Wall clock time and date at job start Mon Mar 30 2020 17:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.53002 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47311 * 179.64781 * 4 3 2 6 6 C 1.46900 * 110.99843 * 59.41007 * 5 4 3 7 7 C 1.50698 * 109.47180 * 66.04491 * 6 5 4 8 8 H 1.08001 * 119.99822 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99972 * 180.27074 * 7 6 5 10 10 N 1.31511 * 119.99648 * 359.73204 * 9 7 6 11 11 Si 1.86798 * 119.99756 * 179.72683 * 9 7 6 12 12 H 1.48495 * 109.46977 * 90.00640 * 11 9 7 13 13 H 1.48503 * 109.46892 * 210.00314 * 11 9 7 14 14 H 1.48496 * 109.47005 * 330.00106 * 11 9 7 15 15 C 1.46900 * 110.99956 * 295.45724 * 5 4 3 16 16 C 1.53001 * 109.47407 * 287.97798 * 15 5 4 17 17 H 1.08999 * 115.54894 * 329.63714 * 16 15 5 18 18 C 1.53000 * 117.49796 * 115.33752 * 16 15 5 19 19 C 1.52992 * 117.50276 * 183.96282 * 16 15 5 20 20 H 1.09009 * 117.49979 * 145.02281 * 19 16 15 21 21 C 1.52996 * 117.49958 * 0.02617 * 19 16 15 22 22 H 1.08994 * 109.46982 * 299.99687 * 1 2 3 23 23 H 1.09008 * 109.46999 * 60.00054 * 1 2 3 24 24 H 1.09002 * 109.47243 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.46753 * 240.00182 * 2 1 3 26 26 H 1.08997 * 109.46929 * 120.00445 * 2 1 3 27 27 H 1.09000 * 109.46984 * 59.99816 * 3 2 1 28 28 H 1.09008 * 109.47015 * 299.99936 * 3 2 1 29 29 H 1.09008 * 109.46877 * 59.64986 * 4 3 2 30 30 H 1.08995 * 109.47324 * 299.65388 * 4 3 2 31 31 H 1.08996 * 109.47296 * 306.04322 * 6 5 4 32 32 H 1.09008 * 109.46950 * 186.04884 * 6 5 4 33 33 H 0.97001 * 119.99494 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47465 * 47.98290 * 15 5 4 35 35 H 1.09006 * 109.47030 * 167.97876 * 15 5 4 36 36 H 1.09000 * 117.49761 * 214.98392 * 18 16 15 37 37 H 1.08997 * 117.49881 * 0.02562 * 18 16 15 38 38 H 1.08999 * 109.47119 * 59.99863 * 21 19 16 39 39 H 1.08999 * 109.47477 * 180.02562 * 21 19 16 40 40 H 1.09007 * 109.47053 * 299.99793 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8273 -0.0079 6 6 3.5768 3.5637 1.1679 7 6 4.1863 2.9755 2.4143 8 1 4.8650 2.1386 2.3403 9 6 3.8736 3.5025 3.6495 10 7 3.0475 4.5218 3.7394 11 14 4.6233 2.7685 5.1950 12 1 5.9021 3.4586 5.5006 13 1 3.6833 2.9419 6.3315 14 1 4.8802 1.3216 4.9814 15 6 3.6800 3.5124 -1.2506 16 6 4.5132 2.9636 -2.4106 17 1 5.5117 2.6139 -2.1481 18 6 3.7721 2.2168 -3.5214 19 6 4.3314 3.6168 -3.7821 20 1 5.2102 3.6966 -4.4221 21 6 3.3308 4.7693 -3.8886 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8901 29 1 3.9338 0.9230 -0.8860 30 1 3.9331 0.9341 0.8939 31 1 2.4909 3.4874 1.2236 32 1 3.8634 4.6120 1.0830 33 1 2.8273 4.8924 4.6083 34 1 2.6222 3.3422 -1.4507 35 1 3.8625 4.5819 -1.1463 36 1 4.2829 1.3755 -3.9898 37 1 2.6909 2.1168 -3.4260 38 1 3.6347 5.5770 -3.2229 39 1 3.3050 5.1344 -4.9153 40 1 2.3393 4.4171 -3.6036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209419614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:20 Heat of formation + Delta-G solvation = 3.419824 kcal Electronic energy + Delta-G solvation = -16192.330585 eV Core-core repulsion = 13814.054246 eV Total energy + Delta-G solvation = -2378.276339 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.51604 -36.45992 -33.76967 -32.36488 -28.64464 -28.27979 -27.39272 -24.76609 -23.22714 -21.31443 -21.12804 -19.89250 -18.48245 -16.20485 -15.74051 -15.20894 -14.65351 -14.28811 -13.90266 -13.65428 -13.24754 -12.90512 -12.49629 -12.35884 -12.17822 -12.00033 -11.39111 -11.31115 -11.24762 -11.04523 -10.79607 -10.68712 -10.63394 -10.44306 -10.35704 -9.91340 -9.81919 -9.50904 -9.34484 -9.09196 -8.38341 -7.07093 -5.98553 -3.98883 3.34334 3.40203 3.43820 4.02274 4.45929 4.85642 4.97991 5.15364 5.30101 5.36674 5.37363 5.41832 5.49160 5.60301 5.77682 5.90308 5.92932 5.95112 6.05949 6.11921 6.14590 6.15301 6.19640 6.29302 6.33744 6.37518 6.45069 6.52174 6.59063 6.70497 6.87028 7.02714 7.39456 7.48278 7.86535 8.17044 8.29926 8.63596 9.08918 9.64872 11.12277 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.007884 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.533533 B = 3550.490701 C = 4366.176061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.157 4.157 4 C 0.070 3.930 5 N -0.535 5.535 6 C 0.189 3.811 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.082 3.918 16 C -0.128 4.128 17 H 0.108 0.892 18 C -0.182 4.182 19 C -0.160 4.160 20 H 0.098 0.902 21 C -0.121 4.121 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.076 0.924 31 H -0.001 1.001 32 H 0.026 0.974 33 H 0.260 0.740 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -4.744 -12.027 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.196 4.196 4 C -0.059 4.059 5 N -0.257 5.257 6 C 0.064 3.936 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.046 4.046 16 C -0.147 4.147 17 H 0.126 0.874 18 C -0.219 4.219 19 C -0.179 4.179 20 H 0.116 0.884 21 C -0.178 4.178 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.016 0.984 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.384 -4.620 -11.853 12.797 hybrid contribution -0.547 -0.284 0.851 1.051 sum -1.931 -4.903 -11.002 12.199 Atomic orbital electron populations 1.21771 0.96682 1.00698 1.01598 1.21420 0.95129 0.97648 1.01318 1.22237 0.99099 0.96146 1.02080 1.21981 0.91447 0.91418 1.01050 1.62276 1.59357 1.02038 1.02036 1.19779 0.93986 0.93529 0.86307 1.21159 1.26555 1.16121 0.90248 0.91994 1.24971 0.95376 0.95192 0.99088 1.69959 1.35257 1.24273 1.24471 0.86541 0.78919 0.79540 0.82670 1.20700 1.21405 1.19897 1.21609 0.95348 0.98061 0.89620 1.22464 1.00946 1.02330 0.88933 0.87424 1.23120 0.99918 0.94552 1.04330 1.22328 1.01145 0.93975 1.00437 0.88423 1.21310 0.98034 0.97301 1.01130 0.92715 0.93329 0.93448 0.92866 0.92091 0.90572 0.93170 0.92966 0.90569 0.98376 0.95632 0.93044 0.95241 0.91448 0.89537 0.89321 0.92069 0.92810 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.93 16 3 C -0.16 -2.84 4.57 -26.73 -0.12 -2.96 16 4 C 0.07 1.35 5.02 -3.83 -0.02 1.33 16 5 N -0.53 -11.54 4.66 -236.07 -1.10 -12.64 16 6 C 0.19 4.90 4.46 -4.98 -0.02 4.88 16 7 C -0.50 -14.10 8.52 -34.44 -0.29 -14.40 16 8 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 11 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.08 1.50 4.20 -3.82 -0.02 1.48 16 16 C -0.13 -1.97 5.05 -90.62 -0.46 -2.43 16 17 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 18 C -0.18 -2.39 9.82 -26.73 -0.26 -2.65 16 19 C -0.16 -2.06 6.41 -90.63 -0.58 -2.64 16 20 H 0.10 1.15 8.14 -51.92 -0.42 0.72 16 21 C -0.12 -1.45 9.20 37.16 0.34 -1.11 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.63 6.28 -51.93 -0.33 1.31 16 28 H 0.05 0.88 6.27 -51.92 -0.33 0.55 16 29 H 0.05 0.92 7.39 -51.92 -0.38 0.53 16 30 H 0.08 1.62 6.87 -51.93 -0.36 1.27 16 31 H 0.00 -0.04 5.99 -51.93 -0.31 -0.35 16 32 H 0.03 0.72 7.86 -51.92 -0.41 0.31 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.03 0.53 5.68 -51.93 -0.30 0.24 16 35 H 0.07 1.28 7.49 -51.93 -0.39 0.89 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 38 H 0.06 0.76 7.87 -51.93 -0.41 0.36 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.68 7.90 -51.93 -0.41 0.26 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -28.78 313.58 -9.32 -38.10 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.34 Total: -0.27 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -1.32 Total: -20.64 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.36 Total: -38.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.78 -9.32 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209419614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.520 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds