Wall clock time and date at job start Mon Mar 30 2020 17:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 C 1.53006 * 109.47061 * 174.07830 * 3 2 1 5 5 C 1.53002 * 109.46829 * 185.52693 * 4 3 2 6 6 N 1.46897 * 109.47477 * 294.07803 * 3 2 1 7 7 C 1.46894 * 111.00284 * 140.20313 * 6 3 2 8 8 H 1.09003 * 109.35603 * 26.69446 * 7 6 3 9 9 C 1.52965 * 109.41207 * 146.51222 * 7 6 3 10 10 C 1.53230 * 109.40177 * 183.70592 * 9 7 6 11 11 C 1.51270 * 108.54154 * 305.37344 * 10 9 7 12 12 C 1.37873 * 120.84922 * 231.37057 * 11 10 9 13 13 N 1.31510 * 120.00256 * 359.97438 * 12 11 10 14 14 Si 1.86805 * 119.99751 * 179.97438 * 12 11 10 15 15 H 1.48495 * 109.46928 * 90.00456 * 14 12 11 16 16 H 1.48497 * 109.46988 * 209.99891 * 14 12 11 17 17 H 1.48498 * 109.46989 * 329.99859 * 14 12 11 18 18 C 1.51270 * 118.29852 * 51.34447 * 11 10 9 19 19 C 1.52960 * 109.41571 * 266.86489 * 7 6 3 20 20 H 1.08996 * 109.46945 * 185.60600 * 1 2 3 21 21 H 1.09004 * 109.46825 * 305.60565 * 1 2 3 22 22 H 1.08998 * 109.47041 * 65.60830 * 1 2 3 23 23 H 1.09003 * 109.47032 * 240.00387 * 2 1 3 24 24 H 1.09000 * 109.47127 * 120.00318 * 2 1 3 25 25 H 1.09000 * 109.46906 * 54.07677 * 3 2 1 26 26 H 1.08998 * 109.46943 * 305.52278 * 4 3 2 27 27 H 1.08999 * 109.47161 * 65.53118 * 4 3 2 28 28 H 1.09008 * 109.47286 * 57.87414 * 5 4 3 29 29 H 1.09003 * 109.46786 * 177.86471 * 5 4 3 30 30 H 1.08997 * 109.47414 * 297.87055 * 5 4 3 31 31 H 1.00908 * 110.99677 * 16.25020 * 6 3 2 32 32 H 1.08991 * 109.48142 * 63.72856 * 9 7 6 33 33 H 1.09000 * 109.48283 * 303.68237 * 9 7 6 34 34 H 1.09004 * 109.62694 * 65.08826 * 10 9 7 35 35 H 1.08999 * 109.62864 * 185.46213 * 10 9 7 36 36 H 0.96998 * 120.00416 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.62540 * 68.37055 * 18 11 10 38 38 H 1.08997 * 109.62698 * 188.94179 * 18 11 10 39 39 H 1.08995 * 109.48065 * 56.31907 * 19 7 6 40 40 H 1.08994 * 109.49278 * 296.28048 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5628 1.4450 0.1488 5 6 4.0593 2.8856 0.2872 6 7 1.6706 2.0925 -1.2644 7 6 1.2489 3.4814 -1.0388 8 1 1.7278 3.8624 -0.1368 9 6 1.6633 4.3394 -2.2355 10 6 1.3063 5.8038 -1.9599 11 6 -0.1644 5.8837 -1.6152 12 6 -0.9956 6.7716 -2.2646 13 7 -0.5122 7.5635 -3.1967 14 14 -2.8084 6.8498 -1.8204 15 1 -3.0092 7.8413 -0.7334 16 1 -3.5931 7.2576 -3.0134 17 1 -3.2637 5.5129 -1.3617 18 6 -0.7000 4.9641 -0.5401 19 6 -0.2703 3.5301 -0.8672 20 1 -0.3633 -1.0227 0.1004 21 1 -0.3633 0.5983 0.8356 22 1 -0.3633 0.4244 -0.9359 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.5927 1.9860 0.8322 26 1 3.8420 0.8776 1.0366 27 1 4.0147 0.9880 -0.7316 28 1 3.5785 3.3547 1.1458 29 1 5.1397 2.8852 0.4313 30 1 3.8133 3.4431 -0.6165 31 1 0.9525 1.5699 -1.7434 32 1 1.1368 3.9984 -3.1268 33 1 2.7384 4.2505 -2.3916 34 1 1.8990 6.1739 -1.1233 35 1 1.5105 6.4036 -2.8468 36 1 -1.0969 8.1879 -3.6539 37 1 -0.2931 5.2564 0.4278 38 1 -1.7881 5.0237 -0.5160 39 1 -0.5656 2.8676 -0.0536 40 1 -0.7511 3.2082 -1.7909 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257287035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:42 Heat of formation + Delta-G solvation = -53.394604 kcal Electronic energy + Delta-G solvation = -16693.443375 eV Core-core repulsion = 14312.703378 eV Total energy + Delta-G solvation = -2380.739997 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86292 -37.37416 -34.41316 -32.99742 -32.02926 -31.35615 -28.52937 -26.44280 -23.59690 -23.03774 -22.75016 -21.50665 -20.72540 -18.04708 -16.83064 -16.48324 -16.24487 -15.12792 -14.88312 -14.78257 -14.64491 -14.38663 -13.97931 -13.92875 -13.69621 -13.29249 -13.16210 -12.77449 -12.62353 -12.59111 -12.38056 -11.91317 -11.80230 -11.76778 -11.61939 -11.41427 -11.31731 -11.29392 -10.69822 -10.55270 -10.52412 -9.07988 -8.15462 -6.09615 1.37232 1.38952 1.47630 2.40335 3.08564 3.41056 3.89709 4.07952 4.18708 4.29751 4.34198 4.46503 4.58268 4.62806 4.66116 4.75473 4.79383 4.98264 5.03740 5.07882 5.10872 5.12699 5.15573 5.16179 5.20905 5.26118 5.28029 5.38960 5.48941 5.53147 5.58857 5.60015 5.65040 5.80825 5.88480 6.37386 6.39780 6.71622 6.97405 7.47792 8.95663 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034032 B = 0.007989 C = 0.006918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.557744 B = 3504.028815 C = 4046.298188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C 0.082 3.918 4 C -0.104 4.104 5 C -0.151 4.151 6 N -0.683 5.683 7 C 0.114 3.886 8 H 0.060 0.940 9 C -0.080 4.080 10 C 0.006 3.994 11 C -0.494 4.494 12 C 0.017 3.983 13 N -0.935 5.935 14 Si 0.941 3.059 15 H -0.275 1.275 16 H -0.293 1.293 17 H -0.249 1.249 18 C -0.021 4.021 19 C -0.123 4.123 20 H 0.069 0.931 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.339 0.661 32 H 0.031 0.969 33 H 0.042 0.958 34 H -0.005 1.005 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.017 0.983 38 H 0.033 0.967 39 H 0.053 0.947 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.154 -14.547 7.289 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.162 4.162 3 C -0.027 4.027 4 C -0.142 4.142 5 C -0.208 4.208 6 N -0.314 5.314 7 C 0.005 3.995 8 H 0.078 0.922 9 C -0.118 4.118 10 C -0.032 4.032 11 C -0.514 4.514 12 C -0.181 4.181 13 N -0.575 5.575 14 Si 0.767 3.233 15 H -0.201 1.201 16 H -0.219 1.219 17 H -0.173 1.173 18 C -0.059 4.059 19 C -0.162 4.162 20 H 0.088 0.912 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.159 0.841 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.013 0.987 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.767 -14.265 7.010 16.335 hybrid contribution -1.759 0.731 0.140 1.909 sum 2.009 -13.534 7.150 15.438 Atomic orbital electron populations 1.21847 0.95970 1.02229 1.01313 1.21771 0.95715 0.95409 1.03277 1.21741 0.96014 0.94421 0.90564 1.21511 0.94476 0.96521 1.01664 1.21776 1.00516 0.97605 1.00935 1.60694 1.46210 1.02230 1.22290 1.21287 0.92945 0.88090 0.97220 0.92201 1.21378 0.97850 0.95671 0.96945 1.19358 0.94692 0.93355 0.95820 1.20668 0.94632 1.17713 1.18354 1.25662 1.02383 0.95144 0.94909 1.69989 1.37101 1.24215 1.26195 0.85801 0.80974 0.79072 0.77409 1.20118 1.21930 1.17334 1.19798 0.96743 0.93592 0.95767 1.22108 0.97028 0.97519 0.99588 0.91194 0.93426 0.93433 0.90971 0.90067 0.94402 0.90765 0.91776 0.94056 0.92347 0.93676 0.84129 0.94989 0.93933 0.98696 0.96058 0.92936 0.96474 0.94880 0.92828 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.70 71.98 0.70 -2.39 16 2 C -0.12 -2.41 5.38 30.59 0.16 -2.25 16 3 C 0.08 2.05 2.12 44.92 0.10 2.15 16 4 C -0.10 -2.40 5.61 30.60 0.17 -2.23 16 5 C -0.15 -4.01 8.73 71.98 0.63 -3.38 16 6 N -0.68 -20.62 5.87 -469.61 -2.76 -23.38 16 7 C 0.11 4.24 1.26 44.89 0.06 4.30 16 8 H 0.06 2.31 6.21 -2.39 -0.01 2.30 16 9 C -0.08 -3.51 5.47 30.66 0.17 -3.34 16 10 C 0.01 0.30 5.96 30.11 0.18 0.48 16 11 C -0.49 -26.61 5.51 -16.17 -0.09 -26.69 16 12 C 0.02 0.93 5.46 84.65 0.46 1.39 16 13 N -0.93 -56.42 12.73 21.45 0.27 -56.15 16 14 Si 0.94 43.87 27.53 68.60 1.89 45.76 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 17 H -0.25 -10.81 6.10 99.48 0.61 -10.21 16 18 C -0.02 -0.96 5.59 30.11 0.17 -0.79 16 19 C -0.12 -4.77 5.19 30.66 0.16 -4.61 16 20 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.05 1.03 6.79 -2.39 -0.02 1.02 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.05 7.45 -2.39 -0.02 1.03 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.11 8.04 -2.38 -0.02 1.09 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.43 6.16 -2.39 -0.01 1.41 16 31 H 0.34 9.82 6.28 -89.69 -0.56 9.26 16 32 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.77 7.53 -2.39 -0.02 1.75 16 34 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.02 1.23 7.08 -2.39 -0.02 1.21 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.03 1.49 4.59 -2.39 -0.01 1.48 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -59.55 298.60 2.59 -56.95 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.33 Total: 14.17 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 2.86 Total: -37.36 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -2.49 Total: -79.52 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.89 Total: 45.76 kcal Total: -59.55 2.59 -56.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257287035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.559 kcal (2) G-P(sol) polarization free energy of solvation -59.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds