Wall clock time and date at job start Mon Mar 30 2020 17:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47077 * 2 1 4 4 H 1.09004 * 109.47150 * 302.01390 * 3 2 1 5 5 C 1.50697 * 109.47340 * 182.01126 * 3 2 1 6 6 H 1.08005 * 119.99694 * 238.82010 * 5 3 2 7 7 C 1.37875 * 120.00139 * 58.81209 * 5 3 2 8 8 N 1.31510 * 119.99752 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99982 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46832 * 120.00592 * 9 7 5 12 12 H 1.48501 * 109.47219 * 240.00467 * 9 7 5 13 13 N 1.46906 * 109.46962 * 62.00663 * 3 2 1 14 14 C 1.46843 * 110.99898 * 45.71353 * 13 3 2 15 15 H 1.08996 * 109.46173 * 305.85362 * 14 13 3 16 16 C 1.53001 * 109.46272 * 65.81905 * 14 13 3 17 17 C 1.53043 * 109.52291 * 185.83773 * 14 13 3 18 18 C 1.53119 * 109.27609 * 300.81763 * 17 14 13 19 19 C 1.53127 * 109.21252 * 57.62249 * 18 17 14 20 20 C 1.46854 * 110.99721 * 169.91939 * 13 3 2 21 21 H 1.09001 * 109.46100 * 294.18223 * 20 13 3 22 22 C 1.52999 * 109.45850 * 54.15627 * 20 13 3 23 23 H 1.09000 * 109.47180 * 185.21441 * 1 2 3 24 24 H 1.09005 * 109.47256 * 305.21430 * 1 2 3 25 25 H 1.08999 * 109.47277 * 65.21673 * 1 2 3 26 26 H 1.09001 * 109.47148 * 239.99730 * 2 1 3 27 27 H 1.09001 * 109.46996 * 120.00056 * 2 1 3 28 28 H 0.97001 * 119.99717 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47105 * 180.02562 * 16 14 13 30 30 H 1.08995 * 109.47578 * 300.05491 * 16 14 13 31 31 H 1.09000 * 109.46906 * 60.05607 * 16 14 13 32 32 H 1.09001 * 109.49944 * 180.88055 * 17 14 13 33 33 H 1.08993 * 109.50497 * 60.75991 * 17 14 13 34 34 H 1.08998 * 109.52440 * 177.56044 * 18 17 14 35 35 H 1.09001 * 109.52692 * 297.68936 * 18 17 14 36 36 H 1.08997 * 109.50081 * 62.31606 * 19 18 17 37 37 H 1.09002 * 109.50408 * 182.43485 * 19 18 17 38 38 H 1.09001 * 109.47388 * 64.44923 * 22 20 13 39 39 H 1.09001 * 109.46550 * 184.43998 * 22 20 13 40 40 H 1.08995 * 109.47782 * 304.44208 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6474 1.9667 -0.8714 5 6 3.5461 1.4429 -0.0499 6 1 4.1124 1.9179 0.7377 7 6 4.2013 0.8367 -1.1007 8 7 3.5117 0.2586 -2.0598 9 14 6.0683 0.8365 -1.1621 10 1 6.6027 1.5466 0.0275 11 1 6.5632 -0.5635 -1.1662 12 1 6.5230 1.5259 -2.3963 13 7 1.5903 2.1208 1.2230 14 6 1.8042 1.2740 2.4034 15 1 1.3286 0.3059 2.2468 16 6 3.3052 1.0748 2.6227 17 6 1.1941 1.9487 3.6342 18 6 1.8511 3.3166 3.8385 19 6 1.6570 4.1623 2.5768 20 6 2.2523 3.4227 1.3764 21 1 3.3196 3.2706 1.5374 22 6 2.0412 4.2543 0.1096 23 1 -0.3633 -1.0234 0.0934 24 1 -0.3634 0.5926 0.8396 25 1 -0.3634 0.4308 -0.9330 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9726 -0.1681 -2.7990 29 1 3.4641 0.4458 3.4986 30 1 3.7399 0.5943 1.7462 31 1 3.7811 2.0428 2.7798 32 1 1.3668 1.3272 4.5129 33 1 0.1224 2.0784 3.4844 34 1 1.3894 3.8192 4.6884 35 1 2.9163 3.1846 4.0281 36 1 0.5927 4.3278 2.4098 37 1 2.1601 5.1213 2.7005 38 1 0.9800 4.4730 -0.0088 39 1 2.5976 5.1880 0.1912 40 1 2.3956 3.6945 -0.7558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:34 Heat of formation + Delta-G solvation = -14.543622 kcal Electronic energy + Delta-G solvation = -17631.299976 eV Core-core repulsion = 15252.244684 eV Total energy + Delta-G solvation = -2379.055292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94639 -36.37733 -34.04913 -33.75582 -32.10612 -28.83802 -28.49991 -27.22633 -24.83243 -23.68457 -22.05237 -21.08673 -19.20401 -18.22189 -17.27648 -16.28675 -16.08473 -15.19498 -15.08621 -14.74797 -14.50005 -14.19912 -13.47613 -13.41519 -13.23338 -13.05485 -12.98508 -12.80228 -12.61366 -12.47478 -12.29174 -12.21747 -11.95479 -11.65118 -11.61417 -11.29034 -11.13632 -10.92733 -10.70300 -10.45751 -10.21175 -8.72273 -7.91807 -6.08782 1.35450 1.40488 1.47749 2.44026 3.23450 3.51199 4.08827 4.16120 4.19420 4.43751 4.62134 4.65868 4.71546 4.77414 4.80322 4.85266 4.90037 4.93765 4.96850 5.03702 5.18202 5.20932 5.25235 5.29927 5.38789 5.40379 5.43224 5.51605 5.52616 5.66670 5.67391 5.74959 5.88376 5.92910 6.21420 6.38716 6.57670 6.91223 7.10041 7.56281 9.00761 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.011837 C = 0.010546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.326870 B = 2364.814974 C = 2654.417876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.526 4.526 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.932 3.068 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.523 5.523 14 C 0.082 3.918 15 H 0.070 0.930 16 C -0.191 4.191 17 C -0.105 4.105 18 C -0.115 4.115 19 C -0.105 4.105 20 C 0.085 3.915 21 H 0.027 0.973 22 C -0.135 4.135 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.256 0.744 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 4.350 9.582 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.154 4.154 3 C 0.114 3.886 4 H 0.024 0.976 5 C -0.565 4.565 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.247 5.247 14 C -0.027 4.027 15 H 0.088 0.912 16 C -0.249 4.249 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.143 4.143 20 C -0.024 4.024 21 H 0.045 0.955 22 C -0.192 4.192 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.087 4.354 9.371 11.111 hybrid contribution 2.152 -0.455 -0.662 2.297 sum -1.934 3.898 8.709 9.735 Atomic orbital electron populations 1.21628 0.96611 0.99811 1.00647 1.21616 0.94204 0.98902 1.00655 1.18999 0.91468 0.90498 0.87596 0.97601 1.22258 0.93981 1.33776 1.06475 0.91442 1.25523 1.00790 0.95973 0.95783 1.70007 1.35755 1.38153 1.11540 0.85901 0.83069 0.77352 0.77685 1.19525 1.21261 1.21343 1.62520 1.56533 1.03041 1.02582 1.21604 0.93865 0.96545 0.90679 0.91197 1.22891 0.99083 1.00892 1.02021 1.21586 0.99941 0.96411 0.96370 1.21558 1.00352 0.95785 0.97569 1.21615 1.01112 0.97843 0.93721 1.21445 0.95926 0.89984 0.95055 0.95487 1.21737 1.00844 0.98759 0.97886 0.93748 0.92234 0.94991 0.92021 0.94572 0.93441 0.93622 0.90866 0.93669 0.91116 0.91690 0.90487 0.92927 0.91689 0.91260 0.92890 0.92260 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 9.53 71.98 0.69 -4.46 16 2 C -0.12 -5.40 4.64 30.59 0.14 -5.26 16 3 C 0.22 10.64 1.35 44.17 0.06 10.70 16 4 H 0.01 0.34 6.75 -2.39 -0.02 0.32 16 5 C -0.53 -26.98 4.67 25.60 0.12 -26.86 16 6 H 0.07 3.46 4.14 -2.91 -0.01 3.44 16 7 C 0.02 0.97 5.30 84.65 0.45 1.41 16 8 N -0.91 -51.73 11.22 21.45 0.24 -51.49 16 9 Si 0.93 43.34 29.54 68.60 2.03 45.37 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 13 N -0.52 -21.04 3.91 -825.41 -3.22 -24.26 16 14 C 0.08 2.97 2.12 44.94 0.10 3.07 16 15 H 0.07 2.67 5.21 -2.39 -0.01 2.66 16 16 C -0.19 -7.28 7.03 71.98 0.51 -6.77 16 17 C -0.11 -3.03 5.61 30.65 0.17 -2.85 16 18 C -0.12 -3.08 5.69 30.68 0.17 -2.90 16 19 C -0.11 -3.08 5.38 30.65 0.16 -2.92 16 20 C 0.08 3.17 1.67 44.94 0.08 3.24 16 21 H 0.03 1.15 4.58 -2.39 -0.01 1.14 16 22 C -0.13 -5.06 8.86 71.98 0.64 -4.43 16 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 2.24 6.95 -2.38 -0.02 2.22 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 3.31 5.92 -2.39 -0.01 3.29 16 27 H 0.04 1.66 5.71 -2.39 -0.01 1.65 16 28 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 3.33 4.63 -2.39 -0.01 3.32 16 31 H 0.04 1.71 4.64 -2.39 -0.01 1.70 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.47 6.56 -2.39 -0.02 1.46 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.76 5.85 -2.39 -0.01 1.74 16 Total: -1.00 -55.43 278.49 3.33 -52.10 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.01 Total: 16.31 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 3.28 Total: -38.02 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.98 Total: -75.75 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -55.43 3.33 -52.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.555 kcal (2) G-P(sol) polarization free energy of solvation -55.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds