240.00303 * 2 1 3 25 25 H 1.08996 * 109.47486 * 120.00844 * 2 1 3 26 26 H 1.08992 * 109.47286 * 300.00492 * 5 3 2 27 27 H 1.09004 * 109.47023 * 60.00485 * 5 3 2 28 28 H 1.09004 * 109.46969 * 179.97438 * 5 3 2 29 29 H 1.00892 * 111.00485 * 278.95479 * 6 3 2 30 30 H 1.08996 * 109.47600 * 35.00606 * 7 6 3 31 31 H 1.09000 * 109.46986 * 60.00080 * 8 7 6 32 32 H 1.09001 * 109.47601 * 300.00803 * 8 7 6 33 33 H 1.09001 * 109.46922 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47140 * 59.99976 * 9 8 7 35 35 H 1.09000 * 109.47050 * 300.00004 * 10 9 8 36 36 H 0.97002 * 119.99397 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47160 * 60.00369 * 19 10 9 38 38 H 1.09002 * 109.46719 * 180.02562 * 19 10 9 39 39 H 1.09000 * 109.47054 * 300.00396 * 20 7 6 40 40 H 1.09001 * 109.46997 * 60.00129 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1256 6 7 1.6514 2.0993 -1.2553 7 6 1.5726 3.5562 -1.0845 8 6 1.7890 4.2404 -2.4358 9 6 1.7076 5.7578 -2.2580 10 6 0.3291 6.1340 -1.7108 11 6 0.2491 7.6285 -1.5350 12 1 1.0965 8.2482 -1.7887 13 6 -0.9063 8.2050 -1.0514 14 7 -1.9383 7.4504 -0.7430 15 14 -1.0057 10.0576 -0.8342 16 1 -0.7953 10.7217 -2.1457 17 1 -2.3435 10.4227 -0.3030 18 1 0.0428 10.5012 0.1191 19 6 0.1128 5.4497 -0.3595 20 6 0.1940 3.9318 -0.5376 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 3.8533 0.9568 1.0569 27 1 3.9994 0.9052 -0.7163 28 1 3.9283 2.4719 0.1252 29 1 2.2852 1.8564 -2.0018 30 1 2.3422 3.8822 -0.3849 31 1 1.0194 3.9144 -3.1355 32 1 2.7711 3.9728 -2.8256 33 1 1.8613 6.2452 -3.2208 34 1 2.4774 6.0835 -1.5584 35 1 -0.4408 5.8083 -2.4103 36 1 -2.7513 7.8560 -0.4031 37 1 0.8827 5.7754 0.3400 38 1 -0.8694 5.7173 0.0301 39 1 -0.5756 3.6058 -1.2373 40 1 0.0399 3.4444 0.4250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:05 Heat of formation + Delta-G solvation = -39.839072 kcal Electronic energy + Delta-G solvation = -16348.617116 eV Core-core repulsion = 13968.464930 eV Total energy + Delta-G solvation = -2380.152185 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.52489 -36.22123 -33.09060 -31.44401 -29.74876 -29.49791 -27.40582 -24.28026 -23.30113 -21.79896 -20.54314 -19.97793 -18.61574 -16.27269 -15.59258 -14.93422 -14.51097 -14.24499 -13.56342 -13.48758 -13.15052 -12.90878 -12.71237 -12.49688 -12.07056 -11.66042 -11.40751 -11.20356 -11.05197 -10.94102 -10.83354 -10.64816 -10.51566 -10.42471 -10.19258 -10.08066 -9.77558 -9.26891 -8.84233 -8.59641 -8.23370 -8.00477 -5.91593 -3.97766 3.35014 3.39748 3.42266 4.42760 4.49896 4.89133 5.16579 5.31939 5.37481 5.46177 5.51772 5.58004 5.65996 5.74125 5.87334 5.96337 6.05869 6.10590 6.15971 6.27988 6.32050 6.43105 6.51072 6.51881 6.60051 6.70526 6.78650 6.82381 7.02215 7.21986 7.33734 7.50601 7.64538 7.74145 7.83222 8.10553 8.24769 8.54596 9.06374 9.66370 11.13840 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045034 B = 0.006067 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.600762 B = 4614.157253 C = 4907.543122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.080 3.920 4 H 0.077 0.923 5 C -0.181 4.181 6 N -0.680 5.680 7 C 0.092 3.908 8 C -0.115 4.115 9 C -0.106 4.106 10 C 0.049 3.951 11 C -0.513 4.513 12 H 0.052 0.948 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.109 4.109 20 C -0.100 4.100 21 H 0.041 0.959 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.332 0.668 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.025 0.975 36 H 0.259 0.741 37 H 0.029 0.971 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.158 -12.018 1.088 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.030 4.030 4 H 0.095 0.905 5 C -0.240 4.240 6 N -0.311 5.311 7 C -0.017 4.017 8 C -0.153 4.153 9 C -0.144 4.144 10 C 0.031 3.969 11 C -0.552 4.552 12 H 0.070 0.930 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.148 4.148 20 C -0.138 4.138 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.289 -12.100 1.258 13.695 hybrid contribution 0.941 1.264 0.258 1.597 sum 7.230 -10.837 1.517 13.115 Atomic orbital electron populations 1.21656 0.95327 1.00283 1.02860 1.21479 0.96771 0.95525 1.00816 1.21631 0.92490 0.95344 0.93546 0.90464 1.22510 0.97960 1.01788 1.01781 1.60684 1.55231 1.09151 1.05988 1.21591 0.98108 0.85204 0.96798 1.21711 0.99649 0.97687 0.96276 1.21597 1.00793 0.92148 0.99876 1.18642 0.90684 0.94609 0.92968 1.21212 0.98967 0.92145 1.42845 0.92986 1.24962 0.95812 0.97653 0.95560 1.69875 1.03712 1.34620 1.44708 0.86725 0.77015 0.86231 0.78393 1.20376 1.21357 1.20419 1.21626 1.03041 0.90342 0.99767 1.21600 0.95007 0.98361 0.98812 0.93989 0.93355 0.91132 0.92423 0.92659 0.92499 0.92780 0.92708 0.84997 0.94671 0.91864 0.94125 0.93461 0.93687 0.95676 0.93080 0.95256 0.89052 0.92408 0.94423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.80 37.16 0.36 -1.38 16 2 C -0.11 -1.22 5.61 -26.73 -0.15 -1.37 16 3 C 0.08 1.02 2.40 -67.71 -0.16 0.86 16 4 H 0.08 1.11 7.11 -51.93 -0.37 0.74 16 5 C -0.18 -2.03 9.15 37.16 0.34 -1.69 16 6 N -0.68 -9.76 5.51 -99.74 -0.55 -10.31 16 7 C 0.09 1.57 2.30 -67.71 -0.16 1.42 16 8 C -0.12 -2.03 5.19 -26.73 -0.14 -2.17 16 9 C -0.11 -2.22 5.14 -26.73 -0.14 -2.36 16 10 C 0.05 1.24 2.10 -91.77 -0.19 1.04 16 11 C -0.51 -14.26 8.56 -34.44 -0.29 -14.55 16 12 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 15 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.11 -2.60 4.98 -26.71 -0.13 -2.73 16 20 C -0.10 -1.98 5.41 -26.71 -0.14 -2.13 16 21 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16 24 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.05 0.66 7.43 -51.93 -0.39 0.28 16 29 H 0.33 4.36 8.09 -39.30 -0.32 4.04 16 30 H 0.04 0.63 7.11 -51.93 -0.37 0.26 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.04 0.71 7.43 -51.93 -0.39 0.33 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -27.63 306.49 -8.81 -36.43 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.58 Total: 1.32 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -0.90 Total: -23.45 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.08 Total: -35.39 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.63 -8.81 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.405 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds