Wall clock time and date at job start Mon Mar 30 2020 17:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.53002 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47311 * 179.64781 * 4 3 2 6 6 C 1.46900 * 110.99843 * 59.41007 * 5 4 3 7 7 C 1.50698 * 109.47180 * 66.04491 * 6 5 4 8 8 H 1.08001 * 119.99822 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99972 * 180.27074 * 7 6 5 10 10 N 1.31511 * 119.99648 * 359.73204 * 9 7 6 11 11 Si 1.86798 * 119.99756 * 179.72683 * 9 7 6 12 12 H 1.48495 * 109.46977 * 90.00640 * 11 9 7 13 13 H 1.48503 * 109.46892 * 210.00314 * 11 9 7 14 14 H 1.48496 * 109.47005 * 330.00106 * 11 9 7 15 15 C 1.46900 * 110.99956 * 295.45724 * 5 4 3 16 16 C 1.53001 * 109.47407 * 287.97798 * 15 5 4 17 17 H 1.08999 * 115.54894 * 329.63714 * 16 15 5 18 18 C 1.53000 * 117.49796 * 115.33752 * 16 15 5 19 19 C 1.52992 * 117.50276 * 183.96282 * 16 15 5 20 20 H 1.09009 * 117.49979 * 145.02281 * 19 16 15 21 21 C 1.52996 * 117.49958 * 0.02617 * 19 16 15 22 22 H 1.08994 * 109.46982 * 299.99687 * 1 2 3 23 23 H 1.09008 * 109.46999 * 60.00054 * 1 2 3 24 24 H 1.09002 * 109.47243 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.46753 * 240.00182 * 2 1 3 26 26 H 1.08997 * 109.46929 * 120.00445 * 2 1 3 27 27 H 1.09000 * 109.46984 * 59.99816 * 3 2 1 28 28 H 1.09008 * 109.47015 * 299.99936 * 3 2 1 29 29 H 1.09008 * 109.46877 * 59.64986 * 4 3 2 30 30 H 1.08995 * 109.47324 * 299.65388 * 4 3 2 31 31 H 1.08996 * 109.47296 * 306.04322 * 6 5 4 32 32 H 1.09008 * 109.46950 * 186.04884 * 6 5 4 33 33 H 0.97001 * 119.99494 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47465 * 47.98290 * 15 5 4 35 35 H 1.09006 * 109.47030 * 167.97876 * 15 5 4 36 36 H 1.09000 * 117.49761 * 214.98392 * 18 16 15 37 37 H 1.08997 * 117.49881 * 0.02562 * 18 16 15 38 38 H 1.08999 * 109.47119 * 59.99863 * 21 19 16 39 39 H 1.08999 * 109.47477 * 180.02562 * 21 19 16 40 40 H 1.09007 * 109.47053 * 299.99793 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8273 -0.0079 6 6 3.5768 3.5637 1.1679 7 6 4.1863 2.9755 2.4143 8 1 4.8650 2.1386 2.3403 9 6 3.8736 3.5025 3.6495 10 7 3.0475 4.5218 3.7394 11 14 4.6233 2.7685 5.1950 12 1 5.9021 3.4586 5.5006 13 1 3.6833 2.9419 6.3315 14 1 4.8802 1.3216 4.9814 15 6 3.6800 3.5124 -1.2506 16 6 4.5132 2.9636 -2.4106 17 1 5.5117 2.6139 -2.1481 18 6 3.7721 2.2168 -3.5214 19 6 4.3314 3.6168 -3.7821 20 1 5.2102 3.6966 -4.4221 21 6 3.3308 4.7693 -3.8886 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8901 29 1 3.9338 0.9230 -0.8860 30 1 3.9331 0.9341 0.8939 31 1 2.4909 3.4874 1.2236 32 1 3.8634 4.6120 1.0830 33 1 2.8273 4.8924 4.6083 34 1 2.6222 3.3422 -1.4507 35 1 3.8625 4.5819 -1.1463 36 1 4.2829 1.3755 -3.9898 37 1 2.6909 2.1168 -3.4260 38 1 3.6347 5.5770 -3.2229 39 1 3.3050 5.1344 -4.9153 40 1 2.3393 4.4171 -3.6036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209419614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:20 Heat of formation + Delta-G solvation = -12.591642 kcal Electronic energy + Delta-G solvation = -16193.024895 eV Core-core repulsion = 13814.054246 eV Total energy + Delta-G solvation = -2378.970648 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92052 -37.85766 -35.31932 -34.36687 -29.98603 -29.80915 -28.93253 -26.39190 -25.05734 -22.54201 -22.45907 -21.39182 -19.83090 -18.34887 -17.11913 -16.83779 -16.31622 -15.88624 -15.38459 -15.10826 -14.45948 -14.21180 -14.00563 -13.94400 -13.59842 -13.24146 -12.98153 -12.85634 -12.75746 -12.53739 -12.32389 -12.29344 -12.07222 -12.02051 -11.89042 -11.57723 -11.30367 -11.26188 -10.67901 -10.57665 -10.52863 -8.84676 -8.18398 -6.27535 1.39938 1.41438 1.52294 2.40601 2.90481 3.13865 3.36981 3.89487 3.99698 4.02992 4.08370 4.12239 4.34926 4.44312 4.48207 4.57043 4.68847 4.77407 4.84812 4.89618 4.90240 4.94892 4.99327 4.99961 5.08489 5.13450 5.19983 5.23383 5.27120 5.39391 5.41239 5.48437 5.49682 5.54736 5.69935 6.10176 6.42609 6.72941 6.89138 7.41628 8.92407 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.007884 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.533533 B = 3550.490701 C = 4366.176061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.074 3.926 5 N -0.545 5.545 6 C 0.206 3.794 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.965 3.035 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.264 1.264 15 C 0.089 3.911 16 C -0.151 4.151 17 H 0.099 0.901 18 C -0.166 4.166 19 C -0.146 4.146 20 H 0.116 0.884 21 C -0.123 4.123 22 H 0.038 0.962 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.053 0.947 31 H -0.024 1.024 32 H -0.007 1.007 33 H 0.263 0.737 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -6.379 -13.435 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.185 4.185 4 C -0.054 4.054 5 N -0.267 5.267 6 C 0.080 3.920 7 C -0.556 4.556 8 H 0.078 0.922 9 C -0.196 4.196 10 N -0.576 5.576 11 Si 0.790 3.210 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.189 1.189 15 C -0.039 4.039 16 C -0.170 4.170 17 H 0.117 0.883 18 C -0.202 4.202 19 C -0.164 4.164 20 H 0.134 0.866 21 C -0.180 4.180 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.072 0.928 31 H -0.006 1.006 32 H 0.011 0.989 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.110 -6.266 -13.284 14.729 hybrid contribution -0.638 0.259 1.224 1.404 sum -1.749 -6.006 -12.060 13.586 Atomic orbital electron populations 1.21749 0.95360 1.02134 1.01270 1.21397 0.96302 0.95250 1.02128 1.22089 0.98002 0.98108 1.00286 1.21961 0.92369 0.89949 1.01125 1.62188 1.59685 1.02958 1.01880 1.19391 0.92413 0.92160 0.88017 1.21446 1.26601 1.16138 0.91415 0.92223 1.25873 0.95702 0.95493 1.02548 1.70088 1.36484 1.25561 1.25425 0.85442 0.78141 0.79089 0.78327 1.19953 1.20776 1.18868 1.21555 0.96067 0.97015 0.89261 1.22228 1.00416 1.05366 0.88995 0.88274 1.23188 0.99893 0.95277 1.01886 1.22463 1.01766 0.94201 0.98015 0.86583 1.21347 0.97497 0.96801 1.02354 0.94310 0.92461 0.91106 0.90489 0.92771 0.94779 0.92459 0.90259 0.92822 1.00637 0.98914 0.92828 0.95126 0.93247 0.87574 0.89216 0.93126 0.90473 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.91 71.98 0.71 -3.05 16 2 C -0.11 -3.25 5.93 30.59 0.18 -3.07 16 3 C -0.15 -5.31 4.57 30.59 0.14 -5.17 16 4 C 0.07 2.89 5.02 86.30 0.43 3.32 16 5 N -0.54 -24.21 4.66 -900.79 -4.20 -28.40 16 6 C 0.21 11.28 4.46 85.56 0.38 11.66 16 7 C -0.52 -30.01 8.52 25.60 0.22 -29.80 16 8 H 0.06 3.41 7.10 -2.91 -0.02 3.39 16 9 C 0.00 0.09 5.46 84.66 0.46 0.55 16 10 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 11 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 14 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 15 C 0.09 3.31 4.20 86.30 0.36 3.67 16 16 C -0.15 -4.47 5.05 -10.80 -0.05 -4.53 16 17 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 18 C -0.17 -3.85 9.82 30.59 0.30 -3.55 16 19 C -0.15 -3.40 6.41 -10.80 -0.07 -3.47 16 20 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 21 C -0.12 -2.75 9.20 71.98 0.66 -2.08 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.03 1.52 6.28 -2.39 -0.01 1.51 16 28 H 0.06 1.98 6.27 -2.38 -0.01 1.96 16 29 H 0.08 2.66 7.39 -2.38 -0.02 2.64 16 30 H 0.05 2.32 6.87 -2.39 -0.02 2.30 16 31 H -0.02 -1.40 5.99 -2.39 -0.01 -1.41 16 32 H -0.01 -0.44 7.86 -2.38 -0.02 -0.45 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.03 1.12 5.68 -2.39 -0.01 1.11 16 35 H 0.05 1.97 7.49 -2.38 -0.02 1.95 16 36 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.09 2.10 7.94 -2.39 -0.02 2.08 16 38 H 0.05 1.24 7.87 -2.39 -0.02 1.22 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 1.15 7.90 -2.38 -0.02 1.14 16 Total: -1.00 -63.62 313.58 2.82 -60.80 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.97 Total: 12.90 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 3.73 Total: -35.51 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -3.91 Total: -85.41 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -63.62 2.82 -60.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209419614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.212 kcal (2) G-P(sol) polarization free energy of solvation -63.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds