Wall clock time and date at job start Mon Mar 30 2020 17:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47537 * 2 1 4 4 H 1.09000 * 109.46796 * 56.96130 * 3 2 1 5 5 C 1.50697 * 109.47405 * 176.95656 * 3 2 1 6 6 H 1.07998 * 120.00072 * 120.00208 * 5 3 2 7 7 C 1.37882 * 120.00202 * 300.00466 * 5 3 2 8 8 N 1.31520 * 119.99791 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00167 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47095 * 120.00142 * 9 7 5 12 12 H 1.48509 * 109.46774 * 239.99669 * 9 7 5 13 13 N 1.46892 * 109.47273 * 296.96007 * 3 2 1 14 14 C 1.46908 * 111.00072 * 295.62576 * 13 3 2 15 15 C 1.46904 * 111.00325 * 171.67391 * 13 3 2 16 16 C 1.53000 * 109.47241 * 199.13352 * 15 13 3 17 17 H 1.09003 * 115.54984 * 29.33281 * 16 15 13 18 18 C 1.52992 * 117.49944 * 243.61728 * 16 15 13 19 19 C 1.52995 * 117.50003 * 174.99368 * 16 15 13 20 20 C 1.52994 * 117.50272 * 214.98287 * 19 16 15 21 21 C 1.53001 * 117.49634 * 359.97438 * 19 16 15 22 22 H 1.08999 * 109.47391 * 175.38562 * 1 2 3 23 23 H 1.09007 * 109.47056 * 295.38146 * 1 2 3 24 24 H 1.08996 * 109.47424 * 55.37848 * 1 2 3 25 25 H 1.09006 * 109.46919 * 239.99817 * 2 1 3 26 26 H 1.09006 * 109.47517 * 120.00368 * 2 1 3 27 27 H 0.96997 * 119.99842 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.46929 * 296.04542 * 14 13 3 29 29 H 1.08996 * 109.47163 * 56.04108 * 14 13 3 30 30 H 1.08997 * 109.47492 * 176.04674 * 14 13 3 31 31 H 1.08999 * 109.46457 * 319.13141 * 15 13 3 32 32 H 1.08999 * 109.47269 * 79.13536 * 15 13 3 33 33 H 1.08991 * 117.50268 * 0.02562 * 18 16 15 34 34 H 1.09007 * 117.49957 * 145.02080 * 18 16 15 35 35 H 1.08995 * 109.47324 * 60.00039 * 20 19 16 36 36 H 1.09003 * 109.47668 * 180.02562 * 20 19 16 37 37 H 1.08998 * 109.47071 * 300.00213 * 20 19 16 38 38 H 1.09000 * 109.46998 * 60.00060 * 21 19 16 39 39 H 1.09004 * 109.47272 * 179.97438 * 21 19 16 40 40 H 1.08997 * 109.47439 * 299.99695 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6329 1.9717 0.8615 5 6 3.5451 1.4431 0.0754 6 1 4.1252 1.8966 -0.7146 7 6 4.1816 0.8646 1.1531 8 7 3.4752 0.3128 2.1155 9 14 6.0473 0.8661 1.2469 10 1 6.6026 1.5447 0.0486 11 1 6.4808 1.5874 2.4704 12 1 6.5414 -0.5335 1.2963 13 7 1.6113 2.1134 -1.2344 14 6 2.2258 1.4891 -2.4137 15 6 1.9107 3.5507 -1.1836 16 6 1.0576 4.2863 -2.2190 17 1 0.0943 3.8289 -2.4449 18 6 1.7881 4.9962 -3.3605 19 6 1.1371 5.8140 -2.2433 20 6 -0.1412 6.5827 -2.5833 21 6 2.0633 6.4892 -1.2298 22 1 -0.3634 -1.0243 -0.0827 23 1 -0.3633 0.4405 0.9285 24 1 -0.3634 0.5838 -0.8456 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9230 -0.0938 2.8738 28 1 3.3072 1.6197 -2.3719 29 1 1.9886 0.4254 -2.4268 30 1 1.8378 1.9591 -3.3174 31 1 1.6848 3.9339 -0.1885 32 1 2.9663 3.7100 -1.4034 33 1 2.8764 4.9390 -3.3741 34 1 1.3056 5.0059 -4.3379 35 1 -0.9131 6.3461 -1.8510 36 1 0.0625 7.6534 -2.5639 37 1 -0.4838 6.2963 -3.5776 38 1 3.0856 6.1451 -1.3862 39 1 2.0200 7.5704 -1.3620 40 1 1.7444 6.2335 -0.2194 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:38 Heat of formation + Delta-G solvation = 10.791753 kcal Electronic energy + Delta-G solvation = -16462.855704 eV Core-core repulsion = 14084.899036 eV Total energy + Delta-G solvation = -2377.956668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.63552 -36.61570 -32.69141 -31.20512 -29.13844 -27.53786 -26.72570 -26.35107 -23.84815 -22.13655 -20.35711 -18.90857 -18.22021 -16.33868 -15.34442 -14.88900 -14.22959 -14.02873 -13.49191 -13.41639 -13.04915 -12.73111 -12.31132 -12.21573 -12.00604 -11.76284 -11.59867 -11.19259 -11.08574 -10.90467 -10.89059 -10.75545 -10.57011 -10.46162 -10.00819 -9.67729 -9.53920 -9.26070 -9.12898 -8.95237 -8.34588 -7.07514 -5.96464 -4.09761 3.25899 3.34636 3.37805 4.03821 4.40755 4.84265 5.04560 5.17130 5.27108 5.29301 5.53664 5.78419 5.81793 5.94322 6.03365 6.12423 6.15178 6.15816 6.28197 6.33049 6.37926 6.43343 6.50504 6.52673 6.56163 6.69684 6.74321 6.85783 6.89737 7.16850 7.23895 7.40820 7.65791 7.79945 8.03338 8.20654 8.38356 8.52921 9.01448 9.57713 11.02508 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.008180 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.410520 B = 3422.253151 C = 4023.684554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.212 3.788 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.537 5.537 14 C 0.037 3.963 15 C 0.099 3.901 16 C -0.123 4.123 17 H 0.105 0.895 18 C -0.179 4.179 19 C -0.137 4.137 20 C -0.110 4.110 21 C -0.113 4.113 22 H 0.024 0.976 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.091 0.909 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.405 7.718 -7.307 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.260 5.260 14 C -0.112 4.112 15 C -0.030 4.030 16 C -0.142 4.142 17 H 0.123 0.877 18 C -0.216 4.216 19 C -0.137 4.137 20 C -0.167 4.167 21 C -0.170 4.170 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.895 7.559 -7.159 11.505 hybrid contribution 2.045 -0.019 0.154 2.051 sum -2.850 7.541 -7.005 10.680 Atomic orbital electron populations 1.21721 0.98901 0.98435 1.00611 1.21597 0.92199 0.99221 1.01913 1.19299 0.92678 0.91104 0.86307 0.94543 1.21806 0.92848 1.37298 1.06056 0.92583 1.24915 0.97832 0.95113 0.95612 1.69890 1.34781 1.38009 1.09773 0.86648 0.86396 0.77725 0.77884 1.20009 1.21036 1.20993 1.62375 1.57857 1.01297 1.04513 1.22170 0.97315 0.99196 0.92542 1.21377 0.95528 0.89247 0.96864 1.22610 1.01019 0.91777 0.98797 0.87733 1.23268 0.99449 1.05322 0.93556 1.21565 0.98228 0.93495 1.00426 1.21303 0.95517 0.99040 1.00861 1.21298 0.98361 0.99087 0.98246 0.95694 0.94368 0.93085 0.94860 0.89107 0.92995 0.95497 0.92351 0.94179 0.91507 0.94963 0.89355 0.89683 0.92377 0.92697 0.92887 0.92459 0.92915 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.84 37.15 0.37 -2.51 16 2 C -0.11 -2.66 5.08 -26.74 -0.14 -2.79 16 3 C 0.21 5.26 1.72 -68.87 -0.12 5.14 16 4 H 0.04 1.01 7.87 -51.93 -0.41 0.60 16 5 C -0.54 -14.51 7.33 -34.44 -0.25 -14.77 16 6 H 0.06 1.52 5.94 -52.49 -0.31 1.21 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -25.00 11.30 55.43 0.63 -24.38 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.54 -11.44 3.95 -236.29 -0.93 -12.37 16 14 C 0.04 0.73 8.75 60.07 0.53 1.26 16 15 C 0.10 1.92 3.84 -3.82 -0.01 1.90 16 16 C -0.12 -1.98 5.00 -90.63 -0.45 -2.43 16 17 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 18 C -0.18 -2.53 9.47 -26.74 -0.25 -2.78 16 19 C -0.14 -1.88 2.70 -154.52 -0.42 -2.29 16 20 C -0.11 -1.27 9.85 37.15 0.37 -0.91 16 21 C -0.11 -1.52 8.86 37.16 0.33 -1.19 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 25 H 0.03 0.78 6.28 -51.93 -0.33 0.46 16 26 H 0.09 2.43 6.00 -51.93 -0.31 2.11 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.03 0.58 6.31 -51.93 -0.33 0.25 16 29 H 0.06 1.18 6.18 -51.93 -0.32 0.86 16 30 H 0.04 0.71 7.63 -51.93 -0.40 0.31 16 31 H 0.07 1.37 7.40 -51.93 -0.38 0.99 16 32 H 0.03 0.67 7.21 -51.93 -0.37 0.30 16 33 H 0.09 1.29 7.94 -51.93 -0.41 0.88 16 34 H 0.08 1.08 8.05 -51.92 -0.42 0.67 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.56 7.92 -51.93 -0.41 0.15 16 37 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 38 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 39 H 0.05 0.61 7.92 -51.93 -0.41 0.19 16 40 H 0.06 0.86 7.83 -51.93 -0.41 0.45 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -27.14 308.56 -8.09 -35.23 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.26 Total: 0.28 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -0.15 Total: -19.61 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.31 Total: -36.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.14 -8.09 -35.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.021 kcal (2) G-P(sol) polarization free energy of solvation -27.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds