Wall clock time and date at job start Mon Mar 30 2020 17:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 C 1.53000 * 109.46988 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47097 * 173.57129 * 4 3 2 6 6 C 1.46901 * 110.99926 * 185.35182 * 5 4 3 7 7 C 1.50699 * 109.46997 * 164.02077 * 6 5 4 8 8 H 1.08003 * 119.99931 * 4.81925 * 7 6 5 9 9 C 1.37872 * 120.00167 * 184.81671 * 7 6 5 10 10 N 1.31524 * 119.99928 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00453 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47395 * 89.99878 * 11 9 7 13 13 H 1.48501 * 109.47215 * 209.99860 * 11 9 7 14 14 H 1.48504 * 109.46837 * 329.99919 * 11 9 7 15 15 C 1.46901 * 111.00103 * 61.39545 * 5 4 3 16 16 C 1.54273 * 110.03125 * 23.17775 * 15 5 4 17 17 C 1.54965 * 104.15751 * 217.13871 * 16 15 5 18 18 C 1.54889 * 102.78030 * 37.88755 * 17 16 15 19 19 C 1.53871 * 110.03335 * 265.96225 * 15 5 4 20 20 H 1.09002 * 109.47228 * 60.00292 * 1 2 3 21 21 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47236 * 300.00430 * 1 2 3 23 23 H 1.08997 * 109.47236 * 239.99570 * 2 1 3 24 24 H 1.09001 * 109.46709 * 119.99628 * 2 1 3 25 25 H 1.08993 * 109.47043 * 59.99897 * 3 2 1 26 26 H 1.09002 * 109.46897 * 299.99910 * 3 2 1 27 27 H 1.08995 * 109.46958 * 53.57028 * 4 3 2 28 28 H 1.09006 * 109.47107 * 293.57327 * 4 3 2 29 29 H 1.09007 * 109.46893 * 284.01847 * 6 5 4 30 30 H 1.08997 * 109.47344 * 44.01900 * 6 5 4 31 31 H 0.96997 * 120.00170 * 180.02562 * 10 9 7 32 32 H 1.08997 * 110.01842 * 144.56714 * 15 5 4 33 33 H 1.08998 * 110.48213 * 335.78305 * 16 15 5 34 34 H 1.09001 * 110.48500 * 98.42635 * 16 15 5 35 35 H 1.09006 * 110.71635 * 279.56999 * 17 16 15 36 36 H 1.09002 * 110.92135 * 156.29644 * 17 16 15 37 37 H 1.09002 * 110.48163 * 203.40733 * 18 17 16 38 38 H 1.08993 * 110.59966 * 80.81591 * 18 17 16 39 39 H 1.09003 * 110.02886 * 238.56839 * 19 15 5 40 40 H 1.09000 * 110.03341 * 359.97438 * 19 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0597 2.8188 -0.1544 6 6 5.5226 2.8453 -0.2855 7 6 5.9542 4.1841 -0.8264 8 1 5.2249 4.9663 -0.9769 9 6 7.2802 4.4104 -1.1290 10 7 8.1684 3.4580 -0.9452 11 14 7.8153 6.0700 -1.7987 12 1 8.1773 6.9656 -0.6708 13 1 8.9930 5.8897 -2.6851 14 1 6.7011 6.6741 -2.5726 15 6 3.6157 3.6645 0.9617 16 6 3.2976 2.7908 2.1927 17 6 2.0651 3.4758 2.8354 18 6 1.2447 3.9311 1.6031 19 6 2.3112 4.3895 0.5871 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8899 26 1 1.6766 1.9563 -0.8900 27 1 3.9336 0.8322 -0.8259 28 1 3.9329 1.0317 0.9428 29 1 5.9779 2.6843 0.6917 30 1 5.8406 2.0578 -0.9687 31 1 9.1013 3.6173 -1.1577 32 1 4.3890 4.3915 1.2096 33 1 3.0520 1.7742 1.8857 34 1 4.1386 2.7882 2.8862 35 1 2.3697 4.3336 3.4351 36 1 1.4963 2.7675 3.4379 37 1 0.5881 4.7601 1.8671 38 1 0.6657 3.1004 1.1996 39 1 2.4513 5.4684 0.6540 40 1 2.0078 4.1143 -0.4230 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201713416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:10 Heat of formation + Delta-G solvation = -3.234784 kcal Electronic energy + Delta-G solvation = -16646.223912 eV Core-core repulsion = 14267.659007 eV Total energy + Delta-G solvation = -2378.564904 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.35980 -34.88388 -34.21052 -32.28198 -29.09163 -28.16446 -27.41741 -25.47063 -22.76369 -21.41921 -20.82451 -20.20201 -18.41963 -16.30417 -15.96319 -15.32813 -14.67475 -14.42403 -13.84485 -13.65333 -13.30150 -12.88760 -12.65282 -12.15213 -11.94522 -11.75493 -11.31101 -11.03315 -10.90614 -10.86745 -10.75432 -10.67943 -10.55436 -10.44083 -10.19580 -10.13628 -9.81115 -9.65262 -9.54505 -9.13608 -8.38491 -7.09571 -5.97702 -3.98418 3.34369 3.40448 3.45314 4.46083 4.85031 5.08573 5.11548 5.18248 5.20370 5.36395 5.36612 5.47754 5.70144 5.82121 5.93727 5.96014 5.97157 6.02253 6.04801 6.07600 6.15566 6.18065 6.24763 6.31754 6.35861 6.43897 6.50548 6.64086 6.68876 6.82366 6.86828 6.99607 7.35384 7.42289 7.89472 8.19374 8.35294 8.64172 9.09911 9.65467 11.12979 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031300 B = 0.007409 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.343325 B = 3778.347665 C = 4210.128437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.140 4.140 4 C 0.051 3.949 5 N -0.529 5.529 6 C 0.192 3.808 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.053 3.947 10 N -0.901 5.901 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.088 3.912 16 C -0.175 4.175 17 C -0.121 4.121 18 C -0.131 4.131 19 C -0.113 4.113 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.029 0.971 29 H -0.013 1.013 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.439 -3.398 5.002 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.177 4.177 4 C -0.077 4.077 5 N -0.252 5.252 6 C 0.066 3.934 7 C -0.540 4.540 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.021 4.021 16 C -0.213 4.213 17 C -0.159 4.159 18 C -0.169 4.169 19 C -0.151 4.151 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.005 0.995 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.417 -3.237 4.517 14.522 hybrid contribution 0.916 0.526 0.361 1.116 sum -12.501 -2.711 4.878 13.690 Atomic orbital electron populations 1.21752 0.96355 1.00938 1.01609 1.21523 0.95334 0.97900 1.01546 1.22269 0.95962 0.95760 1.03723 1.22156 0.94366 0.91984 0.99188 1.62365 1.15240 1.07171 1.40395 1.19757 0.80274 0.97971 0.95351 1.21180 0.92656 0.98243 1.41909 0.91950 1.24989 0.96698 0.96993 0.96039 1.69964 1.02182 1.32585 1.49350 0.86524 0.78129 0.84069 0.78852 1.20822 1.21324 1.19800 1.22214 0.96606 0.95192 0.88113 1.23495 0.97539 1.01835 0.98427 1.22425 0.96685 0.99661 0.97080 1.22564 0.97878 1.00226 0.96191 1.22249 0.94417 0.99151 0.99320 0.92840 0.93311 0.93033 0.92325 0.92620 0.89566 0.91529 0.91950 0.95299 0.99498 0.95217 0.93031 0.89994 0.88922 0.92604 0.92036 0.92543 0.92639 0.91221 0.92632 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.55 5.93 -26.73 -0.16 -1.71 16 3 C -0.14 -2.06 3.40 -26.73 -0.09 -2.15 16 4 C 0.05 0.94 4.41 -3.83 -0.02 0.92 16 5 N -0.53 -11.43 4.27 -226.74 -0.97 -12.40 16 6 C 0.19 5.06 4.62 -4.98 -0.02 5.04 16 7 C -0.50 -14.28 8.43 -34.44 -0.29 -14.57 16 8 H 0.06 1.77 7.77 -52.48 -0.41 1.36 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 11 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.09 1.70 2.69 -66.59 -0.18 1.52 16 16 C -0.17 -2.86 5.28 -25.03 -0.13 -2.99 16 17 C -0.12 -1.63 6.72 -24.70 -0.17 -1.80 16 18 C -0.13 -1.76 6.12 -25.07 -0.15 -1.91 16 19 C -0.11 -1.87 5.77 -25.62 -0.15 -2.02 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.22 2.24 -51.93 -0.12 1.10 16 26 H 0.07 1.04 7.69 -51.93 -0.40 0.64 16 27 H 0.06 1.18 7.97 -51.93 -0.41 0.76 16 28 H 0.03 0.53 6.03 -51.93 -0.31 0.22 16 29 H -0.01 -0.36 8.05 -51.93 -0.42 -0.78 16 30 H 0.03 0.84 7.88 -51.93 -0.41 0.44 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 32 H 0.08 1.82 7.12 -51.93 -0.37 1.45 16 33 H 0.09 1.48 3.45 -51.93 -0.18 1.30 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.89 6.03 -51.93 -0.31 0.57 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.29 7.15 -51.93 -0.37 0.92 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -29.28 298.28 -8.92 -38.20 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.07 Total: -1.40 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.09 Total: -19.43 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.23 Total: -38.81 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.28 -8.92 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201713416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.967 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds