Wall clock time and date at job start Mon Mar 30 2020 17:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46896 * 2 1 4 4 C 1.52998 * 109.46882 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.46960 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00313 * 287.33481 * 5 4 3 7 7 C 1.50697 * 109.47132 * 169.95128 * 6 5 4 8 8 H 1.07997 * 119.99815 * 354.44040 * 7 6 5 9 9 C 1.37881 * 119.99762 * 174.43269 * 7 6 5 10 10 N 1.31510 * 119.99730 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99928 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46923 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47042 * 120.00326 * 11 9 7 14 14 H 1.48489 * 109.47171 * 240.00290 * 11 9 7 15 15 C 1.46899 * 111.00098 * 163.37672 * 5 4 3 16 16 C 1.53002 * 109.47316 * 293.95934 * 15 5 4 17 17 H 1.08993 * 115.54749 * 29.41497 * 16 15 5 18 18 C 1.52997 * 117.49746 * 243.74544 * 16 15 5 19 19 C 1.53000 * 117.49666 * 175.08419 * 16 15 5 20 20 H 1.08997 * 117.49771 * 214.97124 * 19 16 15 21 21 C 1.52994 * 117.50301 * 359.97438 * 19 16 15 22 22 H 1.08992 * 109.47405 * 299.99554 * 1 2 3 23 23 H 1.09003 * 109.46979 * 60.00039 * 1 2 3 24 24 H 1.09003 * 109.46786 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47248 * 120.00214 * 2 1 3 26 26 H 1.09001 * 109.47380 * 240.00735 * 2 1 3 27 27 H 1.08996 * 109.47346 * 300.00154 * 3 2 1 28 28 H 1.09001 * 109.46506 * 60.00200 * 3 2 1 29 29 H 1.08993 * 109.47426 * 299.96627 * 4 3 2 30 30 H 1.09001 * 109.46949 * 59.97683 * 4 3 2 31 31 H 1.08994 * 109.46829 * 289.95704 * 6 5 4 32 32 H 1.09005 * 109.46681 * 49.95215 * 6 5 4 33 33 H 0.97001 * 119.99639 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.46675 * 53.95418 * 15 5 4 35 35 H 1.08993 * 109.46970 * 173.95206 * 15 5 4 36 36 H 1.09000 * 117.49670 * 0.02562 * 18 16 15 37 37 H 1.09000 * 117.49881 * 145.02012 * 18 16 15 38 38 H 1.09004 * 109.47087 * 59.99268 * 21 19 16 39 39 H 1.08994 * 109.47601 * 179.97438 * 21 19 16 40 40 H 1.08998 * 109.46670 * 300.00267 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0596 2.8276 0.0000 6 6 3.8504 3.4595 -1.3096 7 6 4.1317 4.9363 -1.2055 8 1 4.3477 5.3784 -0.2441 9 6 4.1134 5.7230 -2.3377 10 7 3.8500 5.1846 -3.5082 11 14 4.4628 7.5535 -2.2088 12 1 4.7286 7.9081 -0.7914 13 1 5.6507 7.8900 -3.0339 14 1 3.2874 8.3174 -2.6985 15 6 5.4738 2.8862 0.3929 16 6 5.6162 2.4504 1.8526 17 1 4.8719 1.7362 2.2047 18 6 6.1277 3.4887 2.8532 19 6 7.0323 2.3323 2.4197 20 1 7.2195 1.5408 3.1453 21 6 8.1977 2.6585 1.4837 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.9329 0.9294 0.8911 30 1 3.9336 0.9282 -0.8889 31 1 4.5237 3.0119 -2.0405 32 1 2.8182 3.3075 -1.6255 33 1 3.8368 5.7382 -4.3047 34 1 6.0556 2.2195 -0.2436 35 1 5.8400 3.9067 0.2810 36 1 6.3624 4.4824 2.4716 37 1 5.7202 3.4573 3.8637 38 1 8.1100 3.6892 1.1398 39 1 9.1392 2.5330 2.0182 40 1 8.1739 1.9862 0.6260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209419608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:19 Heat of formation + Delta-G solvation = -15.387745 kcal Electronic energy + Delta-G solvation = -15962.877637 eV Core-core repulsion = 13583.785741 eV Total energy + Delta-G solvation = -2379.091896 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.71799 -37.75943 -35.57550 -34.41437 -30.25562 -29.84958 -28.82518 -26.56721 -24.57823 -22.76602 -22.09677 -21.45195 -20.07582 -18.61221 -17.19881 -16.59468 -16.23932 -15.81261 -15.39190 -15.23145 -14.40549 -14.19680 -13.97258 -13.86331 -13.59500 -13.42165 -13.31265 -12.94985 -12.76518 -12.52973 -12.33101 -12.18978 -12.12847 -12.00524 -11.68169 -11.60927 -11.29291 -11.18165 -10.72651 -10.58335 -10.56818 -8.96487 -8.21137 -6.30818 1.38335 1.38994 1.52746 2.38835 2.86459 3.11096 3.33249 3.81373 3.98811 4.04672 4.08188 4.23420 4.34441 4.46086 4.49705 4.57878 4.66915 4.71134 4.81657 4.89770 4.94464 4.96556 5.00598 5.02181 5.03228 5.13437 5.18838 5.22038 5.31210 5.31526 5.42284 5.44460 5.50559 5.52868 5.66324 6.08304 6.38639 6.68844 6.86857 7.38781 8.90030 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.009933 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.423463 B = 2818.103277 C = 4512.703652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.108 4.108 4 C 0.055 3.945 5 N -0.542 5.542 6 C 0.209 3.791 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.966 3.034 12 H -0.264 1.264 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.103 3.897 16 C -0.153 4.153 17 H 0.110 0.890 18 C -0.172 4.172 19 C -0.142 4.142 20 H 0.124 0.876 21 C -0.124 4.124 22 H 0.057 0.943 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.009 0.991 31 H -0.043 1.043 32 H 0.007 0.993 33 H 0.264 0.736 34 H 0.012 0.988 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 -8.516 11.105 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.146 4.146 4 C -0.073 4.073 5 N -0.266 5.266 6 C 0.083 3.917 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.791 3.209 12 H -0.188 1.188 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.025 4.025 16 C -0.171 4.171 17 H 0.128 0.872 18 C -0.209 4.209 19 C -0.160 4.160 20 H 0.142 0.858 21 C -0.181 4.181 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.027 0.973 31 H -0.025 1.025 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.713 -8.205 11.266 14.042 hybrid contribution 0.459 0.635 -1.316 1.532 sum 2.172 -7.571 9.950 12.690 Atomic orbital electron populations 1.21743 0.95019 1.02196 1.01623 1.21460 0.96591 0.95102 1.02227 1.21529 0.94339 0.97496 1.01228 1.22188 0.96140 0.89239 0.99767 1.62028 1.18014 1.16265 1.30251 1.19371 0.94139 0.93731 0.84489 1.21476 1.46989 0.93718 0.93660 0.92206 1.25906 0.95152 1.03802 0.94803 1.70098 1.50639 1.37594 0.99165 0.85374 0.77890 0.79125 0.78511 1.18794 1.20317 1.20280 1.21372 0.88137 0.99420 0.93530 1.22343 0.97938 1.03267 0.93540 0.87230 1.23147 1.03912 0.94143 0.99675 1.22500 0.90618 1.01136 1.01753 0.85793 1.21353 0.97417 1.00760 0.98600 0.92391 0.93839 0.91150 0.90532 0.92602 0.94743 0.91782 0.89432 0.97285 1.02522 0.97455 0.92734 0.97022 0.92503 0.90217 0.87471 0.93854 0.90245 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.12 -3.01 5.93 30.60 0.18 -2.83 16 3 C -0.11 -3.71 5.28 30.60 0.16 -3.55 16 4 C 0.05 2.03 4.82 86.30 0.42 2.45 16 5 N -0.54 -24.41 4.45 -900.80 -4.01 -28.41 16 6 C 0.21 11.59 4.57 85.56 0.39 11.98 16 7 C -0.52 -30.41 8.25 25.60 0.21 -30.20 16 8 H 0.06 3.47 7.40 -2.91 -0.02 3.45 16 9 C 0.00 0.07 5.46 84.66 0.46 0.53 16 10 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 11 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 15 C 0.10 4.21 4.18 86.30 0.36 4.57 16 16 C -0.15 -4.77 5.58 -10.79 -0.06 -4.83 16 17 H 0.11 3.23 6.40 -2.39 -0.02 3.21 16 18 C -0.17 -4.79 9.83 30.62 0.30 -4.49 16 19 C -0.14 -3.56 6.41 -10.77 -0.07 -3.62 16 20 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 21 C -0.12 -3.12 9.20 71.98 0.66 -2.46 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 1.39 6.63 -2.39 -0.02 1.37 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.09 2.76 6.01 -2.39 -0.01 2.74 16 30 H 0.01 0.35 8.04 -2.39 -0.02 0.33 16 31 H -0.04 -2.63 8.12 -2.39 -0.02 -2.64 16 32 H 0.01 0.44 6.44 -2.38 -0.02 0.42 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 34 H 0.01 0.49 7.75 -2.39 -0.02 0.47 16 35 H 0.06 2.60 6.50 -2.39 -0.02 2.59 16 36 H 0.08 2.46 7.94 -2.39 -0.02 2.44 16 37 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.04 1.22 7.90 -2.39 -0.02 1.20 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.37 7.84 -2.39 -0.02 1.35 16 Total: -1.00 -64.69 316.57 3.00 -61.69 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.96 Total: 11.76 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 3.73 Total: -35.15 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -3.72 Total: -85.59 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -64.69 3.00 -61.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209419608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.298 kcal (2) G-P(sol) polarization free energy of solvation -64.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds