Wall clock time and date at job start Mon Mar 30 2020 17:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47470 * 2 1 4 4 H 1.09001 * 109.47043 * 55.00230 * 3 2 1 5 5 C 1.52996 * 109.47222 * 175.00346 * 3 2 1 6 6 N 1.46908 * 109.46958 * 295.00239 * 3 2 1 7 7 C 1.46897 * 110.99448 * 154.99536 * 6 3 2 8 8 C 1.53002 * 109.46883 * 155.00052 * 7 6 3 9 9 C 1.52997 * 109.47415 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47164 * 300.00027 * 9 8 7 11 11 C 1.50697 * 109.47239 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00039 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00021 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99560 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00122 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47178 * 60.00416 * 15 13 11 17 17 H 1.48496 * 109.47539 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47420 * 300.00642 * 15 13 11 19 19 C 1.52999 * 109.46626 * 59.99702 * 10 9 8 20 20 C 1.52996 * 109.47593 * 275.00010 * 7 6 3 21 21 H 1.08999 * 109.47434 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46216 * 299.99683 * 1 2 3 23 23 H 1.08994 * 109.47007 * 59.99377 * 1 2 3 24 24 H 1.09012 * 109.46583 * 240.00303 * 2 1 3 25 25 H 1.08996 * 109.47486 * 120.00844 * 2 1 3 26 26 H 1.08992 * 109.47286 * 300.00492 * 5 3 2 27 27 H 1.09004 * 109.47023 * 60.00485 * 5 3 2 28 28 H 1.09004 * 109.46969 * 179.97438 * 5 3 2 29 29 H 1.00892 * 111.00485 * 278.95479 * 6 3 2 30 30 H 1.08996 * 109.47600 * 35.00606 * 7 6 3 31 31 H 1.09000 * 109.46986 * 60.00080 * 8 7 6 32 32 H 1.09001 * 109.47601 * 300.00803 * 8 7 6 33 33 H 1.09001 * 109.46922 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47140 * 59.99976 * 9 8 7 35 35 H 1.09000 * 109.47050 * 300.00004 * 10 9 8 36 36 H 0.97002 * 119.99397 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47160 * 60.00369 * 19 10 9 38 38 H 1.09002 * 109.46719 * 180.02562 * 19 10 9 39 39 H 1.09000 * 109.47054 * 300.00396 * 20 7 6 40 40 H 1.09001 * 109.46997 * 60.00129 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1256 6 7 1.6514 2.0993 -1.2553 7 6 1.5726 3.5562 -1.0845 8 6 1.7890 4.2404 -2.4358 9 6 1.7076 5.7578 -2.2580 10 6 0.3291 6.1340 -1.7108 11 6 0.2491 7.6285 -1.5350 12 1 1.0965 8.2482 -1.7887 13 6 -0.9063 8.2050 -1.0514 14 7 -1.9383 7.4504 -0.7430 15 14 -1.0057 10.0576 -0.8342 16 1 -0.7953 10.7217 -2.1457 17 1 -2.3435 10.4227 -0.3030 18 1 0.0428 10.5012 0.1191 19 6 0.1128 5.4497 -0.3595 20 6 0.1940 3.9318 -0.5376 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 3.8533 0.9568 1.0569 27 1 3.9994 0.9052 -0.7163 28 1 3.9283 2.4719 0.1252 29 1 2.2852 1.8564 -2.0018 30 1 2.3422 3.8822 -0.3849 31 1 1.0194 3.9144 -3.1355 32 1 2.7711 3.9728 -2.8256 33 1 1.8613 6.2452 -3.2208 34 1 2.4774 6.0835 -1.5584 35 1 -0.4408 5.8083 -2.4103 36 1 -2.7513 7.8560 -0.4031 37 1 0.8827 5.7754 0.3400 38 1 -0.8694 5.7173 0.0301 39 1 -0.5756 3.6058 -1.2373 40 1 0.0399 3.4444 0.4250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:04 Heat of formation + Delta-G solvation = -55.021063 kcal Electronic energy + Delta-G solvation = -16349.275456 eV Core-core repulsion = 13968.464930 eV Total energy + Delta-G solvation = -2380.810526 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95452 -37.60915 -34.87970 -32.94811 -31.39993 -30.77099 -28.91103 -26.10614 -24.37456 -23.40878 -22.13361 -21.15172 -20.34314 -18.38509 -16.88616 -16.54970 -15.98880 -15.58205 -14.95156 -14.68703 -14.61094 -14.49604 -14.07669 -13.83122 -13.63771 -13.05991 -12.85460 -12.82207 -12.58684 -12.53402 -12.20157 -12.12693 -11.96010 -11.84032 -11.67125 -11.58819 -11.40414 -11.13668 -10.72233 -10.48493 -10.34436 -9.19137 -8.05632 -6.20178 1.41274 1.42530 1.50216 2.44368 3.19525 3.27421 3.91705 4.01915 4.10609 4.26522 4.36481 4.47364 4.59112 4.61361 4.67847 4.76383 4.83839 4.86821 4.88646 4.92663 5.00400 5.07505 5.17374 5.19501 5.21343 5.27175 5.35582 5.44517 5.47066 5.51312 5.61175 5.63851 5.73269 6.05735 6.20398 6.28873 6.43364 6.68168 6.93083 7.47750 8.98080 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045034 B = 0.006067 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.600762 B = 4614.157253 C = 4907.543122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C 0.078 3.922 4 H 0.058 0.942 5 C -0.175 4.175 6 N -0.680 5.680 7 C 0.105 3.895 8 C -0.107 4.107 9 C -0.100 4.100 10 C 0.045 3.955 11 C -0.537 4.537 12 H 0.051 0.949 13 C 0.011 3.989 14 N -0.918 5.918 15 Si 0.952 3.048 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.100 4.100 20 C -0.088 4.088 21 H 0.057 0.943 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.345 0.655 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.046 0.954 35 H -0.009 1.009 36 H 0.259 0.741 37 H 0.022 0.978 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -12.995 1.039 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.032 4.032 4 H 0.076 0.924 5 C -0.234 4.234 6 N -0.312 5.312 7 C -0.005 4.005 8 C -0.145 4.145 9 C -0.138 4.138 10 C 0.027 3.973 11 C -0.575 4.575 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.557 5.557 15 Si 0.778 3.222 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.139 4.139 20 C -0.127 4.127 21 H 0.076 0.924 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.164 0.836 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.009 0.991 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.998 -13.091 1.201 15.387 hybrid contribution 0.379 1.546 0.281 1.617 sum 8.377 -11.544 1.482 14.340 Atomic orbital electron populations 1.21637 0.96268 1.00844 1.01329 1.21453 0.95834 0.94580 1.02153 1.21686 0.93815 0.95790 0.91910 0.92376 1.22433 0.96298 1.01512 1.03159 1.60549 1.56209 1.07074 1.07337 1.21286 0.95775 0.87165 0.96260 1.21616 1.01382 0.94989 0.96495 1.21466 0.97942 0.94860 0.99538 1.18622 0.92215 0.93587 0.92889 1.21624 0.99116 0.93774 1.42949 0.93112 1.25759 0.95512 1.02198 0.95280 1.70032 1.04106 1.36377 1.45210 0.85707 0.77139 0.80801 0.78583 1.19644 1.20994 1.19682 1.21409 1.00620 0.93116 0.98747 1.21417 0.96812 0.95417 0.99028 0.92429 0.94344 0.93171 0.91394 0.90908 0.91168 0.91363 0.93787 0.83590 0.94741 0.92466 0.90703 0.93398 0.93539 0.99126 0.93159 0.95870 0.92635 0.93930 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.80 71.98 0.71 -2.56 16 2 C -0.10 -2.03 5.61 30.59 0.17 -1.86 16 3 C 0.08 1.81 2.40 44.91 0.11 1.92 16 4 H 0.06 1.59 7.11 -2.39 -0.02 1.57 16 5 C -0.18 -3.37 9.15 71.98 0.66 -2.72 16 6 N -0.68 -18.15 5.51 -469.47 -2.59 -20.74 16 7 C 0.10 3.45 2.30 44.92 0.10 3.56 16 8 C -0.11 -3.59 5.19 30.59 0.16 -3.43 16 9 C -0.10 -4.15 5.14 30.60 0.16 -3.99 16 10 C 0.05 2.33 2.10 -11.54 -0.02 2.31 16 11 C -0.54 -30.39 8.56 25.60 0.22 -30.17 16 12 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 13 C 0.01 0.62 5.30 84.66 0.45 1.06 16 14 N -0.92 -54.58 11.32 21.45 0.24 -54.34 16 15 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 C -0.10 -4.93 4.98 30.61 0.15 -4.78 16 20 C -0.09 -3.57 5.41 30.61 0.17 -3.40 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 23 H 0.05 1.34 7.75 -2.39 -0.02 1.32 16 24 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 28 H 0.04 0.95 7.43 -2.38 -0.02 0.93 16 29 H 0.34 7.97 8.09 -89.70 -0.73 7.24 16 30 H 0.03 1.17 7.11 -2.39 -0.02 1.15 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.04 1.69 7.43 -2.39 -0.02 1.67 16 Total: -1.00 -60.52 306.49 2.95 -57.57 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.25 Total: 15.05 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 3.02 Total: -44.06 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.34 Total: -75.08 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -60.52 2.95 -57.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.546 kcal (2) G-P(sol) polarization free energy of solvation -60.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds