Wall clock time and date at job start Mon Mar 30 2020 17:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47537 * 2 1 4 4 H 1.09000 * 109.46796 * 56.96130 * 3 2 1 5 5 C 1.50697 * 109.47405 * 176.95656 * 3 2 1 6 6 H 1.07998 * 120.00072 * 120.00208 * 5 3 2 7 7 C 1.37882 * 120.00202 * 300.00466 * 5 3 2 8 8 N 1.31520 * 119.99791 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00167 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47095 * 120.00142 * 9 7 5 12 12 H 1.48509 * 109.46774 * 239.99669 * 9 7 5 13 13 N 1.46892 * 109.47273 * 296.96007 * 3 2 1 14 14 C 1.46908 * 111.00072 * 295.62576 * 13 3 2 15 15 C 1.46904 * 111.00325 * 171.67391 * 13 3 2 16 16 C 1.53000 * 109.47241 * 199.13352 * 15 13 3 17 17 H 1.09003 * 115.54984 * 29.33281 * 16 15 13 18 18 C 1.52992 * 117.49944 * 243.61728 * 16 15 13 19 19 C 1.52995 * 117.50003 * 174.99368 * 16 15 13 20 20 C 1.52994 * 117.50272 * 214.98287 * 19 16 15 21 21 C 1.53001 * 117.49634 * 359.97438 * 19 16 15 22 22 H 1.08999 * 109.47391 * 175.38562 * 1 2 3 23 23 H 1.09007 * 109.47056 * 295.38146 * 1 2 3 24 24 H 1.08996 * 109.47424 * 55.37848 * 1 2 3 25 25 H 1.09006 * 109.46919 * 239.99817 * 2 1 3 26 26 H 1.09006 * 109.47517 * 120.00368 * 2 1 3 27 27 H 0.96997 * 119.99842 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.46929 * 296.04542 * 14 13 3 29 29 H 1.08996 * 109.47163 * 56.04108 * 14 13 3 30 30 H 1.08997 * 109.47492 * 176.04674 * 14 13 3 31 31 H 1.08999 * 109.46457 * 319.13141 * 15 13 3 32 32 H 1.08999 * 109.47269 * 79.13536 * 15 13 3 33 33 H 1.08991 * 117.50268 * 0.02562 * 18 16 15 34 34 H 1.09007 * 117.49957 * 145.02080 * 18 16 15 35 35 H 1.08995 * 109.47324 * 60.00039 * 20 19 16 36 36 H 1.09003 * 109.47668 * 180.02562 * 20 19 16 37 37 H 1.08998 * 109.47071 * 300.00213 * 20 19 16 38 38 H 1.09000 * 109.46998 * 60.00060 * 21 19 16 39 39 H 1.09004 * 109.47272 * 179.97438 * 21 19 16 40 40 H 1.08997 * 109.47439 * 299.99695 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6329 1.9717 0.8615 5 6 3.5451 1.4431 0.0754 6 1 4.1252 1.8966 -0.7146 7 6 4.1816 0.8646 1.1531 8 7 3.4752 0.3128 2.1155 9 14 6.0473 0.8661 1.2469 10 1 6.6026 1.5447 0.0486 11 1 6.4808 1.5874 2.4704 12 1 6.5414 -0.5335 1.2963 13 7 1.6113 2.1134 -1.2344 14 6 2.2258 1.4891 -2.4137 15 6 1.9107 3.5507 -1.1836 16 6 1.0576 4.2863 -2.2190 17 1 0.0943 3.8289 -2.4449 18 6 1.7881 4.9962 -3.3605 19 6 1.1371 5.8140 -2.2433 20 6 -0.1412 6.5827 -2.5833 21 6 2.0633 6.4892 -1.2298 22 1 -0.3634 -1.0243 -0.0827 23 1 -0.3633 0.4405 0.9285 24 1 -0.3634 0.5838 -0.8456 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9230 -0.0938 2.8738 28 1 3.3072 1.6197 -2.3719 29 1 1.9886 0.4254 -2.4268 30 1 1.8378 1.9591 -3.3174 31 1 1.6848 3.9339 -0.1885 32 1 2.9663 3.7100 -1.4034 33 1 2.8764 4.9390 -3.3741 34 1 1.3056 5.0059 -4.3379 35 1 -0.9131 6.3461 -1.8510 36 1 0.0625 7.6534 -2.5639 37 1 -0.4838 6.2963 -3.5776 38 1 3.0856 6.1451 -1.3862 39 1 2.0200 7.5704 -1.3620 40 1 1.7444 6.2335 -0.2194 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:38 Heat of formation + Delta-G solvation = -3.238354 kcal Electronic energy + Delta-G solvation = -16463.464095 eV Core-core repulsion = 14084.899036 eV Total energy + Delta-G solvation = -2378.565059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.98575 -38.28242 -34.64312 -33.06313 -30.35224 -28.68552 -28.66537 -27.75556 -25.70878 -23.82648 -21.68372 -20.82877 -19.43121 -18.39414 -17.09872 -16.45115 -15.91823 -15.47186 -15.01465 -14.61932 -14.60823 -14.49333 -13.87315 -13.56848 -13.30783 -13.17344 -13.08465 -12.80570 -12.75240 -12.58858 -12.50313 -12.28165 -12.19725 -11.92656 -11.89247 -11.58607 -11.30453 -11.00638 -10.55759 -10.44700 -10.28467 -8.92565 -8.03394 -6.26505 1.33897 1.36889 1.46363 2.38596 2.85625 3.14008 3.41890 3.91948 3.96194 4.10943 4.27396 4.51779 4.53213 4.70989 4.75250 4.78692 4.80741 4.86954 4.92463 4.95843 4.96865 5.07023 5.09774 5.11942 5.13339 5.17831 5.31095 5.32919 5.42671 5.43776 5.51479 5.55608 5.65056 5.80890 6.07030 6.20727 6.40645 6.70217 6.95943 7.44475 8.91365 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.008180 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.410520 B = 3422.253151 C = 4023.684554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.551 4.551 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.534 5.534 14 C 0.044 3.956 15 C 0.108 3.892 16 C -0.140 4.140 17 H 0.105 0.895 18 C -0.167 4.167 19 C -0.126 4.126 20 C -0.108 4.108 21 C -0.115 4.115 22 H 0.046 0.954 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.008 0.992 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.014 0.986 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 8.634 -8.858 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.590 4.590 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.257 5.257 14 C -0.105 4.105 15 C -0.021 4.021 16 C -0.159 4.159 17 H 0.123 0.877 18 C -0.204 4.204 19 C -0.127 4.127 20 C -0.165 4.165 21 C -0.172 4.172 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.297 8.484 -8.722 13.270 hybrid contribution 2.168 -0.272 0.639 2.277 sum -3.129 8.211 -8.083 11.939 Atomic orbital electron populations 1.21581 0.96228 0.99994 1.00637 1.21444 0.94554 0.98109 1.00349 1.19078 0.91525 0.91565 0.86734 0.98129 1.22018 0.94079 1.37025 1.05862 0.93413 1.25613 1.01885 0.94957 0.95412 1.70011 1.36293 1.38563 1.10184 0.85710 0.81535 0.77813 0.77795 1.19829 1.20657 1.20432 1.62364 1.57579 1.02151 1.03574 1.22141 0.96102 0.99290 0.92934 1.21271 0.95223 0.88434 0.97162 1.22370 1.00702 0.93399 0.99424 0.87673 1.23309 0.99081 1.03946 0.94086 1.21731 0.99179 0.91934 0.99841 1.21322 0.94018 0.99682 1.01443 1.21329 0.97604 1.00667 0.97632 0.93452 0.94952 0.92244 0.94887 0.92059 0.92916 0.97389 0.92548 0.91348 0.93656 0.96817 0.90089 0.87505 0.92413 0.90998 0.91754 0.93676 0.90476 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.84 71.98 0.71 -4.45 16 2 C -0.11 -5.14 5.08 30.59 0.16 -4.99 16 3 C 0.22 11.10 1.72 44.17 0.08 11.18 16 4 H 0.00 0.04 7.87 -2.39 -0.02 0.03 16 5 C -0.55 -30.26 7.33 25.60 0.19 -30.07 16 6 H 0.05 2.66 5.94 -2.91 -0.02 2.64 16 7 C 0.02 1.17 5.30 84.65 0.45 1.62 16 8 N -0.91 -52.55 11.30 21.45 0.24 -52.31 16 9 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.53 -22.90 3.95 -901.48 -3.56 -26.45 16 14 C 0.04 1.74 8.75 127.69 1.12 2.85 16 15 C 0.11 4.26 3.84 86.30 0.33 4.59 16 16 C -0.14 -4.33 5.00 -10.80 -0.05 -4.39 16 17 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 18 C -0.17 -4.35 9.47 30.59 0.29 -4.06 16 19 C -0.13 -3.22 2.70 -52.19 -0.14 -3.36 16 20 C -0.11 -2.15 9.85 71.98 0.71 -1.44 16 21 C -0.12 -2.97 8.86 71.98 0.64 -2.33 16 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.06 2.30 7.56 -2.39 -0.02 2.28 16 25 H 0.03 1.56 6.28 -2.38 -0.01 1.55 16 26 H 0.06 3.35 6.00 -2.38 -0.01 3.33 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.01 0.33 6.31 -2.39 -0.02 0.32 16 29 H 0.06 2.24 6.18 -2.39 -0.01 2.22 16 30 H 0.07 2.31 7.63 -2.39 -0.02 2.29 16 31 H 0.04 1.95 7.40 -2.39 -0.02 1.93 16 32 H 0.01 0.58 7.21 -2.39 -0.02 0.56 16 33 H 0.08 2.24 7.94 -2.39 -0.02 2.22 16 34 H 0.11 2.34 8.05 -2.38 -0.02 2.32 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.21 7.92 -2.39 -0.02 1.19 16 37 H 0.06 1.15 7.90 -2.39 -0.02 1.13 16 38 H 0.04 1.25 7.90 -2.39 -0.02 1.23 16 39 H 0.08 1.60 7.92 -2.39 -0.02 1.58 16 40 H 0.05 1.38 7.83 -2.39 -0.02 1.37 16 Total: -1.00 -58.56 308.56 4.15 -54.41 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.97 Total: 13.12 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 4.47 Total: -34.85 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -3.32 Total: -78.76 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -58.56 4.15 -54.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.176 kcal (2) G-P(sol) polarization free energy of solvation -58.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds