Wall clock time and date at job start Mon Mar 30 2020 17:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46915 * 2 1 4 4 H 1.08998 * 109.47080 * 302.83833 * 3 2 1 5 5 C 1.50708 * 109.46761 * 182.84345 * 3 2 1 6 6 H 1.08003 * 119.99826 * 239.99690 * 5 3 2 7 7 C 1.37871 * 120.00351 * 59.99961 * 5 3 2 8 8 N 1.31522 * 119.99820 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00351 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47138 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46981 * 299.99930 * 9 7 5 12 12 H 1.48499 * 109.46890 * 59.99819 * 9 7 5 13 13 N 1.46895 * 109.47567 * 62.84463 * 3 2 1 14 14 C 1.46898 * 111.00350 * 192.76420 * 13 3 2 15 15 C 1.46902 * 111.00112 * 68.80800 * 13 3 2 16 16 C 1.53001 * 109.47122 * 195.81075 * 15 13 3 17 17 H 1.09000 * 115.55354 * 29.32392 * 16 15 13 18 18 C 1.53003 * 117.49546 * 243.62262 * 16 15 13 19 19 C 1.52996 * 60.00020 * 252.50665 * 18 16 15 20 20 C 1.52992 * 117.50280 * 252.51089 * 19 18 16 21 21 C 1.53009 * 117.51413 * 107.47984 * 19 18 16 22 22 H 1.08997 * 109.46836 * 294.94902 * 1 2 3 23 23 H 1.09002 * 109.46845 * 54.95068 * 1 2 3 24 24 H 1.08995 * 109.46979 * 174.95056 * 1 2 3 25 25 H 1.08995 * 109.47065 * 239.99923 * 2 1 3 26 26 H 1.08999 * 109.46741 * 119.99930 * 2 1 3 27 27 H 0.96997 * 120.00216 * 180.02562 * 8 7 5 28 28 H 1.09008 * 109.46661 * 59.99913 * 14 13 3 29 29 H 1.09005 * 109.47017 * 179.97438 * 14 13 3 30 30 H 1.08998 * 109.47191 * 299.99768 * 14 13 3 31 31 H 1.09000 * 109.47074 * 315.80881 * 15 13 3 32 32 H 1.08993 * 109.47179 * 75.80908 * 15 13 3 33 33 H 1.09000 * 117.49789 * 359.97438 * 18 16 15 34 34 H 1.09001 * 117.49548 * 145.02053 * 18 16 15 35 35 H 1.09001 * 109.47346 * 128.62034 * 20 19 18 36 36 H 1.09006 * 109.47271 * 248.62028 * 20 19 18 37 37 H 1.08993 * 109.47365 * 8.61943 * 20 19 18 38 38 H 1.08995 * 109.47072 * 351.37080 * 21 19 18 39 39 H 1.09000 * 109.46721 * 111.37765 * 21 19 18 40 40 H 1.09007 * 109.46979 * 231.37274 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6357 1.9707 -0.8634 5 6 3.5454 1.4430 -0.0705 6 1 4.1229 1.8975 0.7210 7 6 4.1855 0.8635 -1.1453 8 7 3.4823 0.3096 -2.1089 9 14 6.0514 0.8648 -1.2330 10 1 6.4889 0.1855 -2.4790 11 1 6.5459 2.2650 -1.2335 12 1 6.6027 0.1454 -0.0567 13 7 1.6073 2.1149 1.2322 14 6 1.8102 3.5668 1.1389 15 6 2.2980 1.5612 2.4046 16 6 1.5624 1.9853 3.6774 17 1 0.4899 2.1467 3.5690 18 6 2.3157 2.8801 4.6636 19 6 2.0597 1.4110 5.0054 20 6 1.0136 1.1074 6.0797 21 6 3.2543 0.4559 4.9589 22 1 -0.3633 0.4335 0.9318 23 1 -0.3633 0.5902 -0.8413 24 1 -0.3633 -1.0236 -0.0904 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9325 -0.0985 -2.8650 28 1 1.2315 3.9615 0.3036 29 1 1.4812 4.0399 2.0641 30 1 2.8679 3.7763 0.9794 31 1 2.3114 0.4733 2.3381 32 1 3.3210 1.9360 2.4341 33 1 3.3354 3.1663 4.4059 34 1 1.7388 3.6305 5.2042 35 1 0.3022 0.3753 5.6976 36 1 1.5075 0.7065 6.9649 37 1 0.4858 2.0242 6.3422 38 1 4.1134 0.9694 4.5274 39 1 3.4968 0.1281 5.9698 40 1 3.0033 -0.4102 4.3464 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:39 Heat of formation + Delta-G solvation = 10.234431 kcal Electronic energy + Delta-G solvation = -16608.608857 eV Core-core repulsion = 14230.628022 eV Total energy + Delta-G solvation = -2377.980835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.65734 -36.52595 -32.70360 -31.17618 -29.23243 -27.52735 -26.73475 -26.29236 -23.79719 -21.91047 -20.60734 -18.90366 -18.29561 -16.27849 -15.13930 -14.95540 -14.24603 -13.87300 -13.57845 -13.25767 -13.16534 -12.73585 -12.28846 -12.16271 -12.01788 -11.73247 -11.50555 -11.33331 -11.09927 -10.97758 -10.90445 -10.76448 -10.59000 -10.38280 -10.01870 -9.64956 -9.56795 -9.24648 -9.10189 -8.92569 -8.33377 -7.07032 -5.96409 -4.09679 3.28172 3.33541 3.35923 4.06351 4.40740 4.87289 5.07048 5.19335 5.27457 5.31070 5.54313 5.80655 5.83995 5.96023 6.05181 6.13525 6.16094 6.18641 6.28133 6.35942 6.36754 6.44323 6.50990 6.54439 6.59321 6.70089 6.75773 6.79347 6.95515 7.17920 7.22536 7.42743 7.63732 7.80191 8.04324 8.20044 8.38557 8.53443 9.00932 9.57699 11.02805 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.008624 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.666704 B = 3246.081667 C = 3665.600366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C 0.213 3.787 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.287 1.287 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.538 5.538 14 C 0.037 3.963 15 C 0.098 3.902 16 C -0.125 4.125 17 H 0.103 0.897 18 C -0.180 4.180 19 C -0.136 4.136 20 C -0.110 4.110 21 C -0.113 4.113 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.091 0.909 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 1.639 11.036 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.212 1.212 11 H -0.204 1.204 12 H -0.203 1.203 13 N -0.261 5.261 14 C -0.112 4.112 15 C -0.030 4.030 16 C -0.143 4.143 17 H 0.121 0.879 18 C -0.217 4.217 19 C -0.137 4.137 20 C -0.167 4.167 21 C -0.170 4.170 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.109 0.891 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.634 1.455 10.891 11.573 hybrid contribution 2.011 0.224 -0.251 2.039 sum -1.622 1.679 10.639 10.892 Atomic orbital electron populations 1.21687 0.98884 0.98253 1.00526 1.21581 0.92192 0.99208 1.01789 1.19293 0.92642 0.91093 0.86319 0.94558 1.21733 0.92774 1.37431 1.06220 0.92698 1.24908 0.97821 0.95114 0.95567 1.69868 1.34989 1.37743 1.09829 0.86765 0.86368 0.78155 0.77361 1.21216 1.20443 1.20339 1.62387 1.56535 1.02775 1.04416 1.22130 0.99256 0.90219 0.99609 1.21430 0.94112 0.99872 0.87632 1.22645 0.99644 1.01791 0.90263 0.87858 1.23279 1.01435 0.92456 1.04552 1.21557 0.98965 0.95143 0.97990 1.21301 0.97406 1.01155 0.96841 1.21298 0.95945 0.98719 1.01023 0.93475 0.94293 0.95703 0.89118 0.94946 0.92870 0.93078 0.93632 0.95731 0.90698 0.94888 0.89376 0.89728 0.92389 0.92714 0.92917 0.92459 0.92957 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.72 37.16 0.36 -2.45 16 2 C -0.11 -2.61 5.18 -26.73 -0.14 -2.75 16 3 C 0.21 5.28 1.71 -68.87 -0.12 5.16 16 4 H 0.04 1.00 8.01 -51.93 -0.42 0.59 16 5 C -0.54 -14.54 7.22 -34.44 -0.25 -14.79 16 6 H 0.05 1.48 6.00 -52.48 -0.31 1.17 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.89 -24.98 11.30 55.43 0.63 -24.36 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.54 -11.47 4.10 -236.29 -0.97 -12.44 16 14 C 0.04 0.73 9.23 60.06 0.55 1.28 16 15 C 0.10 1.93 3.37 -3.82 -0.01 1.92 16 16 C -0.12 -2.03 4.77 -90.62 -0.43 -2.46 16 17 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 18 C -0.18 -2.58 9.47 -26.73 -0.25 -2.84 16 19 C -0.14 -1.91 2.70 -154.51 -0.42 -2.33 16 20 C -0.11 -1.30 9.85 37.15 0.37 -0.93 16 21 C -0.11 -1.57 8.86 37.16 0.33 -1.24 16 22 H 0.05 0.93 7.84 -51.93 -0.41 0.53 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 2.41 6.00 -51.93 -0.31 2.10 16 26 H 0.03 0.76 6.30 -51.93 -0.33 0.44 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.05 0.99 8.10 -51.92 -0.42 0.57 16 29 H 0.04 0.79 7.40 -51.93 -0.38 0.41 16 30 H 0.02 0.52 7.34 -51.93 -0.38 0.14 16 31 H 0.07 1.58 5.69 -51.93 -0.30 1.29 16 32 H 0.03 0.70 6.36 -51.93 -0.33 0.37 16 33 H 0.09 1.31 7.94 -51.93 -0.41 0.90 16 34 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.57 7.92 -51.93 -0.41 0.16 16 37 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 38 H 0.06 0.83 7.90 -51.93 -0.41 0.42 16 39 H 0.05 0.62 7.92 -51.93 -0.41 0.21 16 40 H 0.06 0.90 7.83 -51.93 -0.41 0.49 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -27.07 309.03 -8.11 -35.17 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.29 Total: 0.43 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -0.11 Total: -19.65 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.34 Total: -36.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.07 -8.11 -35.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.406 kcal (2) G-P(sol) polarization free energy of solvation -27.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds