Wall clock time and date at job start Mon Mar 30 2020 17:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47077 * 2 1 4 4 H 1.09004 * 109.47150 * 302.01390 * 3 2 1 5 5 C 1.50697 * 109.47340 * 182.01126 * 3 2 1 6 6 H 1.08005 * 119.99694 * 238.82010 * 5 3 2 7 7 C 1.37875 * 120.00139 * 58.81209 * 5 3 2 8 8 N 1.31510 * 119.99752 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99982 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46832 * 120.00592 * 9 7 5 12 12 H 1.48501 * 109.47219 * 240.00467 * 9 7 5 13 13 N 1.46906 * 109.46962 * 62.00663 * 3 2 1 14 14 C 1.46843 * 110.99898 * 45.71353 * 13 3 2 15 15 H 1.08996 * 109.46173 * 305.85362 * 14 13 3 16 16 C 1.53001 * 109.46272 * 65.81905 * 14 13 3 17 17 C 1.53043 * 109.52291 * 185.83773 * 14 13 3 18 18 C 1.53119 * 109.27609 * 300.81763 * 17 14 13 19 19 C 1.53127 * 109.21252 * 57.62249 * 18 17 14 20 20 C 1.46854 * 110.99721 * 169.91939 * 13 3 2 21 21 H 1.09001 * 109.46100 * 294.18223 * 20 13 3 22 22 C 1.52999 * 109.45850 * 54.15627 * 20 13 3 23 23 H 1.09000 * 109.47180 * 185.21441 * 1 2 3 24 24 H 1.09005 * 109.47256 * 305.21430 * 1 2 3 25 25 H 1.08999 * 109.47277 * 65.21673 * 1 2 3 26 26 H 1.09001 * 109.47148 * 239.99730 * 2 1 3 27 27 H 1.09001 * 109.46996 * 120.00056 * 2 1 3 28 28 H 0.97001 * 119.99717 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47105 * 180.02562 * 16 14 13 30 30 H 1.08995 * 109.47578 * 300.05491 * 16 14 13 31 31 H 1.09000 * 109.46906 * 60.05607 * 16 14 13 32 32 H 1.09001 * 109.49944 * 180.88055 * 17 14 13 33 33 H 1.08993 * 109.50497 * 60.75991 * 17 14 13 34 34 H 1.08998 * 109.52440 * 177.56044 * 18 17 14 35 35 H 1.09001 * 109.52692 * 297.68936 * 18 17 14 36 36 H 1.08997 * 109.50081 * 62.31606 * 19 18 17 37 37 H 1.09002 * 109.50408 * 182.43485 * 19 18 17 38 38 H 1.09001 * 109.47388 * 64.44923 * 22 20 13 39 39 H 1.09001 * 109.46550 * 184.43998 * 22 20 13 40 40 H 1.08995 * 109.47782 * 304.44208 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6474 1.9667 -0.8714 5 6 3.5461 1.4429 -0.0499 6 1 4.1124 1.9179 0.7377 7 6 4.2013 0.8367 -1.1007 8 7 3.5117 0.2586 -2.0598 9 14 6.0683 0.8365 -1.1621 10 1 6.6027 1.5466 0.0275 11 1 6.5632 -0.5635 -1.1662 12 1 6.5230 1.5259 -2.3963 13 7 1.5903 2.1208 1.2230 14 6 1.8042 1.2740 2.4034 15 1 1.3286 0.3059 2.2468 16 6 3.3052 1.0748 2.6227 17 6 1.1941 1.9487 3.6342 18 6 1.8511 3.3166 3.8385 19 6 1.6570 4.1623 2.5768 20 6 2.2523 3.4227 1.3764 21 1 3.3196 3.2706 1.5374 22 6 2.0412 4.2543 0.1096 23 1 -0.3633 -1.0234 0.0934 24 1 -0.3634 0.5926 0.8396 25 1 -0.3634 0.4308 -0.9330 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9726 -0.1681 -2.7990 29 1 3.4641 0.4458 3.4986 30 1 3.7399 0.5943 1.7462 31 1 3.7811 2.0428 2.7798 32 1 1.3668 1.3272 4.5129 33 1 0.1224 2.0784 3.4844 34 1 1.3894 3.8192 4.6884 35 1 2.9163 3.1846 4.0281 36 1 0.5927 4.3278 2.4098 37 1 2.1601 5.1213 2.7005 38 1 0.9800 4.4730 -0.0088 39 1 2.5976 5.1880 0.1912 40 1 2.3956 3.6945 -0.7558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:34 Heat of formation + Delta-G solvation = -0.937138 kcal Electronic energy + Delta-G solvation = -17630.709954 eV Core-core repulsion = 15252.244684 eV Total energy + Delta-G solvation = -2378.465271 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36878 -34.70963 -32.51352 -31.89331 -30.50627 -27.22810 -26.65094 -25.78271 -23.01085 -22.19167 -20.51743 -19.41595 -17.55511 -16.38199 -15.59419 -14.63995 -14.30211 -13.79532 -13.46223 -13.08142 -12.92942 -12.58559 -11.92991 -11.83847 -11.64896 -11.34396 -11.21496 -11.08808 -10.94332 -10.87689 -10.71298 -10.55201 -10.25726 -10.09627 -9.99341 -9.70122 -9.45769 -9.31236 -9.01573 -8.70938 -8.25592 -6.97106 -5.94358 -4.04214 3.25836 3.35355 3.38033 4.40948 5.06884 5.26159 5.43058 5.48705 5.51384 5.87442 6.10874 6.13388 6.18213 6.27431 6.35232 6.37787 6.44241 6.45659 6.49358 6.50475 6.54451 6.58265 6.68579 6.79820 6.88309 6.92397 7.11419 7.15587 7.17253 7.25838 7.40513 7.51951 7.74445 7.81956 8.11230 8.26107 8.47476 8.58082 9.03766 9.58670 11.02958 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.011837 C = 0.010546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.326870 B = 2364.814974 C = 2654.417876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.213 3.787 4 H 0.042 0.958 5 C -0.537 4.537 6 H 0.070 0.930 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.880 3.120 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.525 5.525 14 C 0.085 3.915 15 H 0.079 0.921 16 C -0.200 4.200 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.112 4.112 20 C 0.088 3.912 21 H 0.050 0.950 22 C -0.141 4.141 23 H 0.024 0.976 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.093 0.907 27 H 0.036 0.964 28 H 0.259 0.741 29 H 0.025 0.975 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 3.478 7.344 8.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.107 3.893 4 H 0.060 0.940 5 C -0.575 4.575 6 H 0.088 0.912 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.708 3.292 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.249 5.249 14 C -0.024 4.024 15 H 0.097 0.903 16 C -0.257 4.257 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.021 4.021 21 H 0.068 0.932 22 C -0.198 4.198 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.126 0.874 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.601 3.474 7.115 8.698 hybrid contribution 2.011 -0.205 0.010 2.021 sum -1.590 3.269 7.125 7.999 Atomic orbital electron populations 1.21769 0.99008 0.98438 1.00719 1.21777 0.92114 0.99668 1.02354 1.19283 0.92510 0.90389 0.87164 0.94044 1.22057 0.92949 1.35287 1.07253 0.91176 1.24919 0.97558 0.95543 0.95617 1.69877 1.34692 1.36843 1.10939 0.86728 0.86828 0.77668 0.77950 1.19910 1.21165 1.21126 1.62559 1.56745 1.02496 1.03092 1.21515 0.94188 0.96707 0.89950 0.90258 1.23077 0.98766 1.01040 1.02865 1.21628 0.99911 0.95830 0.97543 1.21560 1.00434 0.96346 0.97199 1.21668 1.00991 0.97341 0.94952 1.21360 0.97030 0.90249 0.93445 0.93214 1.21812 1.00214 0.98397 0.99376 0.95699 0.93134 0.94241 0.88839 0.94493 0.93094 0.95578 0.87373 0.93569 0.93078 0.92228 0.93385 0.92451 0.92159 0.93082 0.93687 0.94339 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.53 37.16 0.35 -2.50 16 2 C -0.12 -2.78 4.64 -26.73 -0.12 -2.91 16 3 C 0.21 5.00 1.35 -68.86 -0.09 4.90 16 4 H 0.04 1.10 6.75 -51.93 -0.35 0.75 16 5 C -0.54 -13.46 4.67 -34.44 -0.16 -13.62 16 6 H 0.07 1.77 4.14 -52.48 -0.22 1.55 16 7 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.88 -24.18 11.22 55.43 0.62 -23.56 16 9 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.52 -10.73 3.91 -212.24 -0.83 -11.56 16 14 C 0.09 1.62 2.12 -67.72 -0.14 1.48 16 15 H 0.08 1.57 5.21 -51.93 -0.27 1.30 16 16 C -0.20 -3.93 7.03 37.16 0.26 -3.66 16 17 C -0.11 -1.80 5.61 -26.65 -0.15 -1.95 16 18 C -0.12 -1.81 5.69 -26.60 -0.15 -1.96 16 19 C -0.11 -1.82 5.38 -26.65 -0.14 -1.96 16 20 C 0.09 1.70 1.67 -67.72 -0.11 1.58 16 21 H 0.05 1.07 4.58 -51.93 -0.24 0.83 16 22 C -0.14 -2.67 8.86 37.16 0.33 -2.34 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.98 6.95 -51.93 -0.36 0.62 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 2.43 5.92 -51.93 -0.31 2.12 16 27 H 0.04 0.84 5.71 -51.93 -0.30 0.54 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.11 2.46 4.63 -51.93 -0.24 2.22 16 31 H 0.05 0.91 4.64 -51.93 -0.24 0.66 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.91 6.56 -51.93 -0.34 0.56 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.68 5.85 -51.93 -0.30 1.38 16 LS Contribution 278.49 15.07 4.20 4.20 Total: -1.00 -25.45 278.49 -7.79 -33.24 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.53 Total: 3.33 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -0.23 Total: -21.30 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.21 Total: -35.12 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -25.45 -7.79 -33.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.301 kcal (2) G-P(sol) polarization free energy of solvation -25.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds